tRNAscan-SE Analysis of the Desulfotalea psychrophila LSv54 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

plain text version

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	363837	363930	View	SeC(p)	TCA	0	0	28.39	0.00	0.00	Eufind
chr	2	785819	785904	View	Ser	TGA	0	0	74.62	47.25	27.37	Both
chr	3	785913	786004	View	Ser	GCT	0	0	55.10	31.55	23.55	Both
chr	4	807931	808007	View	Ile	GAT	0	0	100.93	78.82	22.11	Both
chr	5	808012	808087	View	Ala	TGC	0	0	93.84	76.31	17.53	Both
chr	6	1046821	1046897	View	Arg	TCT	0	0	95.41	74.19	21.22	Both
chr	7	1253753	1253828	View	Thr	TGT	0	0	83.47	67.34	16.13	Both
chr	8	1253904	1253988	View	Tyr	GTA	0	0	77.12	46.64	30.48	Both
chr	9	1254007	1254082	View	Gly	TCC	0	0	86.33	64.12	22.21	Both
chr	10	1254102	1254177	View	Thr	GGT	0	0	92.27	68.19	24.08	Both
chr	11	1255658	1255734	View	Trp	CCA	0	0	76.45	57.21	19.24	Both
chr	12	1305273	1305349	View	Arg	CCT	0	0	87.09	59.57	27.52	Both
chr	13	1606558	1606643	View	Ser	GGA	0	0	61.30	33.12	28.18	Both
chr	14	1791402	1791486	View	Leu	TAG	0	0	71.50	50.23	21.27	Both
chr	15	2106124	2106200	View	Met	CAT	0	0	86.53	62.51	24.02	Both
chr	16	2262518	2262593	View	Thr	CGT	0	0	84.06	55.56	28.50	Both
chr	17	2426698	2426774	View	His	GTG	0	0	87.64	68.78	18.86	Both
chr	18	2853780	2853854	View	Glu	CTC	0	0	69.11	50.13	18.98	Both
chr	19	2874486	2874560	View	Glu	CTC	0	0	69.11	50.13	18.98	Both
chr	20	3358386	3358470	View	Tyr	GTA	0	0	77.12	46.64	30.48	Both
chr	21	3358582	3358657	View	Thr	GGT	0	0	93.39	69.31	24.08	Both
chr	22	3403959	3403883	View	Arg	ACG	0	0	89.14	68.32	20.82	Both
chr	23	3396342	3396266	View	Arg	ACG	0	0	89.14	68.32	20.82	Both
chr	24	3096676	3096602	View	Gln	TTG	0	0	71.29	47.86	23.43	Both
chr	25	3096416	3096342	View	Gln	TTG	0	0	71.29	47.86	23.43	Both
chr	26	2889552	2889477	View	Val	TAC	0	0	93.49	69.79	23.70	Both
chr	27	2889417	2889341	View	Asp	GTC	0	0	91.30	74.16	17.14	Both
chr	28	2889322	2889247	View	Val	TAC	0	0	93.49	69.79	23.70	Both
chr	29	2889191	2889115	View	Asp	GTC	0	0	91.30	74.16	17.14	Both
chr	30	2889095	2889020	View	Val	TAC	0	0	93.49	69.79	23.70	Both
chr	31	2888964	2888888	View	Asp	GTC	0	0	91.30	74.16	17.14	Both
chr	32	2888869	2888794	View	Val	TAC	0	0	93.49	69.79	23.70	Both
chr	33	2888738	2888662	View	Asp	GTC	0	0	91.30	74.16	17.14	Both
chr	34	2888642	2888567	View	Val	TAC	0	0	93.49	69.79	23.70	Both
chr	35	2888511	2888435	View	Asp	GTC	0	0	90.44	73.30	17.14	Both
chr	36	2888414	2888339	View	Val	TAC	0	0	93.49	69.79	23.70	Both
chr	37	2888283	2888207	View	Asp	GTC	0	0	91.30	74.16	17.14	Both
chr	38	2607832	2607756	View	His	GTG	0	0	85.72	66.86	18.86	Both
chr	39	2024869	2024794	View	Phe	GAA	0	0	90.13	71.23	18.90	Both
chr	40	2009564	2009489	View	Phe	GAA	0	0	90.13	71.23	18.90	Both
chr	41	1947022	1946946	View	Met	CAT	0	0	86.53	62.51	24.02	Both
chr	42	1946920	1946844	View	Met	CAT	0	0	86.53	62.51	24.02	Both
chr	43	1787980	1787894	View	Leu	TAA	0	0	66.58	31.79	34.79	Both
chr	44	1594939	1594865	View	Val	GAC	0	0	80.94	57.19	23.75	Both
chr	45	1586641	1586564	View	Pro	GGG	0	0	77.59	50.48	27.11	Both
chr	46	1483010	1482936	View	Gly	GCC	0	0	73.41	45.70	27.71	Both
chr	47	1462154	1462078	View	Ile	GAT	0	0	100.93	78.82	22.11	Both
chr	48	1462073	1461998	View	Ala	TGC	0	0	93.84	76.31	17.53	Both
chr	49	1389600	1389526	View	Cys	GCA	0	0	77.50	56.47	21.03	Both
chr	50	1236485	1236399	View	Leu	CAG	0	0	67.26	37.95	29.31	Both
chr	51	1217809	1217734	View	Ala	GGC	0	0	85.79	65.80	19.99	Both
chr	52	1172018	1171942	View	Arg	TCG	0	0	90.76	71.97	18.79	Both
chr	53	766714	766639	View	Lys	TTT	0	0	87.14	57.22	29.92	Both
chr	54	766622	766545	View	Glu	TTC	0	0	58.23	32.75	25.48	tRNAscan
chr	55	763275	763200	View	Lys	TTT	0	0	87.14	57.22	29.92	Both
chr	56	763192	763115	View	Glu	TTC	0	0	59.52	32.77	26.75	Both
chr	57	721424	721349	View	Asn	GTT	0	0	86.12	61.92	24.20	Both
chr	58	721311	721234	View	Pro	TGG	0	0	90.80	68.61	22.19	Both
chr	59	694797	694721	View	Met	CAT	0	0	94.61	72.09	22.52	Both
chr	60	671952	671878	View	Gly	GCC	0	0	73.41	45.70	27.71	Both
chr	61	455538	455452	View	Leu	CAA	0	0	73.76	44.81	28.95	Both
chr	62	204950	204874	View	Met	CAT	0	0	87.19	66.00	21.19	Both
chr	63	109530	109446	View	Leu	GAG	0	0	58.20	30.77	27.43	Both
chr	64	109206	109122	View	Leu	GAG	0	0	58.20	30.77	27.43	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.