tRNAscan-SE Analysis of the Deinococcus radiodurans Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr1.trna30 (1781244-1781169)	Length: 76 bp
Type: Ala	Anticodon: CGC at 34-36 (1781211-1781209)	Score: 82.20
Seq: GGGGTCGTAGCTCAGCTGGGAGAGCGCGTCGTTCGCAATGACGAGGtCAGGGGTTCGATCCCCCTCGACTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna44 (294718-294643)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (294685-294683)	Score: 89.10
Seq: GGGGCTGTGGCGCAGTTGGGAGCGCGTCTGAATGGCATTCAGAAGGtCAGGGGTTCGAATCCCCTCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna6 (564388-564462)	Length: 75 bp
Type: Ala	Anticodon: TGC at 33-35 (564420-564422)	Score: 89.27
Seq: GGGGGCTTAGCTCAGCGGGAGAGCATCCGCTTTGCAAGCGGAGGGtCTAGGGTTCGAATCCCTAAGCCTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna17 (2181867-2181943)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (2181901-2181903)	Score: 81.64
Seq: GTGCCCGTAGCTCAGCTGGAtAGAGCGTCTGACTACGGATCAGAAGGcCAGGAGTTCGAATCTCTTCGGGCACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna2 (68827-68903)	Length: 77 bp
Type: Arg	Anticodon: CCG at 35-37 (68861-68863)	Score: 82.30
Seq: GCACTCGTAGCTCAGGTGGAtAGAGCGTTGGCCTCCGGAGCCAAAGGcCACTGGTTCGAGTCCAGTCGAGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna3 (146086-146162)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (146120-146122)	Score: 83.80
Seq: GCACTCGTAGCTCAGTTGGAtAGAGCGGCCCCCTCCTAAGGGGCAGGcCACTGGTTCGACTCCAGTCGAGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna5 (518331-518407)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (518365-518367)	Score: 96.44
Seq: GCACCCTTAGCTCAGCTGGAtAGAGCAACCGCCTTCTAAGCGGTCGGtCGTAGGTTCGAGTCCTACAGGGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna14 (2070898-2070972)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (2070930-2070932)	Score: 86.16
Seq: TCGGCAGTAGCTCAGTGGCAGAGCATCCGACTGTTAATCGGACGGtCGTTGGTTCGACCCCAACCTGCCGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna33 (1272112-1272038)	Length: 75 bp
Type: Asp	Anticodon: GTC at 34-36 (1272079-1272077)	Score: 44.20
Seq: GGTTTCATCGTCCAGCGGCcAGGATGCCCCGTTGTCTGCGGGAGGACGCGGGTTCGAGTCCCGCTGGGACCGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna45 (249822-249747)	Length: 76 bp
Type: Asp	Anticodon: GTC at 34-36 (249789-249787)	Score: 85.23
Seq: GGTCCGGTAGTGTAGCGGTtAGCATATCTGCCTGTCACGCAGAAGGtCGCGGGTTCAAATCCCGTCCGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna47 (22107-22032)	Length: 76 bp
Type: Asp	Anticodon: GTC at 34-36 (22074-22072)	Score: 85.23
Seq: GGTCCGGTAGTGTAGCGGTtAGCATATCTGCCTGTCACGCAGAAGGtCGCGGGTTCAAATCCCGTCCGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna7 (576883-576956)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (576915-576917)	Score: 78.53
Seq: GGCGCTGTAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTCCACCACCGGTTCGAGTCCGGTCAGCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr1.trna29 (2005480-2005407)	Length: 74 bp
Type: Gln	Anticodon: CTG at 33-35 (2005448-2005446)	Score: 53.58
Seq: TGGGGTATCGTCTAATGGCAGGACGTCGGTTTCTGGCACCGTTAATCAAGGTTCGAGTCCTTGTACCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna46 (57154-57081)	Length: 74 bp
Type: Gln	Anticodon: TTG at 33-35 (57122-57120)	Score: 62.39
Seq: AGGGATATGGTGTAATGGTAGCACAACAGATTTTGGTTCTGTTTGTCTAGGTTCGAATCCTTGTATCCCTGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>.>>>.......<<<.<<<<<<<<....

chr1.trna19 (2530438-2530512)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (2530471-2530473)	Score: 71.40
Seq: GGCCCCATCGTCTAACGGTtAGGACACTACCCTTTCAAGGTAGCGATACGGGTTCGAATCCCGTTGGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr1.trna26 (2063699-2063627)	Length: 73 bp
Type: Gly	Anticodon: CCC at 34-36 (2063666-2063664)	Score: 85.69
Seq: GCGGGAATAGCTCAGTTGGTAGAGCGTCAGCTTCCCAAGCTGAATGtCGCGAGTTCGAGTCTCGTTTCCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr1.trna20 (2584820-2584745)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (2584787-2584785)	Score: 93.49
Seq: GCGGGAGTAGCTCAGCTGGTAGAGCACTACCTTGCCAAGGTAGATGtCGCGAGTTCGAATCTCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna22 (2245082-2245007)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (2245049-2245047)	Score: 93.49
Seq: GCGGGAGTAGCTCAGCTGGTAGAGCACTACCTTGCCAAGGTAGATGtCGCGAGTTCGAATCTCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna4 (254523-254598)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (254556-254558)	Score: 93.49
Seq: GCGGGAGTAGCTCAGCTGGTAGAGCACTACCTTGCCAAGGTAGATGtCGCGAGTTCGAATCTCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna39 (652707-652634)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (652675-652673)	Score: 69.64
Seq: GCGGGATTGGTGTAGTGGTAGCACAGCAGCCTTCCAAGCTTCTGGCCTCGGTTCGAATCCGTGATCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>.>>>.......<<<.<....>.>>>.......<<<.<<<<<<<<....

chr1.trna36 (936961-936885)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (936927-936925)	Score: 82.90
Seq: GTGGAATTAGCTCAGTCGGTtAGAGCGCCGCTCTGTGGAAGCGGAGGcCGTGGGTTCAAGTCCCATATTCCACCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna11 (886348-886424)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (886382-886384)	Score: 91.86
Seq: GCGAGTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCCCCAGTTCAAGTCTGGGCATTCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna12 (1317108-1317190)	Length: 83 bp
Type: Leu	Anticodon: CAA at 35-37 (1317142-1317144)	Score: 78.83
Seq: GCCGATATGGCGGAATTGGTaGACGCACTCGACTCAAAATCGAGCGGGAAACCGTAAGGGTTCGAGTCCCTTTATCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>....<<..>>>>>.......<<<<<<<<<<<<....

chr1.trna23 (2118461-2118377)	Length: 85 bp
Type: Leu	Anticodon: CAG at 35-37 (2118427-2118425)	Score: 67.07
Seq: GCCGAGGTGGCGGAATTGGTaGACGCACTAGTTTCAGGGACTAGCGCCGCGAGGTGTGTGGGTTCAAATCCCATCCTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.><.<<<..>>>>>.......<<<<<<<<<<<<....

chr1.trna43 (339324-339242)	Length: 83 bp
Type: Leu	Anticodon: GAG at 35-37 (339290-339288)	Score: 56.60
Seq: GCTCGGGTGGCGGAATTGGTaGACGCGCACGTTTGAGGGGCGTGTGGGTAACCGTGTGGGTTCAAGTCCCATCTCGAGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>....<<..>>>>>.......<<<<<<<<<<<<....

chr1.trna10 (863725-863809)	Length: 85 bp
Type: Leu	Anticodon: TAA at 35-37 (863759-863761)	Score: 69.30
Seq: GTCGGGATGGCGGAATCGGTaGACGCATTCGACTTAAAATCGACCGAGGCAACTCGTGCGGGTTCAAGTCCCGTTCCCGGCACCA
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr1.trna37 (936835-936750)	Length: 86 bp
Type: Leu	Anticodon: TAG at 35-37 (936801-936799)	Score: 74.05
Seq: GCGAGGGTGGCGGAATTGGTaGACGCACTAGACTTAGGATCTAGTATCCGTAGGATGTGAGGGTTCAAGTCCCTTCTCTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<....

chr1.trna1 (41882-41957)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (41915-41917)	Score: 92.95
Seq: GGGTCGTTAGCTCAATTGGCAGAGCAGCTGACTCTTAATCAGCGGGtTGTAGGTTCGATTCCTACACGACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna28 (2037842-2037768)	Length: 75 bp
Type: Lys	Anticodon: TTT at 33-35 (2037810-2037808)	Score: 81.66
Seq: GGGTTGTTAGCTCAATGGTAGAGCAGCTGACTTTTAATCAGCGGGtTCTCGGTTCGAGTCCGAGGCGACCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna31 (1655471-1655395)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1655437-1655435)	Score: 84.39
Seq: CGCAGGGTAGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGGAGGtCGCAGGTTCAAATCCTGTCCCTGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr1.trna41 (498507-498432)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (498474-498472)	Score: 85.21
Seq: GGGCTCTTAGCTCAACGGTcAGAGCAGTCGGCTCATAACCGATTGGtTGCCGGTTCAAATCCGGCAGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr2.trna1 (60481-60557)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (60515-60517)	Score: 90.52
Seq: GGCGACGTAGCTCAGCTGGTtAGAGCGCACGACTCATAATCGTGAGGtCGARAGTTCAAGTCTCTCTGTCGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....

chr1.trna48 (22010-21935)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (21977-21975)	Score: 95.84
Seq: GGCTAGGTAGCTCAGCTGGTAGAGCAAACGACTGAAAATCGTTGGGtCGCCGGTTCAAGTCCGGCCCTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna35 (1127890-1127814)	Length: 77 bp
Type: Pro	Anticodon: CGG at 35-37 (1127856-1127854)	Score: 87.69
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGCACGTCGTTCGGGACGACGGGGtCGGAGGTTCGAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna18 (2186731-2186807)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (2186765-2186767)	Score: 81.53
Seq: CGAGGCGTAGCGCAGCCtGGTAGCGCACTACCTTGGGGTGGTAGGGGtCGTGAGTTCAAATCTCGCCGCCTCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna38 (652801-652725)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (652767-652765)	Score: 88.35
Seq: CGGGAAGTAGCGCAGGCcGGTAGCGCACCTGGTTTGGGACCAGGGGGtCGCAGGTTCGAATCCTGTCTTCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna9 (607622-607711)	Length: 90 bp
Type: Ser	Anticodon: CGA at 35-37 (607656-607658)	Score: 66.66
Seq: GGAGAGGTGGCAGAGTGGTtgAATGCGTCGCTCTCGAAAAGCGGAGTACTCGCAAGGGTACCGTGGGTTCGAATCCCACCCTCTTCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr1.trna16 (2181747-2181839)	Length: 93 bp
Type: Ser	Anticodon: GCT at 35-37 (2181781-2181783)	Score: 74.16
Seq: GGAGAGGTGGGTGAGCGGCttAAACCAAGCGTTTGCTAAACGCTCGTACGCCTTAAaAGTGTACCGCGGGTTCGAATCCCGCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr1.trna13 (2045580-2045669)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (2045614-2045616)	Score: 69.21
Seq: GGAACGGTGTCCGAGTGGTtgAAGGAGCACGCCTGGAAAGCGTGTATAGGGGCAACTCTATCGAGGGTTCGAATCCCTCTCGTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr1.trna15 (2181630-2181717)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (2181664-2181666)	Score: 77.43
Seq: GGGGGGTTGGCCGAGTGGTtgAAGGCAACGGTCTTGAAAACCGTAGTGGGGCAACCTACCGGGGGTTCGAATCCCTCACCCCTCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<.>>>>>.......<<<<<<<<<<<<....

chr1.trna32 (1485679-1485605)	Length: 75 bp
Type: Thr	Anticodon: CGT at 33-35 (1485647-1485645)	Score: 90.22
Seq: GCCGATGTAGCTCAGTGGTAGAGCAACTGATTCGTAATCAGTAGGtCGTCGGTTCAAGTCCGACCCTCGGCTCCA
Str: >>>>>.>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<....

chr1.trna27 (2063620-2063546)	Length: 75 bp
Type: Thr	Anticodon: GGT at 33-35 (2063588-2063586)	Score: 90.64
Seq: GCTCCTGTAGCTCAGCGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCATCGGTTCAAGTCCGATCAGGAGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna24 (2063911-2063836)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (2063878-2063876)	Score: 82.64
Seq: GCCACCCTAGCTCAACTGGTAGAGCACCCGACTTGTAATCGGAAGGtTGGGAGTTCGATTCTCCTGGGTGGCTCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr1.trna21 (2406724-2406649)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (2406691-2406689)	Score: 85.45
Seq: GGGTTCTTAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGTAGGtCGAGGGTTCAAGTCCTTCAGGGCCCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna34 (1271616-1271532)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 36-38 (1271581-1271579)	Score: 36.84
Seq: GGATGGGCGGCGACGCGGGagaGTCGCACCCGGCTGTAAACCGGACGCTCAAGCTGAGTCAGTTCGAATCTGACCCCATCCACCA
Str: >>>>>>>..>>>>..........<<<<..>>>>.......<<<<.....>..<....>>>>>.......<<<<<<<<<<<<....

chr1.trna25 (2063789-2063704)	Length: 86 bp
Type: Tyr	Anticodon: GTA at 35-37 (2063755-2063753)	Score: 74.75
Seq: GGGTAGGTGGCCGAGTGGTtaAAGGCGACAGACTGTAAATCTGTTCACGTAAGTGTaCGGCGGTTCGAATCCGCCCCTGCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr1.trna42 (498414-498340)	Length: 75 bp
Type: Val	Anticodon: CAC at 33-35 (498382-498380)	Score: 93.60
Seq: GGGCGGTTAGCTCAGTGGTAGAGCATTCGCTTCACACGCGAAGGGtCGTAGGTTCAAGTCCTATACCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna8 (576983-577057)	Length: 75 bp
Type: Val	Anticodon: GAC at 33-35 (577015-577017)	Score: 83.53
Seq: AGAACCGTAGCTCAGGGGTAGAGCACTACCTTGACACGGTAGGGGtCAGGGGTTCAAATCCCCTCGGTTCTACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna40 (564645-564571)	Length: 75 bp
Type: Val	Anticodon: TAC at 33-35 (564613-564611)	Score: 91.60
Seq: GGGCGATTAGCTCAGCGGTAGAGCGCTCGCCTTACAAGCGATTGGtCGGGGGTTCAAATCCCTCATCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.