tRNAscan-SE Analysis of the Deinococcus radiodurans Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTGTGGCGCAGTTGGGA.GCGCGTCTGAATGGCATTCAGAAG...........GtCAGGGGTTCGAATCCCCTCAGCTCCACCA chr1.trna44-AlaGGC Sc: 89.10  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTCGTAGCTCAGCTGGGA.GAGCGCGTCGTTCGCAATGACGAG...........GtCAGGGGTTCGATCCCCCTCGACTCCACCA chr1.trna30-AlaCGC Sc: 82.20  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGCTTAGCTCAGC.GGGA.GAGCATCCGCTTTGCAAGCGGAGG...........GtCTAGGGTTCGAATCCCTAAGCCTCCACCA chr1.trna6-AlaTGC Sc: 89.27  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGCCCGTAGCTCAGCTGGAtAGAGCGTCTGACTACGGATCAGAAG...........GcCAGGAGTTCGAATCTCTTCGGGCACACCA chr1.trna17-ArgACG Sc: 81.64  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACTCGTAGCTCAGGTGGAtAGAGCGTTGGCCTCCGGAGCCAAAG...........GcCACTGGTTCGAGTCCAGTCGAGTGCACCA chr1.trna2-ArgCCG Sc: 82.30  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACTCGTAGCTCAGTTGGAtAGAGCGGCCCCCTCCTAAGGGGCAG...........GcCACTGGTTCGACTCCAGTCGAGTGCACCA chr1.trna3-ArgCCT Sc: 83.80  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCTTAGCTCAGCTGGAtAGAGCAACCGCCTTCTAAGCGGTCG...........GtCGTAGGTTCGAGTCCTACAGGGTGCACCA chr1.trna5-ArgTCT Sc: 96.44  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCGGCAGTAGCTCAGTGGCA.GAGCATCCGACTGTTAATCGGACG...........GtCGTTGGTTCGACCCCAACCTGCCGAGCCA chr1.trna14-AsnGTT Sc: 86.16  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCGGTAGTGTAGCGGTtA.GCATATCTGCCTGTCACGCAGAAG...........GtCGCGGGTTCAAATCCCGTCCGGACCGCCA chr1.trna47-AspGTC Sc: 85.23  
GGTCCGGTAGTGTAGCGGTtA.GCATATCTGCCTGTCACGCAGAAG...........GtCGCGGGTTCAAATCCCGTCCGGACCGCCA chr1.trna45-AspGTC Sc: 85.23  
>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGTTTCATCGTCCAGCGGCcA.GGATGCCCCGTTGTCTGCGGGAGG...........A.CGCGGGTTCGAGTCCCGCTGGGACCGCCA chr1.trna33-AspGTC Sc: 44.20  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCGCTGTAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTCCA...........CCACCGGTTCGAGTCCGGTCAGCGCCTCCA chr1.trna7-CysGCA Sc: 78.53  



Gln tRNAs


>>>>>>>..>>>>........<<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTATCGTCTAATGGCA.GGACGTCGGTTTCTGGCACCGTTA...........ATCAAGGTTCGAGTCCTTGTACCCCAGCCA chr1.trna29-GlnCTG Sc: 53.58  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>.>>>.......<<<.<<<<<<<<....
AGGGATATGGTGTAATGGTA.GCACAACAGATTTTGGTTCTGTTT...........GTCTAGGTTCGAATCCTTGTATCCCTGCCA chr1.trna46-GlnTTG Sc: 62.39  



Glu tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCCATCGTCTAACGGTtA.GGACACTACCCTTTCAAGGTAGCG...........ATACGGGTTCGAATCCCGTTGGGGTCACCA chr1.trna19-GluTTC Sc: 71.40  



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTAGCTCAGCTGGTA.GAGCACTACCTTGCCAAGGTAGAT...........GtCGCGAGTTCGAATCTCGTCTCCCGCTCCA chr1.trna4-GlyGCC Sc: 93.49  
GCGGGAGTAGCTCAGCTGGTA.GAGCACTACCTTGCCAAGGTAGAT...........GtCGCGAGTTCGAATCTCGTCTCCCGCTCCA chr1.trna22-GlyGCC Sc: 93.49  
GCGGGAGTAGCTCAGCTGGTA.GAGCACTACCTTGCCAAGGTAGAT...........GtCGCGAGTTCGAATCTCGTCTCCCGCTCCA chr1.trna20-GlyGCC Sc: 93.49  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTTGGTA.GAGCGTCAGCTTCCCAAGCTGAAT...........GtCGCGAGTTCGAGTCTCGTTTCCCGCT... chr1.trna26-GlyCCC Sc: 85.69  

>>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>.>>>.......<<<.<<<<<<<<....
GCGGGATTGGTGTAGT.GGTA.GCACAGCAGCCTTCCAAGCTTCTG...........G.CCTCGGTTCGAATCCGTGATCCCGCTCCA chr1.trna39-GlyTCC Sc: 69.64  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGAATTAGCTCAGTCGGTtAGAGCGCCGCTCTGTGGAAGCGGAG...........GcCGTGGGTTCAAGTCCCATATTCCACCCCA chr1.trna36-HisGTG Sc: 82.90  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGAGTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCCCCAGTTCAAGTCTGGGCATTCGCACCA chr1.trna11-IleGAT Sc: 91.86  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>...............<<..>>>>>.......<<<<<.<<<<<<<....
GCTCGGGTGGCGGAATTGGTaGACGCGCACGTTTGAGGGGCGTGTGG...GTAA........CCGTGTGGGTTCAAGTCCCAT.CTCGAGCACCA chr1.trna43-LeuGAG Sc: 56.60  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.>.........<.<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAGGTGGCGGAATTGGTaGACGCACTAGTTTCAGGGACTAGCGCCGC.........GAGGTGTGTGGGTTCAAATCCCAT.CCTCGGCACCA chr1.trna23-LeuCAG Sc: 67.07  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGAGGGTGGCGGAATTGGTaGACGCACTAGACTTAGGATCTAGTATCC.GTA.......GGATGTGAGGGTTCAAGTCCCTT.CTCTCGCACCA chr1.trna37-LeuTAG Sc: 74.05  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>...............<<..>>>>>.......<<<<<.<<<<<<<....
GCCGATATGGCGGAATTGGTaGACGCACTCGACTCAAAATCGAGCGG...GAAA........CCGTAAGGGTTCGAGTCCCTT.TATCGGCACCA chr1.trna12-LeuCAA Sc: 78.83  

>>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>.............<<<..>>>>>.......<<<<<.<<<<<<<....
GTCGGGATGGCGGAATCGGTaGACGCATTCGACTTAAAATCGACCGAG..GCAA.......CTCGTGCGGGTTCAAGTCCCGT.TCCCGGCACCA chr1.trna10-LeuTAA Sc: 69.30  



Lys tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAATTGGCA.GAGCAGCTGACTCTTAATCAGCGG...........GtTGTAGGTTCGATTCCTACACGACCCACCA chr1.trna1-LysCTT Sc: 92.95  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTTGTTAGCTCAAT.GGTA.GAGCAGCTGACTTTTAATCAGCGG...........GtTCTCGGTTCGAGTCCGAGGCGACCCACCA chr1.trna28-LysTTT Sc: 81.66  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<....
GGCGACGTAGCTCAGCT.GGTtA.GAGCGCACGACTCATAATCGTGAG...........GtCGARAGTTCAAGTCTCTCTGTCGCCACCA chr2.trna1-MetCAT Sc: 90.52  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTCTTAGCTCAAC..GGTcA.GAGCAGTCGGCTCATAACCGATTG...........GtTGCCGGTTCAAATCCGGCAGGGCCCACCA chr1.trna41-MetCAT Sc: 85.21  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCAGGGTAGAGCAGTCtGGT.A.GCTCGTCGGGCTCATAACCCGGAG...........GtCGCAGGTTCAAATCCTGTCCCTGCAACCA chr1.trna31-MetCAT Sc: 84.39  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTAGGTAGCTCAGCTGGTAGAGCAAACGACTGAAAATCGTTGG...........GtCGCCGGTTCAAGTCCGGCCCTGGCCACCA chr1.trna48-PheGAA Sc: 95.84  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGAGGCGTAGCGCAGCCtGGTAGCGCACTACCTTGGGGTGGTAGGG...........GtCGTGAGTTCAAATCTCGCCGCCTCGACCA chr1.trna18-ProGGG Sc: 81.53  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGTAGCGCACGTCGTTCGGGACGACGGG...........GtCGGAGGTTCGAATCCTCTCGCCCCGACCA chr1.trna35-ProCGG Sc: 87.69  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGAAGTAGCGCAGGCcGGTAGCGCACCTGGTTTGGGACCAGGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGACCA chr1.trna38-ProTGG Sc: 88.35  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAACGGTGTCCGAGTGGTtgA.AGGAGCACGCCTGGAAAGCGTGTATAGGG.GCAA..CTCTATCGAGGGTTCGAATCCCTC..TCGTTCCGCCA chr1.trna13-SerGGA Sc: 69.21  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTtgA.ATGCGTCGCTCTCGAAAAGCGGAGTACTC.GCAA..GGGTACCGTGGGTTCGAATCCCAC..CCTCTTCGCCA chr1.trna9-SerCGA Sc: 66.66  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>.........<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGGGGGTTGGCCGAGTGGTtgA.AGGCAACGGTCTTGAAAACCGTAGTGGG..GCAA...CCTACCGGGGGTTCGAATCCCTC..ACCCCTCGCCA chr1.trna15-SerTGA Sc: 77.43  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGGTGAGCGGCttA.AACCAAGCGTTTGCTAAACGCTCGTACGCCTTAAaAGTGTACCGCGGGTTCGAATCCCGC..CCTCTCCGCCA chr1.trna16-SerGCT Sc: 74.16  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTCCTGTAGCTCAGC.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCATCGGTTCAAGTCCGATCAGGAGCTCCA chr1.trna27-ThrGGT Sc: 90.64  

>>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<....
GCCGATGTAGCTCAGT.GGTA.GAGCAACTGATTCGTAATCAGTAG...........GtCGTCGGTTCAAGTCCGACCCTCGGCTCCA chr1.trna32-ThrCGT Sc: 90.22  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCACCCTAGCTCAACTGGTA.GAGCACCCGACTTGTAATCGGAAG...........GtTGGGAGTTCGATTCTCCTGGGTGGCTCCA chr1.trna24-ThrTGT Sc: 82.64  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTTCTTAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGTAG...........GtCGAGGGTTCAAGTCCTTCAGGGCCCGCCA chr1.trna21-TrpCCA Sc: 85.45  



Tyr tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>............<<<...>>>>>.......<<<<<.<<<<<<<....
GGGTAGGTGGCCGAGTGGTta.A.AGGCGACAGACTGTAAATCTGTT.CAC.GTAA.......GTGTaCGGCGGTTCGAATCCGCC.CCTGCCCACCA chr1.trna25-TyrGTA Sc: 74.75  
>>>>>>>..>>>>...........<<<<..>>>>.......<<<<.....>............<.....>>>>>.......<<<<<.<<<<<<<....
GGATGGGCGGCGACGCGGGagaG.TCGCACCCGGCTGTAAACCGGACGCTCA..........AGCTG.AGTCAGTTCGAATCTGAC.CCCATCCACCA chr1.trna34-TyrGTA Sc: 36.84  



Val tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGAACCGTAGCTCAGGGGTA.GAGCACTACCTTGACACGGTAGGG...........GtCAGGGGTTCAAATCCCCTCGGTTCTACCA chr1.trna8-ValGAC Sc: 83.53  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGGTTAGCTCAGTGGTA.GAGCATTCGCTTCACACGCGAAGG...........GtCGTAGGTTCAAGTCCTATACCGCCCACCA chr1.trna42-ValCAC Sc: 93.60  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCGATTAGCTCAGCGGTA.GAGCGCTCGCCTTACAAGCGATTG...........GtCGGGGGTTCAAATCCCTCATCGCCCACCA chr1.trna40-ValTAC Sc: 91.60

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.