tRNAscan-SE Analysis of the Dehalococcoides ethenogenes 195 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna24 (1398120-1398195)	Length: 76 bp
Type: Ala	Anticodon: CGC at 34-36 (1398153-1398155)	Score: 89.26
Seq: GGGGCTGTAGCTTAGTTGGGAGAGCGCTGCGTTCGCATCGCAGAGGtCAGGGGTTCGAATCCCCTCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna1 (57782-57857)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (57815-57817)	Score: 77.33
Seq: GGGGCCGTAGTTCACTTGGGAGAACGTTTGACTGGCAGTCAAAAGGtAGAGGGTTCGAATCCCTCCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna46 (309039-308964)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (309006-309004)	Score: 92.88
Seq: GGGGCTGTAGCTTAGTCGGGAGAGCGCCTCCTTTGCAAGGAGGAGGtCAGGGGTTCGAATCCCCTCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (668207-668278)	Length: 72 bp
Type: Arg	Anticodon: CCG at 34-36 (668240-668242)	Score: 79.06
Seq: GCCTCTGTAGCTCAGTGGAtAGAGCACCAGCCTCCGAAGCTGGTGGCGAGAGTTCGAGTCTCTCCAGGGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (1423580-1423656)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (1423614-1423616)	Score: 79.28
Seq: GCCCCTGTAGCTCAGCAGGAtAGAGCAGCGGTTTCCTAAACCGCGTGtCGGGCGTTCGAATCGCCCCAGGGGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1325295-1325372)	Length: 78 bp
Type: Arg	Anticodon: GCG at 36-38 (1325330-1325332)	Score: 92.53
Seq: GCGCTTGTAGCTCAGTTGGAttAGAGCGCAGCCCTGCGAAGGCTGAGGtCGTGGGTTCGAGTCCCACCAAGCGCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna37 (877717-877642)	Length: 76 bp
Type: Arg	Anticodon: TCG at 34-36 (877684-877682)	Score: 87.08
Seq: GCGCCTATAGCTCAGTGGAtAGAGCATCGGTCTTCGGAACCGAGGGtCGTGGGTTCGAATCCCTCTAGGCGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna7 (689105-689181)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (689139-689141)	Score: 87.67
Seq: GTCCCCGTAGCTCAGCTGGAtAGAGCAACTGCCTTCTAAGTAGTGGGtCGAGAGTTCGAATCTCTCCGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (741036-741110)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (741068-741070)	Score: 87.38
Seq: TCCCGAGTAGCTCAGTGGTAGAGCGGGCGGCTGTTAACCGCTTGGtCGTAGGTTCGAATCCTACCTCGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (950330-950406)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (950364-950366)	Score: 71.29
Seq: GGCCCCATGGTGTAGCGGTctAACATGCCACCCTGTCACGGTGGAGAtCGGGGGTTCGAATCCCCCTGGGGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna19 (1308549-1308623)	Length: 75 bp
Type: Cys	Anticodon: GCA at 33-35 (1308581-1308583)	Score: 79.24
Seq: GGCGACGTAGCCAAGTGGCAAGGCAGGGGTCTGCAAAACCCCTATtCAGCGGTTCGAATCCGCTCGTCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (930663-930590)	Length: 74 bp
Type: Gln	Anticodon: CTG at 33-35 (930631-930629)	Score: 67.95
Seq: TGGGGAATCGTCTAGCGGTAGGACAGCGGACTCTGAATCCGTATGGGAAGGTTCGAATCCTTCTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (740952-741025)	Length: 74 bp
Type: Gln	Anticodon: TTG at 33-35 (740984-740986)	Score: 72.97
Seq: TGGCGAGTTGTGTAGTGGTAGCACAGAGGACTTTGAATCCTTATGCCCAGGTTCGAATCCTGGCTCGCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna31 (930576-930500)	Length: 77 bp
Type: Glu	Anticodon: CTC at 35-37 (930542-930540)	Score: 69.78
Seq: GGCGCATTCGTCTAGCGGCccAGGACGCGTCCCTCTCAAGGACGAGAtCACCGGTTCGAATCCGGTATGCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (1453055-1452980)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (1453021-1453019)	Score: 59.05
Seq: GCCCCCATCGTCTAGAGGCccAGGACAGCGGCCTTTCACGCCGTCAACAGGGGTTCGAATCCCCTTGGGGGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna13 (781966-782040)	Length: 75 bp
Type: Gly	Anticodon: CCC at 33-35 (781998-782000)	Score: 85.99
Seq: GCGGGTGTAACTCAGCGGTAGAGTGCTTGCTTCCCAAGCAAGACGtCGCGGGTTCGAATCCCGTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna18 (1308437-1308511)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1308469-1308471)	Score: 87.73
Seq: GCGGAAGTAGTTCAGCGGTAGAATGCCTCCTTGCCAAGGAGGAGGtCGCGAGTTCGAATCTCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna41 (676463-676389)	Length: 75 bp
Type: Gly	Anticodon: TCC at 33-35 (676431-676429)	Score: 85.54
Seq: GCGGGAGTAACTCAGTGGTAGAGTTCCTGCCTTCCAAGCAGGCTGtCGCGGGTTCGAGCCCCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna36 (877809-877734)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (877776-877774)	Score: 72.92
Seq: GTGAGTGTGGCCTAGCGGTtAAGGCACCAGGTTGTGGCCCTGGAGAtCGTGGGTTCAAGTCCCATCACTCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna32 (928116-928040)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (928082-928080)	Score: 85.25
Seq: GGGCCATTAGCTCAGCTGGTtAGAGCGCAGTCCTGATAAGACTGAGGtCCTTGGTTCGAGACCAAGATGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna10 (740836-740922)	Length: 87 bp
Type: Leu	Anticodon: CAA at 34-36 (740869-740871)	Score: 73.28
Seq: GCCGAAGTGGCGGAATGGCaGACGCGGCAGTCTCAAACACTGCTGGGGGTAAACCTCGTGTCGGTTCGAGTCCGACCTTCGGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna21 (1325203-1325289)	Length: 87 bp
Type: Leu	Anticodon: CAG at 34-36 (1325236-1325238)	Score: 61.87
Seq: GCCGAAGTGGCGGAACGGCaGACGCGCTACGTTCAGGGCGTAGTACCTGTAAtAGGTGTGAGAGTTCAAATCTCTCCTTCGGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna17 (1308337-1308423)	Length: 87 bp
Type: Leu	Anticodon: GAG at 34-36 (1308370-1308372)	Score: 55.85
Seq: GCCGAGATGGTGGAATGGCaGACACGCTAGCTTGAGGGGCTAGTGAGTGATGaGCTcGTGGGAGTTCAAATCTCCCTCTCGGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna20 (1309338-1309422)	Length: 85 bp
Type: Leu	Anticodon: TAA at 35-37 (1309372-1309374)	Score: 71.19
Seq: GCCGGGGTGGCGGAATCGGCaGACGCAGCGGACTTAAAATCCGCCGGAGCAATCCtTGTGGGTTCGACCCCCACCCCCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>....<<...>>>>>.......<<<<<<<<<<<<....

chr.trna40 (698745-698661)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (698711-698709)	Score: 70.38
Seq: GGGGGAGTGCCGGAATTGGCaGACGGGCATGACTTAGGATCATGTGTCGAAAGGCGTCGGGGTTCGAGTCCCCGCTTCCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna39 (748083-748011)	Length: 73 bp
Type: Lys	Anticodon: CTT at 34-36 (748050-748048)	Score: 83.21
Seq: GGGCCGATAGCTCAATTGGCAGAGCAATTGACTCTTAATCAATTGGtTGGAGGTTCGAGTCCTCCTCGGCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna38 (832929-832857)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (832896-832894)	Score: 85.28
Seq: GGGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCACAGGTTCGAGACCTGTACGGCCTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna45 (396522-396447)	Length: 76 bp
Type: Met	Anticodon: CAT at 33-35 (396490-396488)	Score: 71.27
Seq: GGCAGCGTAGCTCAGTGGCAGAGCAGGGGACTCATAAGCCCTTGGtCGGTAGTTCAAATtCTACCCGCTGCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<.....>>>>>........<<<<<<<<<<<<....

chr.trna6 (677016-677090)	Length: 75 bp
Type: Met	Anticodon: CAT at 33-35 (677048-677050)	Score: 75.76
Seq: GGGCTCGTAGCTCAAGGGCAGAGCGGGCGGCTCATAACCGCTTGGtCGTAGGTTCGAAACCTACCGAGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna15 (1197631-1197705)	Length: 75 bp
Type: Met	Anticodon: CAT at 33-35 (1197663-1197665)	Score: 82.68
Seq: CGCGGGGTGGAGCAGTGGTAGCTCGTCGGGCTCATAACCCGAAGGcCATAGGTTCGAATCCTATCCCCGCTACCA
Str: .>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna9 (740686-740761)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (740719-740721)	Score: 88.85
Seq: GCCGAGGTAGCTCAGCCGGTAGAGCAGCGGACTGAAAATCCGCGTGtCCCCAGTTCGATCCTGGGCCTCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (1465309-1465386)	Length: 78 bp
Type: Pro	Anticodon: CGG at 36-38 (1465344-1465346)	Score: 82.22
Seq: CGGGGCGTAGCGCAGCCtGGTtAGCGCGCAGCGTTCGGGACGCTGAGGcCGGAAGTTCGAATCTTCTCGCCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna8 (701192-701268)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (701226-701228)	Score: 85.57
Seq: CGGGGTGTAGCGCAGCCtGGTAGCGCACCTGAATGGGGTTCAGGTGGtCGGAGGTTCAAATCCTCTCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna5 (674395-674472)	Length: 78 bp
Type: Pro	Anticodon: TGG at 36-38 (674430-674432)	Score: 89.13
Seq: CGGGGTGTAGCGCAGTCtGGTtAGCGCGCAGCGTTTGGGACGCTGAAGtCGGAGGTTCGAATCCTCTCACCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (666525-666436)	Length: 90 bp
Type: Ser	Anticodon: CGA at 35-37 (666491-666489)	Score: 62.10
Seq: GGAGAGGTGTCCGAGTGGTtgATGGTGCTGCTCTCGAAAAGCGGTCTCCGTGAAAGCGGAGCGTGGGTTCGAATCCCACCCTCTCCGCCA
Str: >>>>>>>...>>>.........<<<..>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna28 (1254974-1254883)	Length: 92 bp
Type: Ser	Anticodon: GCT at 35-37 (1254940-1254938)	Score: 72.94
Seq: GGGGGGGTCGCATAGTGGTctAGTGCGGGCGCCTGCTAAGCGCTTGCCCTGGGAAACCGGGGtCGAGGGTTCGAATCCCTCCCCCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>.>.....<.<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna43 (666401-666312)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (666367-666365)	Score: 61.57
Seq: GGAGAGGTGCTGGAGTGGTctATCAGGCACGCCTGGAAAGCGTGTGTCGCCGCAAGGTGACCGTGGGTTCGAATCCCACCTTCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna44 (527379-527290)	Length: 90 bp
Type: Ser	Anticodon: TGA at 35-37 (527345-527343)	Score: 64.81
Seq: GGAGGGGTGTCCGAGCGGTctATGGTGACGGTCTTGAAAACCGTTGTTCCCGAAAGAGAACCGTGGGTTCGAATCCCACCCCCTCCGCCA
Str: >>>>>>>...>>>.........<<<..>>>>>.......<<<<<.>>>>.>....<.<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna3 (364688-364762)	Length: 75 bp
Type: Thr	Anticodon: CGT at 33-35 (364720-364722)	Score: 85.07
Seq: GCCAGCGTGGCTCAGAGGTAGAGCAGCGGTTTCGTAAACCGCCGGtCGGAGGTTCGAATCCTCTCGCTGGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (913416-913341)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (913383-913381)	Score: 81.62
Seq: GCCCACATAGCTCAGTAGGTAGAGCACGTTCTTGGTAAGAACGGGGtCATCAGTTCGAATCTGATTGTGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna33 (913675-913603)	Length: 73 bp
Type: Thr	Anticodon: TGT at 33-35 (913643-913641)	Score: 65.26
Seq: GCCCGAGTGGCGCAAAGGAAGCGCAACCGACTTGTAATCGGTAGGtTAGcGGGTTCGAATCCCCTCTCGGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>.>>>.......<<<<<<<<<<<<.

chr.trna16 (1308255-1308331)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (1308289-1308291)	Score: 84.12
Seq: AGGAGTGTAGCTCAGTCcGGTAGAGCAGCGGTCTCCAAAACCGCCGGtCGAGGGTTCGAATCCTTCCACTCCTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (913562-913479)	Length: 84 bp
Type: Tyr	Anticodon: GTA at 35-37 (913528-913526)	Score: 62.07
Seq: GGAGAGGTGCCGGAGTGGTtaATCGGAGCAGACTGTAAATCTGCCGCCCTAAGGGCTaCGCAGGTTCGAACCCTGCCCTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>...<<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna2 (149037-149112)	Length: 76 bp
Type: Val	Anticodon: CAC at 34-36 (149070-149072)	Score: 93.40
Seq: GGGTGGTTAGCTCAGTGGTtAGAGCACCTGCTTCACACGCAGGGGGtCAGTGGTTCAAATCCACTACCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (1081725-1081649)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (1081691-1081689)	Score: 90.24
Seq: GGGCGGTTAGCTCAGTTGGTtAGAGCGCAGCGTTGACATCGCTGAGGtCAGTGGTTCGACCCCACTACCGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (1325383-1325459)	Length: 77 bp
Type: Val	Anticodon: TAC at 35-37 (1325417-1325419)	Score: 100.99
Seq: GGGCGGTTAGCTCAGCTGGTtAGAGCACCTGCTTTACACGCAGGGGGtCATAGGTTCGAATCCTATACCGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.