tRNAscan-SE Analysis of the Dehalococcoides ethenogenes 195 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	24	1398120	1398195	View	Ala	CGC	0	0	89.26	70.37	18.89	Both

chr	1	57782	57857	View	Ala	GGC	0	0	77.33	57.12	20.21	Both

chr	46	309039	308964	View	Ala	TGC	0	0	92.88	76.21	16.67	Both

chr	4	668207	668278	View	Arg	CCG	0	0	79.06	58.95	20.11	Both

chr	25	1423580	1423656	View	Arg	CCT	0	0	79.28	50.34	28.94	Both

chr	22	1325295	1325372	View	Arg	GCG	0	0	92.53	67.91	24.62	Both

chr	37	877717	877642	View	Arg	TCG	0	0	87.08	68.95	18.13	Both

chr	7	689105	689181	View	Arg	TCT	0	0	87.67	62.17	25.50	Both

chr	12	741036	741110	View	Asn	GTT	0	0	87.38	59.69	27.69	Both

chr	14	950330	950406	View	Asp	GTC	0	0	71.29	48.33	22.96	Both

chr	19	1308549	1308623	View	Cys	GCA	0	0	79.24	49.97	29.27	Both

chr	30	930663	930590	View	Gln	CTG	0	0	67.95	42.51	25.44	Both

chr	11	740952	741025	View	Gln	TTG	0	0	72.97	44.53	28.44	Both

chr	31	930576	930500	View	Glu	CTC	0	0	69.78	43.56	26.22	Both

chr	27	1453055	1452980	View	Glu	TTC	0	0	59.05	36.57	22.48	Both

chr	13	781966	782040	View	Gly	CCC	0	0	85.99	64.29	21.70	Both

chr	18	1308437	1308511	View	Gly	GCC	0	0	87.73	64.20	23.53	Both

chr	41	676463	676389	View	Gly	TCC	0	0	85.54	64.69	20.85	Both

chr	36	877809	877734	View	His	GTG	0	0	72.92	46.45	26.47	Both

chr	32	928116	928040	View	Ile	GAT	0	0	85.25	52.77	32.48	Both

chr	10	740836	740922	View	Leu	CAA	0	0	73.28	36.24	37.04	Both

chr	21	1325203	1325289	View	Leu	CAG	0	0	61.87	27.11	34.76	Both

chr	17	1308337	1308423	View	Leu	GAG	0	0	55.85	23.62	32.23	Both

chr	20	1309338	1309422	View	Leu	TAA	0	0	71.19	41.12	30.07	Both

chr	40	698745	698661	View	Leu	TAG	0	0	70.38	44.98	25.40	Both

chr	39	748083	748011	View	Lys	CTT	0	0	83.21	62.18	21.03	Both

chr	38	832929	832857	View	Lys	TTT	0	0	85.28	65.60	19.68	Both

chr	45	396522	396447	View	Met	CAT	0	0	71.27	51.03	20.24	Eufind
chr	6	677016	677090	View	Met	CAT	0	0	75.76	50.33	25.43	Both
chr	15	1197631	1197705	View	Met	CAT	0	0	82.68	56.71	25.97	Both

chr	9	740686	740761	View	Phe	GAA	0	0	88.85	61.42	27.43	Both

chr	26	1465309	1465386	View	Pro	CGG	0	0	82.22	54.65	27.57	Both

chr	8	701192	701268	View	Pro	GGG	0	0	85.57	64.87	20.70	Both

chr	5	674395	674472	View	Pro	TGG	0	0	89.13	64.43	24.70	Both

chr	42	666525	666436	View	Ser	CGA	0	0	62.10	34.37	27.73	Eufind

chr	28	1254974	1254883	View	Ser	GCT	0	0	72.94	47.21	25.73	Both

chr	43	666401	666312	View	Ser	GGA	0	0	61.57	34.79	26.78	Both

chr	44	527379	527290	View	Ser	TGA	0	0	64.81	30.40	34.41	Eufind

chr	3	364688	364762	View	Thr	CGT	0	0	85.07	60.35	24.72	Both

chr	35	913416	913341	View	Thr	GGT	0	0	81.62	47.48	34.14	Both

chr	33	913675	913603	View	Thr	TGT	0	0	65.26	45.42	19.84	Both

chr	16	1308255	1308331	View	Trp	CCA	0	0	84.12	59.76	24.36	Both

chr	34	913562	913479	View	Tyr	GTA	0	0	62.07	33.07	29.00	Both

chr	2	149037	149112	View	Val	CAC	0	0	93.40	75.03	18.37	Both

chr	29	1081725	1081649	View	Val	GAC	0	0	90.24	65.22	25.02	Both

chr	23	1325383	1325459	View	Val	TAC	0	0	100.99	80.70	20.29	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.