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tRNAscan-SE Analysis of Debaryomyces hansenii CBS767

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrA 1 83377 83448 Val CAC actcatagaa tttttttata 0 0 64.96 33.47 31.49 Both chrA 2 387250 387320 Gly GCC caagaaaaac tttttttttc 0 0 62.33 35.64 26.69 Both chrA 3 587348 587420 Thr AGT tttcagttat atttttttgg 0 0 74.95 51.61 23.34 Both chrA 4 992713 992642 Gly TCC catataattc ttcttttttt 0 0 66.01 52.04 13.97 Both chrA 5 992394 992323 Gly TCC gggtaaatac tttttttttg 0 0 66.01 52.04 13.97 Both chrA 6 992249 992177 Ala CGC gggtaaactc tttgtttttt 0 0 76.18 61.66 14.52 Both chrA 7 905338 905267 His GTG ctcatagacg ttttttttag 0 0 61.27 34.71 26.56 Both chrA 8 753617 753545 Arg CCT gccgagatta gatttttttt 0 0 66.21 44.19 22.02 Both chrA 9 528050 527950 Lys TTT tgaaggacaa tccaattttt 528013 527986 72.25 48.05 24.20 Both chrA 10 366307 366234 Asn GTT ataactgtta gttttttttt 0 0 74.40 47.60 26.80 Both chrA 11 330445 330364 Leu CAA tataaaaaga atattttttt 0 0 68.15 43.96 24.19 Both chrA 12 169297 169214 Leu TAA tgcactaagt ttattttttt 0 0 67.29 37.25 30.04 Both chrA 13 88285 88204 Leu CAA tcaaataaga ttattttttt 0 0 68.15 43.96 24.19 Both chrA 14 78030 77934 Arg ACG gaaagcttcg cttttttttt 77993 77970 63.91 43.50 20.41 Both   chrB 1 70427 70500 Ile AAT ctcaataatc atttttttta 0 0 72.18 40.86 31.32 Both chrB 2 256845 256917 Thr AGT aatatattac tttttttatt 0 0 74.95 51.61 23.34 Both chrB 3 390006 390078 Arg TCT gagaaaatct catatttttt 0 0 72.29 60.17 12.12 Both chrB 4 428320 428393 Ile AAT tttcaagaaa tttctctcaa 0 0 72.18 40.86 31.32 Both chrB 5 428412 428484 Ala AGC aattcacaca tttttttatt 0 0 72.43 48.64 23.79 Both chrB 6 434427 434500 Asn GTT ctcagttccc tttacatttt 0 0 74.40 47.60 26.80 Both chrB 7 507661 507749 Met CAT attagaagtg tttttttttt 507698 507713 61.54 39.30 22.24 Both chrB 8 534070 534141 Thr CGT ctgaactcgt acgtgtttta 0 0 83.53 61.08 22.45 Both chrB 9 607938 608019 Leu CAG gccattagac ccattttttt 0 0 70.38 44.72 25.66 Both chrB 10 683339 683410 Gln TTG tcaactattc tttttttttg 0 0 66.25 44.79 21.46 Both chrB 11 724238 724322 Lys CTT cagattagca actatatttt 724275 724286 68.32 49.77 18.55 Both chrB 12 726177 726261 Lys CTT cagattagca actttttttt 726214 726225 68.32 49.77 18.55 Both chrB 13 726560 726644 Lys CTT caaattagca actttttttt 726597 726608 68.06 52.99 15.07 Both chrB 14 727465 727549 Lys CTT cagattagca actttttttt 727502 727513 68.32 49.77 18.55 Both chrB 15 727848 727932 Lys CTT caaattagca actttttttt 727885 727896 71.02 52.47 18.55 Both chrB 16 728759 728843 Lys CTT cagattagca tctatttttt 728796 728807 68.32 49.77 18.55 Both chrB 17 729031 729115 Lys CTT cagattagca actatatttt 729068 729079 68.32 49.77 18.55 Both chrB 18 729902 729986 Lys CTT cagattagca actatttttt 729939 729950 68.32 49.77 18.55 Both chrB 19 877503 877576 Val AAC tccaataatt gttagtaggc 0 0 69.07 46.56 22.51 Both chrB 20 877585 877655 Gly GCC cagttagtag tattttttta 0 0 62.33 35.64 26.69 Both chrB 21 880760 880831 Cys GCA ttggaattta aaaatttttt 0 0 75.04 50.16 24.88 Both chrB 22 872783 872700 Leu TAA aatcaaaaat ttattttttt 0 0 67.29 37.25 30.04 Both chrB 23 699170 699080 Phe GAA aaagaaatct attttctttt 699133 699116 67.44 39.83 27.61 Both chrB 24 518574 518491 Leu TAA ttttattatt ttattttttt 0 0 67.29 37.25 30.04 Both   chrC 1 194069 194153 Arg CCG tcctagattc tatcgcaact 194107 194117 56.96 41.58 15.38 Eufind chrC 2 312472 312554 Leu AAG gatattatct ccagtcgatt 0 0 64.41 38.14 26.27 Both chrC 3 333684 333769 Lys CTT aagattatta ctttaatttt 333721 333733 71.01 52.46 18.55 Both chrC 4 597290 597390 Lys TTT attaggacaa tccttatttt 597327 597354 72.25 48.05 24.20 Both chrC 5 620791 620887 Arg ACG ttaagcttcg cttacatttt 620828 620851 63.91 43.50 20.41 Both chrC 6 736565 736638 Asn GTT ttaagagaat tcttctcttt 0 0 74.40 47.60 26.80 Both chrC 7 925207 925280 Ile AAT ctcagaaatc tttctctcat 0 0 72.18 40.86 31.32 Both chrC 8 925299 925371 Ala AGC atttcacaca attatttttt 0 0 72.43 48.64 23.79 Both chrC 9 1377691 1377764 Ile AAT ataagaaatc tttctctcat 0 0 72.18 40.86 31.32 Both chrC 10 1377783 1377855 Ala AGC atttcacaca attgtttttt 0 0 72.43 48.64 23.79 Both chrC 11 1457767 1457849 Leu AAG ataggaattg ttatccatta 0 0 63.30 34.53 28.77 Both chrC 12 1509851 1509921 Gly GCC tcaacaatta tttttttttc 0 0 62.33 35.64 26.69 Both chrC 13 1271603 1271532 Glu TTC ttatgaatta tctttttttt 0 0 60.44 35.40 25.04 Both chrC 14 1041553 1041462 Ser GCT tcaacaataa ccatttgatt 1041516 1041507 67.51 40.80 26.71 Both chrC 15 972015 971942 Val AAC aaatataaat tttttttatt 0 0 69.07 46.56 22.51 Both chrC 16 906886 906815 Met CAT aagaagttaa gctttgactt 0 0 76.46 50.62 25.84 Both chrC 17 663845 663773 Ala TGC taaaagttaa cttttttttg 0 0 80.01 63.08 16.93 Eufind chrC 18 628561 628478 Leu TAA aaatacaaat ttattttttt 0 0 67.29 37.25 30.04 Both chrC 19 612928 612857 Asp GTC caagtaaaca catttctttc 0 0 60.37 34.37 26.00 Both chrC 20 612844 612774 Gly GCC tttctttcta tatttttttg 0 0 62.33 35.64 26.69 Both chrC 21 602489 602417 Thr AGT ttaaatttaa taattttttg 0 0 74.95 51.61 23.34 Both chrC 22 578054 577983 Gln TTG acacttacca tttttttatt 0 0 66.25 44.79 21.46 Both chrC 23 330945 330872 Asn GTT ccagaaatat tttctattct 0 0 74.40 47.60 26.80 Both chrC 24 223894 223798 Arg ACG ttaagcttcg cttacttttt 223857 223834 63.91 43.50 20.41 Both chrC 25 222127 222031 Arg ACG ttaagcttcg cttacttttt 222090 222067 63.91 43.50 20.41 Both   chrD 1 174792 174863 Asp GTC gaagaaaata catctttttt 0 0 60.37 34.37 26.00 Both chrD 2 382567 382639 Arg TCT atatcaaatt ctttattttt 0 0 75.37 61.62 13.75 Both chrD 3 403175 403264 Tyr GTA acaagaaatc tttcctcaca 403213 403228 60.58 34.08 26.50 Both chrD 4 403283 403355 Thr AGT catttctgct tttttttttc 0 0 74.95 51.61 23.34 Both chrD 5 407241 407314 Ile AAT tcaggaattc tttctctcaa 0 0 72.18 40.86 31.32 Both chrD 6 407333 407405 Ala AGC aattcacaca aacttttttt 0 0 72.43 48.64 23.79 Both chrD 7 581913 581985 Thr AGT tttagattaa tttttttgat 0 0 74.95 51.61 23.34 Both chrD 8 587869 587940 Glu TTC ataagaattc ggtttaattt 0 0 60.44 35.40 25.04 Both chrD 9 614291 614363 Arg TCT ataattaatt ctttttttta 0 0 75.37 61.62 13.75 Both chrD 10 855787 855868 Ser TGA ttctaaatta ttattttttt 0 0 80.90 48.32 32.58 Both chrD 11 880697 880767 Gly GCC caacgaacta tttaattttt 0 0 62.33 35.64 26.69 Both chrD 12 1516831 1516902 Asp GTC taaaaaaaca aatttttttg 0 0 60.37 34.37 26.00 Both chrD 13 1531247 1531317 Gly GCC atcaaaaaga attttttttc 0 0 62.33 35.64 26.69 Both chrD 14 1471902 1471831 Gly TCC tttcaataaa tttttttttg 0 0 67.82 50.25 17.57 Both chrD 15 1451481 1451410 Glu TTC tcaacaaata tatttttttg 0 0 60.44 35.40 25.04 Both chrD 16 1431725 1431636 Tyr GTA cgtaagatct atctattttt 1431687 1431672 60.58 34.08 26.50 Both chrD 17 1423043 1422943 Lys TTT cgaaggacca ttctattttt 1423006 1422979 72.25 48.05 24.20 Both chrD 18 1420603 1420530 Val AAC tcactaagaa tctttttttt 0 0 69.07 46.56 22.51 Both chrD 19 692895 692788 Pro TGG accaagatta ttcttttttt 692859 692824 62.05 40.25 21.80 Both chrD 20 629187 629116 Glu TTC ttataaattc aattactttt 0 0 60.44 35.40 25.04 Both chrD 21 499525 499454 Met CAT acaacggatc ctttttttat 0 0 76.46 50.62 25.84 Both chrD 22 366806 366735 Glu CTC cacaagaaag aacatttctt 0 0 64.26 34.60 29.66 Both chrD 23 355967 355886 Leu CAA tataagaaat ttatttttta 0 0 68.15 43.96 24.19 Both chrD 24 161020 160937 Leu TAA aatgtaaaat ttattttttt 0 0 67.29 37.25 30.04 Both   chrE 1 223765 223865 Lys TTT gctaggacaa tccttttttt 223802 223829 72.25 48.05 24.20 Both chrE 2 243379 243450 Asp GTC caagaaaaca cacttctagc 0 0 60.37 34.37 26.00 Both chrE 3 243459 243529 Gly GCC agcacttcta tttttttgct 0 0 62.33 35.64 26.69 Both chrE 4 351311 351383 Thr AGT catgaaaatc gttttttttc 0 0 74.95 51.61 23.34 Both chrE 5 390561 390634 Asn GTT actaaagtac tctttatttt 0 0 74.40 47.60 26.80 Both chrE 6 403439 403510 Glu TTC ttatgaatta tttctttttt 0 0 57.78 32.74 25.04 Both chrE 7 568774 568845 His GTG ctagaaattc gagtattctc 0 0 61.27 34.71 26.56 Both chrE 8 643885 643956 Gln TTG tcaactattc attttttttc 0 0 66.25 44.79 21.46 Both chrE 9 781524 781596 Arg TCT acaactagct tatgtttttt 0 0 75.37 61.62 13.75 Both chrE 10 803889 803961 Ala TGC atataaattg attttttttc 0 0 80.01 63.08 16.93 Eufind chrE 11 909126 909216 Phe GAA ttctaataat tttttttttc 909163 909180 67.44 39.83 27.61 Both chrE 12 941037 941110 Val AAC tataagaaat ttttttttct 0 0 69.07 46.56 22.51 Both chrE 13 982600 982671 Gln TTG atatacacaa ttcttttttt 0 0 66.25 44.79 21.46 Both chrE 14 1031301 1031391 Phe GAA agtaaagtat ttttttttat 1031338 1031355 68.08 40.47 27.61 Both chrE 15 1369579 1369650 Trp CCA cttcaagggt attccttttt 0 0 70.45 54.82 15.63 Both chrE 16 1417174 1417257 Leu TAA tttcacaaat ttattctttt 0 0 67.29 37.25 30.04 Both chrE 17 1477365 1477446 Ser AGA ccacaactaa ttattttttt 0 0 82.48 48.67 33.81 Both chrE 18 1545962 1546035 Val AAC tttcagaaat ttctttttct 0 0 69.07 46.56 22.51 Both chrE 19 1548747 1548820 Val AAC tttgagaaat ttctttttct 0 0 68.33 47.53 20.80 Both chrE 20 1677404 1677485 Ser AGA tcacgaacaa tcataacatt 0 0 82.48 48.67 33.81 Both chrE 21 1688996 1689103 Pro TGG aacaataata atttttttat 1689032 1689067 62.05 40.25 21.80 Both chrE 22 1781406 1781487 Ser AGA caatctatta tcattttttt 0 0 82.48 48.67 33.81 Both chrE 23 1794023 1794104 Ser TGA ccaagaataa ccacttcttt 0 0 79.82 45.55 34.27 Both chrE 24 1856727 1856815 Met CAT ttctcatatt attgtttttt 1856764 1856779 62.03 39.79 22.24 Both chrE 25 1899413 1899486 Val AAC tctcagagat ttttttttgc 0 0 69.07 46.56 22.51 Both chrE 26 1907725 1907652 Ile AAT attcaaaata tttttttttc 0 0 72.18 40.86 31.32 Both chrE 27 1886713 1886642 Glu TTC atataaaata tatattttta 0 0 60.44 35.40 25.04 Both chrE 28 1773268 1773187 Ser AGA tcacgaacaa tcattttttt 0 0 82.48 48.67 33.81 Both chrE 29 1771501 1771420 Ser AGA tcacgaacaa tcattttttt 0 0 82.48 48.67 33.81 Both chrE 30 1696475 1696394 Ser TGA ttaagaataa ccacttcttt 0 0 79.82 45.55 34.27 Both chrE 31 1686617 1686544 Val AAC tttcagaaat gtttcttttt 0 0 69.07 46.56 22.51 Both chrE 32 1684803 1684722 Ser AGA ctcagagtta ttattttctt 0 0 82.48 48.67 33.81 Both chrE 33 1476224 1476152 Ala AGC tctataaatt tttttttata 0 0 72.43 48.64 23.79 Both chrE 34 1401261 1401189 Thr AGT tttatatgtc ttattttttt 0 0 74.95 51.61 23.34 Both chrE 35 1309190 1309119 His GTG acatgaaaga ttttttttgc 0 0 61.27 34.71 26.56 Both chrE 36 1307363 1307291 Thr AGT agagaagtgc ccattttttc 0 0 74.95 51.61 23.34 Both chrE 37 1264875 1264775 Lys TTT acaaggacaa tccatttttt 1264838 1264811 72.39 48.20 24.19 Both chrE 38 1240648 1240576 Arg TCT ataacaatct tgtttgtgcg 0 0 75.37 61.62 13.75 Both chrE 39 1240568 1240478 Phe GAA gtttgtttgt taatttttta 1240531 1240514 68.08 40.47 27.61 Both chrE 40 796577 796506 His GTG atcaagatct tttatttttt 0 0 61.27 34.71 26.56 Both chrE 41 687355 687248 Pro TGG ctcaacagac gatttttttt 687319 687284 61.55 39.75 21.80 Both chrE 42 604662 604555 Pro TGG tatataaatt atttaatttt 604626 604591 61.90 40.10 21.80 Both chrE 43 443237 443164 Asn GTT tagaaaatac ttattttttt 0 0 74.40 47.60 26.80 Both chrE 44 297093 297022 Gln TTG tcaactattc tttttttaat 0 0 66.25 44.79 21.46 Both chrE 45 274017 273946 Asp GTC caagaaaaca cacttctagc 0 0 60.37 34.37 26.00 Both chrE 46 273937 273867 Gly GCC agcacttcta ttttttttct 0 0 62.33 35.64 26.69 Both chrE 47 269465 269392 Asn GTT ttgaaaatac tatatttttt 0 0 74.40 47.60 26.80 Both chrE 48 227856 227785 Glu TTC tcaagaagac ttcttttttt 0 0 60.44 35.40 25.04 Both chrE 49 214155 214084 Asp GTC tccaacaaca tatttttttc 0 0 60.37 34.37 26.00 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrF 1 201306 201379 Ile AAT caatagttaa tttctcttaa 0 0 72.18 40.86 31.32 Both chrF 2 201398 201470 Ala AGC aattcacaca ttttttttca 0 0 72.43 48.64 23.79 Both chrF 3 474733 474821 Met CAT caacaaggac tttttttttt 474770 474785 62.03 39.80 22.23 Both chrF 4 500946 501016 Gly CCC gaagattgat attttttttt 0 0 60.42 43.64 16.78 Both chrF 5 537362 537451 Tyr GTA ttcgaaattt atttttttta 537400 537415 60.44 33.94 26.50 Both chrF 6 566311 566383 Arg TCT ataacaatct tgtatgtgcg 0 0 75.37 61.62 13.75 Both chrF 7 566391 566481 Phe GAA gtttgtatgt ttttttttct 566428 566445 68.08 40.47 27.61 Both chrF 8 618222 618294 Arg TCT gcaataactc tgtatgtgcg 0 0 75.37 61.62 13.75 Both chrF 9 618302 618392 Phe GAA gtttgtatgt tttttttgca 618339 618356 68.08 40.47 27.61 Both chrF 10 637970 638077 Pro TGG ttcaagtatc ttctttttta 638006 638041 61.41 39.61 21.80 Both chrF 11 804359 804430 Cys GCA gcaagaacac tgttacttct 0 0 75.04 50.16 24.88 Both chrF 12 891089 891161 Ala TGC ttaagaatag ttcttttttt 0 0 80.01 63.08 16.93 Eufind chrF 13 984389 984480 Ser CGA gatataaagc ttattttttt 984426 984436 71.33 42.55 28.78 Both chrF 14 1059455 1059527 Ala TGC agtataaaaa tttttttgac 0 0 80.01 63.08 16.93 Eufind chrF 15 1838918 1838989 Met CAT ataaataatt ttattttttt 0 0 75.00 48.10 26.90 Both chrF 16 2016770 2016853 Leu TAA tctataaaat ttattttttt 0 0 67.29 37.25 30.04 Both chrF 17 2072802 2072873 Pro AGG acttgcaaga ttttgtactg 0 0 69.10 49.82 19.28 Both chrF 18 2042649 2042578 Gln CTG tgtactaaca ttcttttttg 0 0 70.01 48.39 21.62 Both chrF 19 1943353 1943270 Leu TAA attaatatat ttattttttc 0 0 67.29 37.25 30.04 Both chrF 20 1943103 1943032 Glu TTC tctataatta atttgttttt 0 0 60.44 35.40 25.04 Both chrF 21 1843547 1843476 Cys GCA aaaaaagcta tgtcgttttt 0 0 75.04 50.16 24.88 Both chrF 22 1556706 1556585 Ile TAT gtcagcaggt tttgtccttt 1556669 1556621 57.85 39.54 18.31 Both chrF 23 1550053 1549980 Val AAC cgtatagatt tttttttttt 0 0 69.07 46.56 22.51 Both chrF 24 1233962 1233891 Trp CCA ctccaagggt attcctttat 0 0 70.45 54.82 15.63 Both chrF 25 1183830 1183741 Tyr GTA cgcagaaatc tttccttttt 1183792 1183777 59.13 31.56 27.57 Both chrF 26 1047120 1047032 Met CAT ttggataagt tttgtttttt 1047083 1047068 62.03 39.80 22.23 Both chrF 27 788396 788305 Val TAC aacaacatcc tgttgtattt 788359 788341 62.13 34.78 27.35 Both chrF 28 453565 453476 Tyr GTA cgtgagattc atctattttt 453527 453512 60.58 34.08 26.50 Both chrF 29 436378 436307 Trp CCA tctcaagggt attcctttat 0 0 70.45 54.82 15.63 Both   chrG 1 152009 152082 Arg TCT acaacaaaat cttttttttt 0 0 65.86 52.11 13.75 Both chrG 2 154726 154798 Arg TCT acaacaaaat cttccccctt 0 0 75.37 61.62 13.75 Both chrG 3 184810 184895 Lys CTT cagataagaa taatcttatt 184847 184859 71.94 53.39 18.55 Both chrG 4 247171 247244 Ile AAT tcagaaattt tttctctcta 0 0 72.18 40.86 31.32 Both chrG 5 247263 247335 Ala AGC tatttacaca attttttttt 0 0 72.43 48.64 23.79 Both chrG 6 634869 634940 Glu TTC cagtaatttt gattttcttt 0 0 60.44 35.40 25.04 Both chrG 7 705002 705086 Lys CTT cagattagca actatttttt 705039 705050 68.32 49.77 18.55 Both chrG 8 707109 707193 Lys CTT cagattagca actatatttt 707146 707157 68.32 49.77 18.55 Both chrG 9 713305 713376 Asp GTC caagaaaaca tctttttttt 0 0 60.37 34.37 26.00 Both chrG 10 942461 942532 Asp GTC tttaacaaag catttctttc 0 0 60.37 34.37 26.00 Both chrG 11 942545 942615 Gly GCC tttctttcta tttttttttg 0 0 62.33 35.64 26.69 Both chrG 12 971707 971780 Val AAC ttcaagaaat ttctttttat 0 0 69.07 46.56 22.51 Both chrG 13 1026813 1026894 Ser AGA taaagaaaat tcattatttt 0 0 82.48 48.67 33.81 Both chrG 14 1176129 1176250 Ile TAT actaacaggt tttgtctttt 1176166 1176214 61.11 41.10 20.01 Both chrG 15 1341956 1342027 Gly TCC catccaaatc tatttttaca 0 0 66.01 52.04 13.97 Both chrG 16 1370896 1370968 Arg TCT gtaaataatt tgatttatgc 0 0 75.37 61.62 13.75 Both chrG 17 1370977 1371067 Phe GAA tttgatttat taattttttg 1371014 1371031 68.72 41.11 27.61 Both chrG 18 1472471 1472542 Trp CCA tgataagggt attcctttct 0 0 70.45 54.82 15.63 Both chrG 19 1555824 1555895 His GTG gaacaaatac gtttttattt 0 0 61.27 34.71 26.56 Both chrG 20 1635410 1635501 Ser GCT tgtcatatta ccatttattt 1635447 1635456 67.51 40.80 26.71 Both chrG 21 1669625 1669696 Asp GTC acataaaaca cttttctttc 0 0 60.37 34.37 26.00 Both chrG 22 1669709 1669779 Gly GCC tttctttcta ttcttttttg 0 0 62.33 35.64 26.69 Both chrG 23 1722288 1722359 Gln TTG tgcaatctca actttttttt 0 0 66.25 44.79 21.46 Both chrG 24 1807553 1807660 Pro TGG tatataatta aatatttttt 1807589 1807624 62.05 40.25 21.80 Both chrG 25 1809417 1809517 Lys TTT tcaggaacta ttctattttt 1809454 1809481 72.25 48.05 24.20 Both chrG 26 1863796 1863892 Arg ACG acaagcttcg cttaattttt 1863833 1863856 63.91 43.50 20.41 Both chrG 27 1894265 1894348 Leu TAA caagtaattt ttatttttta 0 0 67.29 37.25 30.04 Both chrG 28 1950795 1950866 Thr TGT tcataaatac ttttttttta 0 0 84.97 61.17 23.80 Both chrG 29 1930153 1930072 Leu CAA aagataacaa ttatcttttt 0 0 68.15 43.96 24.19 Both chrG 30 1890473 1890402 Cys GCA aaaataataa tgagagtttt 0 0 75.04 50.16 24.88 Both chrG 31 1552436 1552365 Thr TGT agcaaaataa ggcaattttt 0 0 82.34 60.25 22.09 Both chrG 32 1518513 1518440 Asn GTT aacaaaatac catttttttt 0 0 74.40 47.60 26.80 Both chrG 33 1418617 1418546 Gln TTG gaaataaatc atatctaatt 0 0 59.60 41.75 17.85 Both chrG 34 1413752 1413679 Val AAC tcataagaaa ttcttttttt 0 0 67.81 44.52 23.29 Both chrG 35 1190051 1189981 Gly GCC aaaacaaaac ttcttttttt 0 0 62.33 35.64 26.69 Both chrG 36 1074936 1074863 Ile AAT cgcacaaagt tttatttttt 0 0 72.18 40.86 31.32 Both chrG 37 1044008 1043918 Phe GAA catagaaatc ttcttttttt 1043971 1043954 67.44 39.83 27.61 Both chrG 38 887852 887752 Lys TTT ttatggacaa tccttttttt 887815 887788 72.25 48.05 24.20 Both chrG 39 802978 802871 Pro TGG tcaacaattt aattattttt 802942 802907 62.05 40.25 21.80 Both chrG 40 796853 796764 Tyr GTA tatccaattc ttggctatta 796815 796800 60.58 34.08 26.50 Both   chrMT 1 2480 2551 Ala TGC ggggtttctt atatttttat 0 0 50.88 18.64 32.24 Both chrMT 2 3329 3399 Asn GTT gcaagaaaat tcgtatgaat 0 0 47.03 18.39 28.64 Both chrMT 3 12797 12867 Arg TCT ggagaaggaa actattcgat 0 0 49.27 17.42 31.85 Both chrMT 4 13006 13077 Pseudo TAC ttatattcat ttcctccctt 0 0 43.26 4.23 39.03 Both chrMT 5 13238 13308 SeC TCA aagggatcca tgcctctgta 0 0 42.71 0.00 0.00 Both chrMT 6 13310 13381 Phe GAA ttactcttgt ttttttttta 0 0 52.32 47.24 5.08 Eufind chrMT 7 13447 13518 Lys TTT tgtaattatt ttccttaatt 0 0 50.55 27.44 23.11 Eufind chrMT 8 14490 14560 Ile GAT ggagagaaaa tgagtcgttg 0 0 57.84 26.16 31.68 Both chrMT 9 14642 14714 Asp GTC agaataaaaa ttggatagct 0 0 34.28 12.31 21.97 Both chrMT 10 14799 14870 Arg ACG ggctatccgt ttacattata 0 0 49.90 17.07 32.83 Both chrMT 11 25973 26055 Ser TGA tagaggtaaa atatgactat 0 0 56.15 20.58 35.57 Both chrMT 12 26058 26137 Pseudo TAG tgcatccgat gacaagatat 0 0 35.92 -0.10 36.02 Both chrMT 13 27648 27719 Met CAT tatataggta tttaagaaaa 0 0 42.85 17.92 24.93 Eufind chrMT 14 27763 27833 Met CAT gagaatataa atataattaa 0 0 57.83 22.83 35.00 Both chrMT 15 19308 19228 Pseudo TAA cttaaggtaa aggggaggtt 0 0 34.16 4.27 29.89 Both chrMT 16 19139 19069 His GTG ctcctcagag cagcttaggt 0 0 39.89 20.41 19.48 Both chrMT 17 19066 18995 Met CAT tggttatcca gtcgtataag 0 0 58.05 40.25 17.80 Both chrMT 18 18994 18922 Thr TGT gccttaggca ttttgaccac 0 0 34.53 12.59 21.94 tRNAscan chrMT 19 18917 18847 Glu TTC acgacatttt tatgtgacaa 0 0 40.77 17.91 22.86 Eufind chrMT 20 18843 18772 Pseudo TCC gtggttatat tgtttccatt 0 0 41.24 8.37 32.87 Both chrMT 21 18570 18498 Pseudo TGG cggtttacta tagatttttt 0 0 22.18 -5.68 27.86 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.