GtRNAdb

tRNAscan-SE Analysis of Cryptococcus neoformans var JEC21

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>.>..>>>>.........<<<<.>>>>>..............................<<<<<................>>>>>.......<<<<<<.<<<<<. GGGGGTGTAGCTCATTTGGCA.GAGCGCGTCATTAGCAttttaacatttattaaaattac.TTGACGAG...........GtACTGGGTTCAATTCCCAGCTCCTCCA chr1.trna5-AlaAGC Sc: 58.51 GGGGGTGTAGCTCATTTGGCA.GAGCGCGTCATTAGCAttttattgcaattaaaattc...TTGACGAG...........GtACTGGGTTCAATTCCCAGCTCCTCCA chr1.trna6-AlaAGC Sc: 57.48 GGGGGTGTAGCTCATTTGGCA.GAGCGCGTCATTAGCAttttatctaaactttaagatcatTTGACGAG...........GtACTGGGTTCAATTCCCAGCTCCTCCA chr1.trna4-AlaAGC Sc: 57.37 GGGGGTGTAGCTCATTTGGCA.GAGCGCGTCATTAGCAtcttctaaacaaaaggttc....TTGACGAG...........GtACTGGGTTCAATTCCCAGCTCCTCCA chr9.trna17-AlaAGC Sc: 55.58 GGGGGTGTAGCTCATTTGGCA.GAGCGCGTCATTAGCAtcttcttttcgaaagattc....TTGACGAG...........GtACTGGGTTCAATTCCCAGCTCCTCCA chr9.trna16-AlaAGC Sc: 55.16 GGGGGTGTAGCTCATTTGGCA.GAGCGCGTCATTAGCAtcttcgtattaggttctgat...TTGACGAG...........GtACTGGGTTCAATTCCCAGCTCCTCCA chr6.trna12-AlaAGC Sc: 54.78 GGGGGTGTAGCTCATTTGGCA.GAGCGCGTCATTAGCAtcttcttccgtccataggttct.TTGACGAG...........GtACTGGGTTCAATTCCCAGCTCCTCCA chr11.trna3-AlaAGC Sc: 52.85 >>>>>.>..>>>>.........<<<<.>>>>>..............................<<<<<................>>>>>.......<<<<<<.<<<<<. GGGGGTGTGGTCAAGG.GGTA.TGACAAGCGATCCGCAtttaggacgctt...........TTCGCTTA...........G.CCTGGGTTCGAGTCCCAGCTCCTCCA chr5.trna2-AlaCGC Sc: 47.81 GGGGGTGTGGTCAAGG.GGTA.TGACAAGCGATCCGCAttcaggacgctt...........TTCGCTTA...........G.CCTGGGTTCGAGTCCCAGCTCCTCCA chr5.trna6-AlaCGC Sc: 47.18 >>>>>.>..>>>>.........<<<<.>>>>>..............................<<<<<................>>>>>.......<<<<<<.<<<<<. GGGGGTGTAGCTCACTTGGTA.GAGCGCGTCATTTGCActgtcgaatacagtaggac....TTGACGAG...........GtACTGAGTTCGATCCTCAGCTCCTCCA chr1.trna13-AlaTGC Sc: 53.81

Arg tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>...................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GTCCGCGTAGCACAGTGGT.A.GTGCGCTTGACTACGAtcttgtcctttgtaaaagtgactaggacgac.............ATCAAGAG...........GtCGCGATTTCGAATATCGCCGTGGATT chr10.trna7-ArgACG Sc: 65.40 GTCCGCGTAGCACAGTGGT.A.GTGCGCTTGACTACGAttcctccttctggatccga.........................ATCAAGAG...........GtCGCGATTTCGAATATCGCCGTGGATT chr7.trna1-ArgACG Sc: 64.39 GTCCGCGTAGCACAGTGGT.A.GTGCGCTTGACTACGAttacgttggcatattttgctttagcaggtgtgcttagggtctgaATCAAGAG...........GtCGCGATTTCGAATATCGCCGTGGATT chr10.trna3-ArgACG Sc: 63.92 >>>>>>>..>>>>.........<<<<.>>>>>...................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GTTCGCATGGTGCAGTGGT.A.GCATATCGCTTTCCGGtggtggtt....................................CGGCGAAG...........AtCATGGGTTCGAACCCCATTGCGAATT chr10.trna6-ArgCCG Sc: 56.40 >>>>>>>...>>>.........<<<..>>>>>...................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGGCTTGTGTTGCAGTGGT.A.GCATTCTAGACTTCGAggtcgtgaactggagttt..........................ATCTAGCG...........GtCGCGGGTTCAAATCCCGTCGAGCCTT chr9.trna8-ArgTCG Sc: 58.51 GGGCTTGTGTTGCAGTGGT.A.GCATTCTAGACTTCGAggtcgtgaactggagttt..........................ATCTAGCG...........GtCGCGGGTTCAAATCCCGTCGAGCCTT chr6.trna7-ArgTCG Sc: 58.51 GGGCTTGTGTTGCAGTGGT.A.GCATTCTAGACTTCGAggtcgtgaactggagttt..........................ATCTAGCG...........GtCGCGGGTTCAAATCCCGTCGAGCCTT chr6.trna6-ArgTCG Sc: 58.51 GGGCTTGTGTTGCAGTGGT.A.GCATTCTAGACTTCGAggtcgtgaactggagttt..........................ATCTAGCG...........GtCGCGGGTTCAAATCCCGTCGAGCCTT chr10.trna11-ArgTCG Sc: 58.51 GGGCTTGTGTTGCAGTGGT.A.GCATTCTAGACTTCGAggtcgtgaactggagttt..........................ATCTAGCG...........GtCGCGGGTTCAAATCCCGTCGAGCCTT chr10.trna1-ArgTCG Sc: 58.51 >>>>>>>..>>>...........<<<.>>>>>...................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCGGCGTGGCCAAATGGTtA.CGGCGTCCGCTTCCTAttaaatgattttaaaatcagccggt...................AGCGGGAG...........AtTGTGGGTTCGATCCCCACCGTTGGTT chr4.trna8-ArgCCT Sc: 59.67 GCCGGCGTGGCCAAATGGTtA.CGGCGTCCGCTTCCTAttaaacgattatcgaatcagccggt...................AGCGGGAG...........AtTGTGGGTTCGATCCCCACCGTTGGTT chr4.trna9-ArgCCT Sc: 57.76 GCCGGCGTGGCCAAACGGTtA.CGGCGTCCGCTTCCTAgtacaatcagttaatacctgatccgaa.................AGCGGGAG...........AtTGTGGGTTCGATCCCCACCGTTGGTT chr6.trna16-ArgCCT Sc: 55.71 >>>>>.>..>>>>.........<<<<.>>>>>...................................................<<<<<................>>>>>.......<<<<<<.<<<<<. GCCCGTGTGGCCTAATGGTtA.AGGCTTCTGACTTCTAggttacgcaagtgact............................ATCAGAGG...........AtTGTGGGTTCGAGTCCCACCTTGGGCT chr7.trna4-ArgTCT Sc: 64.22

Asn tRNAs

>>>>>>>..>>>>.........<<<<..>>>>...............................<<<<.................>>>>>.......<<<<<<<<<<<<. TGCCCCGTGGCTGAGTTGGTtACAGCGGTTGACTGTTAgttaataattaattaacactaataATCAGACG...........GtCGAGAGTTCGAGTCTCTCCGGGGCAG chr14.trna2-AsnGTT Sc: 68.44 TGCCCCGTGGCTGAGTTGGTtACAGCGGTTGACTGTTAgttaataattaattatcactaataATCAGACG...........GtCCAGAGTTCGAGTCTCTGCGGGGCAG chr4.trna5-AsnGTT Sc: 68.42 TGCCCCGTGGCTGAGTTGGTtACAGCGGTTGACTGTTAgttaataattaattatcactaataATCAGACG...........GtCGAGAGTTCGAGTCTCTCCGGGGCAG chr9.trna5-AsnGTT Sc: 68.30 TGCCCCGTGGCTGAGTTGGTtACAGCGGTTGACTGTTAgttaataaactaattta.......ATCAGACG...........GtCCAGAGTTCGAGTCTCTGCGGGGCAG chr4.trna11-AsnGTT Sc: 67.74

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>..................<<<<<...............>>>>>.......<<<<<<<<<<<<. TTCCTGTTCGTATAACGGCtA.GTATGCTCGCTTGTCActaacagtgtcCGCGGGAG...........ATCGGAGTTCGATTCTCCGACAGGAAG chr11.trna2-AspGTC Sc: 46.86

Cys tRNAs

>>>>>>>..>>>>...........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<<<<<<<<<. GTGGGAGTAGCTCAGTTttGGTtAGAGCAACCGATTGCAAttttatatttgtaatcATCGGTAG...........GtCGTGGGTTCGAATCCCACTTCCCACT chr2.trna8-CysGCA Sc: 66.91 GTGGGAGTAGCTCAGTTttGGTtAGAGCAACCGATTGCAAttttatatcgcaaat.ATCGGTAG...........GtCGTGGGTTCGAATCCCACTTCCCACT chr14.trna4-CysGCA Sc: 66.29 GTGGGAGTAGCTCAGTTttGGTtAGAGCAACCGATTGCAAttatttgtaatc....ATCGGTAG...........GtCGTGGGTTCGAATCCCACTTCCCACT chr14.trna3-CysGCA Sc: 66.26

Gln tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......................................<<<<<...............>>>>>.......<<<<<<<<<<<<. GGCTTCTTAGTATAACGGTtA.GTACATGAGATTCTGA................................TTCTCGTG...........ACCTGGGTTCGACTCCCAGAGAGGCCT chr8.trna1-GlnCTG Sc: 63.50 GGCTTCTTAGTATAACGGTtA.GTACATGAGATTCTGA................................TTCTCGTG...........ACCTGGGTTCGACTCCCAGAGAGGCCT chr7.trna3-GlnCTG Sc: 63.50 GGCTTCTTAGTATAACGGTtA.GTACATGAGATTCTGA................................TTCTCGTG...........ACCTGGGTTCGACTCCCAGAGAGGCCT chr7.trna2-GlnCTG Sc: 63.50 >>>>.>>..>>>>.........<<<<.>>>>>.......................................<<<<<...............>>>>>.......<<<<<<<.<<<<. GGCGACATCGTCTAGTGGTtA.GGACGTTCGGTTTTGAaggatagcgtggtaatccgcgtacttcaactaTCCGAACG...........ACCTGGGTTCGAACCCCAGTGACGCCT chr9.trna10-GlnTTG Sc: 56.74 GGCGATATCGTCTAGTGGTtA.GGACGTTCGGTTTTGAtttaatcatg......................TCCGAGCA...........ACCTGGGTTCGATCCCCAGTAGCGCCT chr3.trna1-GlnTTG Sc: 52.32

Glu tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.................................<<<<<...............>>>>>.......<<<<<<<<<<<<. TCTTCATTAGTATAACGGTtA.GTATAACCGCTTCTCAatgattggatttatccagttttgtt.CGCGGTAG...........ACCAGGGTTCAACTCCCTGATGGAGAA chr10.trna9-GluCTC Sc: 56.15 TCTTCAGTAGTATAACGGTtA.GTATAACCGCTTCTCAgttttcgagaactttcgatttctgttCGCGGTAG...........ACCAGGGTTCAACTCCCTGCTGGAGAA chr6.trna1-GluCTC Sc: 55.85 TCTTCAGTAGTATAACGGTtA.GTATAACCGCTTCTCAtttgaagtcgttttcttcggtgga..CGCGGTAG...........ACCAGGGTTCAACTCCCTGCTGGAGAA chr6.trna15-GluCTC Sc: 55.09 TCTTCATTAGTATAACGGTtA.GTATAACCGCTTCTCAgtaattggaattatccggttctgtt.CGCGGTAG...........ACCAGGGTTCAACTCCCTGATGGAGAA chr2.trna3-GluCTC Sc: 55.01 TCTTCATTAGTATAACGGTtA.GTATAACCGCTTCTCAgtgattggatttatccagttctgtt.CGCGGTAG...........ACCAGGGTTCAACTCCCTGATGGAGAA chr10.trna2-GluCTC Sc: 54.87 TCTTCATTAGTATAACGGTtA.GTATAACCGCTTCTCAgtatctagtttgtctagtctgtg...CGCGGTAG...........ACCAGGGTTCAACTCCCTGATGGAGAA chr10.trna10-GluCTC Sc: 54.47 TCTTCATTAGTATAACGGTtA.GTATAACCGCTTCTCAgtatctggatcttccagtcatgtt..CGCGGTAG...........ACCAGGGTTCAACTCCCTGATGGAGAA chr4.trna2-GluCTC Sc: 53.97 TCTTCATTAGTATAACGGTtA.GTATAACCGCTTCTCAgtactaatcccagtctgtg.......CGCGGTAG...........ACCAGGGTTCAACTCCCTGATGGAGAA chr1.trna10-GluCTC Sc: 53.84 TCTTCAGTAGTATAACGGTtA.GTATAACCGCTTCTCAggcctcaagtttcttggttcggtt..CGCGGTAG...........ACCAGGGTTCAACTCCCTGCTGGAGAA chr6.trna18-GluCTC Sc: 53.68 >>>>>>>..>>>>.........<<<<.>>>>>.................................<<<<<...............>>>>>.......<<<<<<<<<<<<. TCTTCGATAGTACAGGGGTtA.GTATATCCGCTTTTCAggaactcaacttccaatgtgg.....CGCGGACG...........ACCCGGGTTCGAATCCCGGTCGGAGAA chr4.trna6-GluTTC Sc: 65.16 TCTTCGATAGTACAGGGGTtA.GTATATCCGCTTTTCAggaactcaacttccaaggtgg.....CGCGGACG...........ACCCGGGTTCGAATCCCGGTCGGAGAA chr12.trna9-GluTTC Sc: 64.66 TCTTCGATAGTACAGGGGTtA.GTATATCCGCTTTTCAggaactcaacttccaacgtgg.....CGCGGACG...........ACCCGGGTTCGAATCCCGGTCGGAGAA chr11.trna5-GluTTC Sc: 64.52

Gly tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.............................................<<<<<...............>>>>>.......<<<<<<<<<<<<. ACACCGTTGGTGAAACGGT.A.TCATGCATCGTTGCCA......................................TCGATGCG...........GCAAGGGTTCGACTCCCTTACGGTGTA chr6.trna2-GlyGCC Sc: 56.25 ACACCGTTGGTGAAACGGT.A.TCATGCATCGTTGCCA......................................TCGATGCG...........GCAAGGGTTCGACTCCCTTACGGTGTA chr14.trna6-GlyGCC Sc: 56.25 ACACCGTTGGTGAAACGGT.A.TCATGCATCGTTGCCA......................................TCGATGCG...........GCAAGGGTTCGACTCCCTTACGGTGTA chr14.trna1-GlyGCC Sc: 56.25 ACACCGTTGGTGAAACGGT.A.TCATGCATCGTTGCCA......................................TCGATGCG...........GCAAGGGTTCGACTCCCTTACGGTGTA chr1.trna14-GlyGCC Sc: 56.25 ACACCGTTGGTGAAACGGT.A.TCATGCATCGTTGCCAtttcagttattaataaacgggatgaaga..........TCGATGCG...........GCAAGGGTTCGACTCCCTTACGGTGTA chr4.trna10-GlyGCC Sc: 50.33 ACACCGTTGGTGAAACGGT.A.TCATGCATCGTTGCCAttaggtgaatt...........................TCGATGCG...........GCAAGGGTTCGACTCCCTTACGGTGTA chr3.trna2-GlyGCC Sc: 49.80 ACACCGTTGGTGAAACGGT.A.TCATGCATCGTTGCCAttaggtgattt...........................TCGATGCG...........GCAAGGGTTCGACTCCCTTACGGTGTA chr6.trna10-GlyGCC Sc: 49.66 ACACCGTTGGTGAAACGGT.A.TCATGCATCGTTGCCAtttggtgattt...........................TCGATGCG...........GCAAGGGTTCGACTCCCTTACGGTGTA chr6.trna11-GlyGCC Sc: 49.51 ACACCGTTGGTGAAACGGT.A.TCATGCATCGTTGCCAtttggctactt...........................TCGATGCG...........GCAAGGGTTCGACTCCCTTACGGTGTA chr9.trna13-GlyGCC Sc: 48.74 >>>>>>>..>>>>.........<<<<.>>>>>.............................................<<<<<...............>>>>>.......<<<<<<<<<<<<. ACGCTGTTGGTGTATTGGT.A.ACATTAGAGCTTCCCAtttatgagtttaatggccgccctttagtgtcggataatTGCTCTAG...........CACGGGGTTCGATTCCCCGACAGCGTA chr11.trna4-GlyCCC Sc: 43.41 ACGCTGTTGGTGTATTGGT.A.ACATTAGAGCTTCCCAttagcttcaatggccgtcttcaggcggataat......TGCTCTAG...........CACGGGGTTCGATTCCCCGACAGCGTA chr10.trna8-GlyCCC Sc: 42.37 >>>>>>>..>>>>.........<<<<.>>>>>.............................................<<<<<...............>>>>>.......<<<<<<<<<<<<. GCGCTAATCGTCTAGTGGTtA.GGATGGCTCCCTTCCA......................................AGGAGTCG...........ACCGGCGTTCGAATCGCCGTTGGCGCA chr6.trna9-GlyTCC Sc: 63.13 GCGCTAATCGTCTAGTGGTtA.GGATGGCTCCCTTCCA......................................AGGAGTCG...........ACCGGCGTTCGAATCGCCGTTGGCGCA chr1.trna7-GlyTCC Sc: 63.13 GCGCTAATCGTCTAGTGGTtA.GGATGGCTCCCTTCCAtaagttca..............................AGGAGTCG...........ACCGGCGTTCGAATCGCCGTTGGCGCA chr9.trna7-GlyTCC Sc: 56.66

His tRNAs

>>>>>>>..>>>.............<<<.>>>>>....................<<<<<...............>>>>>.......<<<<<<<<<<<<. GTCCCTATAGTCTAGT..GGTtA.TGACGTCACATTGTGG.............CTGTGGAG...........GCGCCTGTTCGATTCAGGCTAGGGACA chr7.trna12-HisGTG Sc: 74.67 GTCCCTATAGTCTAGT..GGTtA.TGACGTAACATTGTGG.............CTGTTGAG...........GCGCCTGTTCGATTCAGGCTAGGGACA chr2.trna7-HisGTG Sc: 73.65 GTCCCTATAGTCTAGT..GGTtA.TGACGTAACATTGTGGagtggataat...CTGTTGAG...........GCGCCTGTTCGATTCAGGCTAGGGACA chr10.trna4-HisGTG Sc: 67.21 >>>>>>>..>>>>...........<<<<.>>>>>....................<<<<<...............>>>>>.......<<<<<<<<<<<<. GTCTCTATCGTCTAGTTcGGTtA.GGACGCTACGTTGTGGttatacctcagcgCCGTGGAA...........ACGGTTGTTCGAATCAGCCTAGGGACA chr7.trna13-HisGTG Sc: 45.23

Ile tRNAs

>>>>>>>..>>>>...........<<<<.>>>>>........................<<<<<................>>>>>.......<<<<<<<<<<<<. GGTCGATTATATCAGTTGGTttA.GATAGTGGAGCTAATAattaaaaatttatt...ACTCCAAG...........GtCGGCGGTTCGATCCCGTCATCGATCA chr9.trna14-IleAAT Sc: 58.12 GGTCGATTATATCAGTTGGTttA.GATAGTGGAGCTAATAattaaaaagttatt...ACTCCAAG...........GtCGGCGGTTCGATCCCGTCATCGATCA chr9.trna1-IleAAT Sc: 57.62 GGTCGATTATATCAGTTGGTttA.GATAGTGGAGCTAATAataaaaatgagttatt.ACTCCAAG...........GtCGGCGGTTCGATCCCGTCATCGATCA chr12.trna2-IleAAT Sc: 57.52 GGTCGATTATATCAGTTGGTttA.GATAGTGGAGCTAATAataaataacgttatt..ACTCCAAG...........GtCGGCGGTTCGATCCCGTCATCGATCA chr9.trna2-IleAAT Sc: 57.12 GGTCGATTATATCAGTTGGTttA.GATAGTGGAGCTAATAatcattaagttatt...ACTCCAAG...........GtCGGCGGTTCGATCCCGTCATCGATCA chr9.trna15-IleAAT Sc: 56.70 GGTCGATTATATCAGTTGGTttA.GATAGTGGAGCTAATAatcattaagttatt...ACTCCAAG...........GtCGGCGGTTCGATCCCGTCATCGATCA chr9.trna12-IleAAT Sc: 56.70 >>>>>>>..>>>>...........<<<<.>>>>>........................<<<<<................>>>>>.......<<<<<<<<<<<<. TTCCCGTTAACTCAGT.GGTc.A.GAGTAGTGTGCTTATGaggatacagttttatttTCACACCG...........GtCGTGGGTTCAACTCCCACACGGGAAA chr1.trna9-IleTAT Sc: 56.60

Leu tRNAs

>>>>>>>..>>>............<<<.>>>>>.....................................<<<<<.>>>..............<<<..>>>>>.......<<<<<.<<<<<<<. GGCGAGATGTGTGAGTGGTctA.AACAGCTGTCTTAAGGtaatcttagtattacgtaagcat.......CGGCAGTCCTC............CGGGGCGTGGGTTCGAATCCCAC.TCTCGTCA chr9.trna9-LeuAAG Sc: 52.91 >>>>>>>..>>>............<<<.>>>>>.....................................<<<<<.>>.>............<.<<..>>>>>.......<<<<<.<<<<<<<. GGCGAGATGTGTGAGTGGTctA.AACAGCTGTCTTAAGGtaatcgttgtattacgtaagcac.......CGGCAGTCCGT............AAGGGCGTGGGTTCGAATCCCAC.TCTCGTCA chr11.trna1-LeuAAG Sc: 51.63 >>>>>>>..>>>............<<<.>>>>>.....................................<<<<<.>>>..............<<<..>>>>>.......<<<<<.<<<<<<<. GGCGAGATGTGTGAGTGGTctA.AACAGCTGTCTTAAGGtgttgtacaacactgaaagcc.........CGGCAGTCCTC............CGGGGCGTGGGTTCGAATCCCAC.TCTCGTCA chr1.trna16-LeuAAG Sc: 50.74 GGCGAGATGTGTGAGTGGTctA.AACAGCTGTCTTAAGGtgttgttcaacactgaaagcc.........CGGCAGTCCTC............CGGGGCGTGGGTTCGAATCCCAC.TCTCGTCA chr6.trna17-LeuAAG Sc: 50.60 GGCGAGATGTGTGAGTGGTctA.AACAGCTGTCTTAAGGtgttgttcaacactgaaagcc.........CGGCAGTCCTC............CGGGGCGTGGGTTCGAATCCCAC.TCTCGTCA chr1.trna8-LeuAAG Sc: 50.60 GGCGAGATGTGTGAGTGGTctA.AACAGCTGTCTTAAGGtgttgttcaacactgaaagcc.........CGGCAGTCCTC............CGGGGCGTGGGTTCGAATCCCAC.TCTCGTCA chr1.trna15-LeuAAG Sc: 50.60 >>>>>>>..>>>>..........<<<<.>>>>>.....................................<<<<<.>>................<<..>>>>>.......<<<<<.<<<<<<<. GGCGAAGTGTCCGAGTGGTt.A.TGGAGTGTCGTTCAGGtgtgaaacg.....................CCGGCATGC....TTT.........GCGCGTGGGTTCGAATCCCAC.CTTCGTCA chr3.trna3-LeuCAG Sc: 52.61 >>>>>>>..>>>............<<<.>>>>.......................................<<<<.>>.>............<.<<..>>>>>.......<<<<<.<<<<<<<. GGACAGATGCCCGAGCGGTt.A.AGGGGACGGTCTCAAGtggaaaacactttccctaattagggttgaaATCCGTTGCGT............AAGCGCGTGAGTTCGAATCTCAC.TCTGTTCA chr9.trna4-LeuCAA Sc: 56.73 GGACAGATGCCCGAGCGGTt.A.AGGGGACGGTCTCAAGtggaatacactttccctgataagggttgaaATCCGTTGCGT............AAGCGCGTGAGTTCGAATCTCAC.TCTGTTCA chr8.trna3-LeuCAA Sc: 56.09 GGACAGATGCCCGAGCGGTt.A.AGGGGACGGTCTCAAGtggaatacactttccctgataagggttgaaATCCGTTGCGT............AAGCGCGTGAGTTCGAATCTCAC.TCTGTTCA chr7.trna11-LeuCAA Sc: 56.09 >>>>>>>..>>>............<<<.>>>>.......................................<<<<.>>>>............<<<<..>>>>>.......<<<<<.<<<<<<<. GCGGTGTTGACCGAGTGGTt.A.AGGTGTCGGCCTTAAGctagctcttttgtg................ATCCGATGGTCGA........GAGACCGCGTGAGTTCGAACCTCAC.ACACCGCA chr2.trna2-LeuTAA Sc: 54.54

Lys tRNAs

>>>.>>>..>>>>.........<<<<.>>>>>.....................................................<<<<<................>>>>>.......<<<<<<<<.<<<. GCCCCCGTGGCGCAATCGGT.AGCGCGCACGACTCTTAacgagtctatttgagccgattatgggccatcaatcatttcttcgtcATCGTGCG...........GtTGCGGGTTCGAGCCCCGCCGGAGGCT chr13.trna2-LysCTT Sc: 68.14 GCCCCCGTGGCGCAATCGGT.AGCGCGCACGACTCTTAgagtctgcttgaactggttacgggccatcatctca...........ATCGTGCG...........GtTGCGGGTTCGAGCCCCGCCGGAGGCT chr5.trna1-LysCTT Sc: 67.58 GCCCCCGTGGCGCAATCGGT.AGCGCGCACGACTCTTAgagtctgcttgaaccggttacgggccatcatctca...........ATCGTGCG...........GtTGCGGGTTCGAGCCCCGCCGGAGGCT chr8.trna5-LysCTT Sc: 66.95 GCCCCCGTGGCGCAATCGGT.AGCGCGCACGACTCTTAgagtctgcttgaaccggttacgggccatcatctca...........ATCGTGCG...........GtTGCGGGTTCGAGCCCCGCCGGAGGCT chr6.trna8-LysCTT Sc: 66.95 GCCCCCGTGGCGCAATCGGT.AGCGCGCACGACTCTTAgagtctgcttgaaccggttacgggccatcatctca...........ATCGTGCG...........GtTGCGGGTTCGAGCCCCGCCGGAGGCT chr4.trna3-LysCTT Sc: 66.95 GCCCCCGTGGCGCAATCGGT.AGCGCGCACGACTCTTAgagtctgcttgaaccggttacgggccatcatctca...........ATCGTGCG...........GtTGCGGGTTCGAGCCCCGCCGGAGGCT chr14.trna5-LysCTT Sc: 66.95 GCCCCCGTGGCGCAATCGGT.AGCGCGCACGACTCTTAgagtctgcttgaaccggttacgggccatcatctca...........ATCGTGCG...........GtTGCGGGTTCGAGCCCCGCCGGAGGCT chr12.trna8-LysCTT Sc: 66.95 >>>>>>>..>>>>.........<<<<.>>>>>.....................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCTTCGTAGCTGAGTTGGTtACAGCGTCCGACTTTTAagctttcacaagcttat.............................ATCGGGCG...........AtCACGGGTTCGAGCCCCGTCGAAGGCT chr6.trna4-LysTTT Sc: 70.24

Met tRNAs

>>>>>>>..>>>>........<<<<..>>>....................................<<<.................>>>>>.......<<<<<<<<<<<<. GCCCTCATGGTGTAGTGGTA.ACACGAAGGTCTCATAtgaagttagcttaatggttgacatctaATCCTCAG...........C.TCTGAGTTCGATTCTCAGTGAGGGCA chr6.trna3-MetCAT Sc: 58.37 >>>>>>>..>>>>........<<<<.>>>>>..................................<<<<<................>>>>>.......<<<<<<<<<<<<. AACAGCGTAATTCAGAGGAA.GAATGCAAGGCTCATAattatttggt.................ACCTTGAA...........GtCGCTGGATCGAAACCAGCCGCTGTTA chr3.trna4-MetCAT Sc: 56.04 AACAGCGTAATTCAGAGGAA.GAATGCAAGGCTCATAtttatttgggt................ACCTTGAA...........GtCGCTGGATCGAAACCAGCCGCTGTTA chr9.trna6-MetCAT Sc: 55.53 >>>>>>>..>>>>........<<<<..>>>....................................<<<.................>>>>>.......<<<<<<<<<<<<. GCCCTCATGGTGTAGTGGTA.ACACGAAGGTCTCATAtgaatttggctcttcggtcagctcgtaATCCTCAG...........C.TCTGAGTTCGATTCTCAGTGAGGGCA chr5.trna7-MetCAT Sc: 55.40 GCCCTCATGGTGTAGTGGTA.ACACGAAGGTCTCATAcgacgttgactttcgcggttaacggcaATCCTCAG...........C.TCTGAGTTCGATTCTCAGTGAGGGCA chr6.trna14-MetCAT Sc: 54.41 >>>>>>>..>>>>........<<<<.>>>>>..................................<<<<<................>>>>>.......<<<<<<<<<<<<. AACAGCGTAATTCAGAGGAA.GAATGCAAGGCTCATActaacttgggt................ACCTTGAA...........GtCGCTGGATCGAAACCAGCCGCTGTTA chr10.trna5-MetCAT Sc: 54.40

Phe tRNAs

>>>>.>>..>>>>........<<<<.>>>>>..........................<<<<<................>>>>>.......<<<<<<<.<<<<. GGCGACATAGCTCAGTTGGGAGAGCGCACGACTGAAGttcaaataaagaatcaa..ATCGTGCG...........GtCCCTGGTTCGATCCCGGGTGGCGCCA chr5.trna5-PheGAA Sc: 71.37 GGCGGCATAGCTCAGTTGGGAGAGCGCACGACTGAAGttcatcgagaatcaa....ATCGTGCG...........GtCCCTGGTTCGATCCCGGGTGGCGCCA chr12.trna1-PheGAA Sc: 71.00 GGCGACATAGCTCAGTTGGGAGAGCGCACGACTGAAGttcatcaagaatcaa....ATCGTGCG...........GtCCCTGGTTCGATCCCGGGTGGCGCCA chr4.trna14-PheGAA Sc: 70.06 GGCGACATAGCTCAGTTGGGAGAGCGCACGACTGAAGttcatcaagaatcaa....ATCGTGCG...........GtCCCTGGTTCGATCCCGGGTGGCGCCA chr4.trna13-PheGAA Sc: 70.06 GGCGACATAGCTCAGTTGGGAGAGCGCACGACTGAAGttccgaaactcgagattcaATCGTGCG...........GtCCCTGGTTCGATCCCGGGTGGCGCCA chr5.trna4-PheGAA Sc: 68.16

Pro tRNAs

>>>>>>>..>>>>........<<<<.>>>>>...........................................<<<<<................>>>>>.......<<<<<<<<<<<<. GTTTCGTTGGTGCAGTGGTA.GCATGCCCTCTTAGGGttggattacgtaaagttttccggctt..........TGGGGGTG...........GtCCTCGGTTCAATCCCGGGACGAGACC chr7.trna9-ProAGG Sc: 53.94 GTTTCGTTGGTGCAGTGGTA.GCATGCCCTCTTAGGGttggattacgtaaagttttccggctt..........TGGGGGTG...........GtCCTCGGTTCAATCCCGGGACGAGACC chr7.trna8-ProAGG Sc: 53.94 GTTTCGTTGGTGCAGTGGTA.GCATGCCCTCTTAGGGttggattgcgtaaagttttccggctt..........TGGGGGTG...........GtCCTCGGTTCAATCCCGGGACGAGACC chr7.trna7-ProAGG Sc: 53.30 GTTTCGTTGGTGCAGTGGTA.GCATGCCCTCTTAGGGttggattgcgtaaagttttccggctt..........TGGGGGTG...........GtCCTCGGTTCAATCCCGGGACGAGACC chr7.trna10-ProAGG Sc: 53.30 GTTTCGTTGGTGCAGTGGTA.GCATGCCCTCTTAGGGttggattgcgtaaaagctttccggctt.........TGGGGGTG...........GtCCTCGGTTCAATCCCGGGACGAGACC chr7.trna6-ProAGG Sc: 52.94 >>>>>>>..>>>>........<<<<.>>>>>...........................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGCCTAATAGTGTAATCGTC.GCACGCATCCTTCGGGatcgttattcttcccgcaacttgaggttgcatagttTGGATGTA...........G.TCTGGGTTCAATTCCCAGTTGGGCCC chr2.trna6-ProCGG Sc: 37.30 >>>>>.>..>>>..........<<<.>>>>>...........................................<<<<<................>>>>>.......<<<<<<.<<<<<. GGGTTTGTAGTGTAGTGGTA.TCGCGCTTCATTTGGGcttcaaggagcaccg.....................TTGAAGAG...........GtCCCGCGTTCGATCCGCGGCTGACCCC chr5.trna3-ProTGG Sc: 53.52

SeC tRNAs

Ser tRNAs

>>>>>>>...>>>.............<<<.>>>>>....................................<<<<<..>>>............<<<...>>>>>.......<<<<<.<<<<<<<. GGAGTAGTG.CGACAGT..GGTtA.CTCGGTTCGATTAGAAtttagaaattcctc...............ATCGAAT.GCCG.TC.......AGGCG.CGCAGGTTCGAGTCCTGC.CTGCTCCT chr8.trna4-SerAGA Sc: 51.94 GGAGTAGTG.CGACAGT..GGTtA.CTCGGTTCGATTAGAAttttgaaattcctc...............ATCGAAT.GCCG.TC.......AGGCG.CGCAGGTTCGAGTCCTGC.CTGCTCCT chr7.trna5-SerAGA Sc: 51.80 GGAGTAGTG.CGACAGT..GGTtA.CTCGGTTCGATTAGAAttttgaaattcctc...............ATCGAAT.GCCG.TC.......AGGCG.CGCAGGTTCGAGTCCTGC.CTGCTCCT chr1.trna3-SerAGA Sc: 51.80 GGAGTAGTG.CGACAGT..GGTtA.CTCGGTTCGATTAGAAttttgaaattcctc...............ATCGAAT.GCCG.TC.......AGGCG.CGCAGGTTCGAGTCCTGC.CTGCTCCT chr1.trna2-SerAGA Sc: 51.80 GGAGTAGTG.CGACAGT..GGTtA.CTCGGTTCGATTAGAAttttgaaattcctc...............ATCGAAT.GCCG.TC.......AGGCG.CGCAGGTTCGAGTCCTGC.CTGCTCCT chr1.trna19-SerAGA Sc: 51.80 GGAGTAGTG.CGACAGT..GGTtA.CTCGGTTCGATTAGAAttttgaaattcctc...............ATCGAAT.GCCG.TC.......AGGCG.CGCAGGTTCGAGTCCTGC.CTGCTCCT chr1.trna18-SerAGA Sc: 51.80 >>>>>>>...>>>.............<<<.>>>>>....................................<<<<<..>>>............<<<...>>>>>.......<<<<<.<<<<<<<. GGCGAGGTC.GGATAGCCcGGTtA.TTCCGGAACATTCGAAttaataatacgag................ATGTTCT.GCCGC........AAGGCG.CGTGCGTTCGAATCGCAC.CCTCGTCG chr1.trna17-SerCGA Sc: 39.93 Pseudo ..>>>>>...>>>.............<<<.>>>>>....................................<<<<<..>>>............<<<...>>>>>.......<<<<<.<<<<<... ..CTTGATGcTCCGAGT..GGTtA.AGGGGCGGGACTTGAAtggatcacgtaatccaagaa.........ATCCCGT.GTCGA........AAGACG.CGCAGGTTCGAACCCTGC.TCAAGTCG chr2.trna1-SerTGA Sc: 42.93 >>>>>>>...>>>.............<<<.>>>>>....................................<<<<<..>>>............<<<...>>>>>.......<<<<<.<<<<<<<. AGAGCGATC.GGATAGT..GGTtA.TTCCGCCACATTGCTAttgttcttgctcttttacgtaagcgatttATGTGGTGCCTT..........CGGGCtCGGGAGTTCGAATCTCCC.TCGTTCTG chr2.trna5-SerGCT Sc: 49.95 Pseudo >>>>>>>...>>>.............<<<.>>>>>....................................<<<<<..>>>>..........<<<<...>>>>>.......<<<<<.<<<<<<<. GATACAGTC.GGATAGT..GGTtA.TTCCGTCACATTGCTAtggttgcttaggtaatcagattatg....ATGTGGT.GCCT.TC.......GGGCG.CGTGAGTTCGAATCTCAC.CTGTGTCA chr7.trna14-SerGCT Sc: 49.41

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>............<<<.>>>>>................................<<<<<....................>>>>>.......<<<<<<<<<<<<. GCCTCTATAGTTTAGTTGGCtA.TAACACCCCACTAGTAataagttgtatacaacaagccta..ATGGGGAG...............GtCTGTCGTTCGAATCGGCATGGAGGCA chr6.trna13-ThrAGT Sc: 64.83 GCCTCTATAGTTTAGTTGGCtA.TAACACCCCACTAGTAacttgtttagacattgtcta.....ATGGGGAG...............GtCTGTCGTTCGAATCGGCATGGAGGCA chr7.trna15-ThrAGT Sc: 64.37 GCCTCTATAGTTTAGTTGGCtA.TAACACCCCACTAGTAgaaattagcgatcgctttcatta..ATGGGGAG...............GtCTGTCGTTCGAATCGGCATGGAGGCA chr9.trna11-ThrAGT Sc: 63.91 GCCTCTATAGTTTAGTTGGCtA.TAACACCCCACTAGTAattaccagatctttttcgcggactaATGGGGAG...............GtCTGTCGTTCGAATCGGCATGGAGGCA chr6.trna5-ThrAGT Sc: 62.75 GCCTCTATAGTTTAGTTGGCtA.TAACACCCCACTAGTAgaaatgagcgatcgctctcacta..ATGGGGAG...............GtCTGTCGTTCGAATCGGCATGGAGGCA chr9.trna3-ThrAGT Sc: 62.14 >>>>>.>..>>>>..........<<<<.>>>>>................................<<<<<....................>>>>>.......<<<<<<.<<<<<. GCCCTTGTAGCTCAGG.GGTtA.GAGTATGGCCTTCGTAgttaatacg................AGGTCAGGTTAGg..........GtCCATGGTTCAAATCCATGCTGGGGCA chr2.trna4-ThrCGT Sc: 54.05 >>>.>>>..>>>............<<<.>>>>>................................<<<<<....................>>>>>.......<<<<<<<<.<<<. GCCTCGGTAGTTTAGT.GGTtA.TAATTTTTCACTTGTAgtgtttctacatg............ATGAAAGG...............GtCCTGTGTTCGACTCACAGCCGTGGCA chr1.trna1-ThrTGT Sc: 66.12

Trp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<. GGAGCTGTAGTTCAATTGGTA.GAATAACGGATTCCAActacttctggttgatATCCGTCG...........GtCGCAGGTTCGATTCCTGTCAGCTTCA chr5.trna8-TrpCCA Sc: 65.57 >>>>>>>..>>>>.........<<<<..>>>>......................<<<<.................>>>>>.......<<<<<<<<<<<<. GGAGTCGTAGTTCAGT.GGTA.GAATATCGGATTCCAAtaattggaagc....ATCCGCCG...........GtCGCAGGTTCAATCCCTGTCGACTTCA chr4.trna7-TrpCCA Sc: 63.08 GGAGTCGTAGTTCAGT.GGTA.GAATATCGGATTCCAAttactggaagc....ATCCGCCG...........GtCGCAGGTTCAATCCCTGTCGACTTCA chr12.trna7-TrpCCA Sc: 62.30

Tyr tRNAs

>>>>>>>..>>>>...........<<<<.>>>>>........................<<<<<................>>>>>.......<<<<<<<<<<<<. CTCTCCGTAGTTTAGTgTGGTttAGAGCGTCAGACTGTAAttggttacaatatcac.ATCTGAAA...........GtCGTGCGTTCGACTCGCACCGGGGAGA chr4.trna12-TyrGTA Sc: 57.34 CTCTCCGTAGTTTAGTgTGGTttAGAGCGTCAGACTGTAAttggtttccaaaatcacATCTGAAA...........GtCGTGCGTTCGACTCGCACCGGGGAGA chr13.trna1-TyrGTA Sc: 56.83 CTCTCCGTAGTTTAGTgTGGTttAGAGCGTCAGACTGTAAttggttaacaatctcacATCTGAAA...........GtCGTGCGTTCGACTCGCACCGGGGAGA chr11.trna6-TyrGTA Sc: 56.83 CTCTCCGTAGTTTAGTgTGGTttAGAGCGTCAGACTGTAAttggttaacaacttcacATCTGAAA...........GtCGTGCGTTCGACTCGCACCGGGGAGA chr4.trna4-TyrGTA Sc: 56.83

Val tRNAs

>>>>.>>..>>>>.........<<<<.>>>>>......................................<<<<<................>>>>>.......<<<<<<<.<<<<. GGTCACGTGATGGAGTTGGTcACCATACCTGTCTAACAttctttggaaatgtctt..............CACAGGAG...........GtCGGCGGTTCGATCCCGCCCGGGATCA chr12.trna5-ValAAC Sc: 55.88 GGTCACGTGATGGAGTTGGTcACCATACCTGTCTAACAttcctttaatgtctt................CACAGGAG...........GtCGGCGGTTCGATCCCGCCCGGGATCA chr12.trna4-ValAAC Sc: 55.85 GGTCACGTGATGGAGTTGGTcACCATACCTGTCTAACAttcatcgaatgtctt................CACAGGAG...........GtCGGCGGTTCGATCCCGCCCGGGATCA chr1.trna12-ValAAC Sc: 55.49 GGTCACGTGATGGAGTTGGTcACCATACCTGTCTAACAttcctttgaatgtctt...............CACAGGAG...........GtCGGCGGTTCGATCCCGCCCGGGATCA chr12.trna6-ValAAC Sc: 55.48 GGTCACGTGATGGAGTTGGTcACCATACCTGTCTAACAttccttgaatgtctt................CACAGGAG...........GtCGGCGGTTCGATCCCGCCCGGGATCA chr12.trna10-ValAAC Sc: 55.35 GGTCACGTGATGGAGTTGGTcACCATACCTGTCTAACAttcaacggaatgtctt...............CACAGGAG...........GtCGGCGGTTCGATCCCGCCCGGGATCA chr8.trna2-ValAAC Sc: 55.26 GGTCACGTGATGGAGTTGGTcACCATACCTGTCTAACAttcacctgaatgtctt...............CACAGGAG...........GtCGGCGGTTCGATCCCGCCCGGGATCA chr12.trna3-ValAAC Sc: 54.98 >>>>>>>..>>>>.........<<<<.>>>>>......................................<<<<<................>>>>>.......<<<<<<<<<<<<. ATCTCATTGGCTCAGTTGGTtAGAGTGTTCGCTTCACAtgattacggattttaactcgtggctgctgaaCGCGAAAG...........GtCCCCGGTTCGATCCCGGGATGGGATA chr4.trna1-ValCAC Sc: 73.79 ATCTCATTGGCTCAGTTGGTtAGAGTGTTCGCTTCACAttaaaagacaggtcacccgatctggtgat..CGCGAAAG...........GtCCCCGGTTCGATCCCGGGATGGGATA chr1.trna11-ValCAC Sc: 73.69

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.