tRNAscan-SE Analysis of the Coxiella burnetii Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna41 (93392-93320)	Length: 73 bp
Type: Ala	Anticodon: GGC at 34-36 (93359-93357)	Score: 78.21
Seq: GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (167305-167380)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (167338-167340)	Score: 95.96
Seq: GGGGCCATAGCTCAGTTGGGAGAGCATCTGCCTTGCAAGCAGAGGGtCGGCGGTTCGACTCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (980120-980196)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (980154-980156)	Score: 90.18
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGTACCTGGCTACGAACCAGGCGGtCGGCGGTTCGAATCCGTCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1043037-1043113)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (1043071-1043073)	Score: 86.15
Seq: GCCCCGGTGGCACAGTTGGAtAGCGCAGTCCCCTCCTAAGGGACAGGtCACAGGTTCAAATCCTGTCCGGGGCACCA
Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (1110680-1110756)	Length: 77 bp
Type: Arg	Anticodon: TCG at 35-37 (1110714-1110716)	Score: 92.25
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGTAACCGGCTTCGAACCGGTTGGtCGGGGGTTCGAATCCCTCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (611964-612037)	Length: 74 bp
Type: Arg	Anticodon: TCT at 35-37 (611998-612000)	Score: 77.32
Seq: GCGCCCGTAGCTCACTCGGAtAGAGCATCGGCCTTCTAAGCCGAGGGtAGCAGGTTCGAATCCTGCCGGGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna38 (458664-458589)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (458631-458629)	Score: 87.89
Seq: TCCTCGGTAGCTCAGTCGGTAGAGCAGGTGACTGTTAATCACTTGGtCGGGGGTTCAAGTCCCTCCCGAGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (1418081-1418005)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1418047-1418045)	Score: 94.55
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCACTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna19 (959650-959720)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (959682-959684)	Score: 55.97
Seq: GGCTGGGTGGCAGAGTGGTCATGCAGCGGCCTGCAAAGCCGCGTACGCCGGTTCGATTCCGGCCTCAGCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (1758961-1759035)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (1758993-1758995)	Score: 76.09
Seq: TGGGGTGTCGCCAAGCGGTAAGGCACTGGGTTTTGATCCCAGCATtCCCAGGTTCGAATCCTGGCACCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna40 (255593-255518)	Length: 76 bp
Type: Glu	Anticodon: CTC at 35-37 (255559-255557)	Score: 59.20
Seq: GCTCCCTTCGTCTAGAGGCctAGGACACCGCCCTCTCACAGCGGTAACACGGGTTCGAATCCCGTAGGGAGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (93275-93200)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (93241-93239)	Score: 57.75
Seq: GTCCCCATCGTCTAGAGGCctAGGACATCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna16 (888985-889055)	Length: 71 bp
Type: Gly	Anticodon: CCC at 33-35 (889017-889019)	Score: 72.07
Seq: GCGGGTGTAGTTCAATGGTAGAACATAAGCTTCCCAAGCTTAGAACGTGGGTTCGATTCCCATCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna35 (976240-976165)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (976207-976205)	Score: 94.21
Seq: GCGGGAATAGCTCAGCTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna6 (206092-206165)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (206124-206126)	Score: 71.80
Seq: GCGGGTGTAGTTCAACGGTAGAACTTCAGCCTTCCAAGCTGATAGCGTGGGTTCGACTCCCATCACCCGCTCCG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (612142-612217)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (612175-612177)	Score: 81.83
Seq: GTGGGCGTAGCTCAGTTGGTAGAGCCCCGGATTGTGATTCCGGTTGtCGTGGGTTCAAGTCCCATCGTCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna2 (167224-167300)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (167258-167260)	Score: 98.22
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCACACCCCTGATAAGGGTGAGGtCGGAAGTTCAAATCTTCCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna36 (744663-744577)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (744629-744627)	Score: 83.04
Seq: GCCGAGGTGGCGGAATTGGTaGACGCGCCGGACTCAAAATCCGGTGGTGGCAACACCGTGAGGGTTCGAGTCCCTCCCTCGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna18 (940995-941078)	Length: 84 bp
Type: Leu	Anticodon: CAG at 35-37 (941029-941031)	Score: 64.30
Seq: GCCGAGGTGGTGGAATTGGTaGACACGCAAGTTTCAGGTACTTGTGGGGGAAACCCCGTGGAGGTTCAAGTCCTCTCCTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna29 (1401806-1401725)	Length: 82 bp
Type: Leu	Anticodon: GAG at 35-37 (1401772-1401770)	Score: 57.22
Seq: GCCGAAGTGGTGGAACTGGTaGACACGCTGTCTTGAGGGGGCAGTGGGGAAACCCGTGCCGGTTCGAGTCCGGCCTTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna20 (959764-959851)	Length: 88 bp
Type: Leu	Anticodon: TAA at 35-37 (959798-959800)	Score: 79.61
Seq: GCCCGGGTGGCGGAATTGGTaGACGCAAGGGACTTAAAATCCCTCGGGTGAATaACCCGTGCCGGTTCGAGTCCGGCCCCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna14 (679134-679218)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (679168-679170)	Score: 72.28
Seq: GCGAGAGTGGCGGAATTGGTaGACGCGCTGGATTTAGGTTCCAGTAGGTTAGCCTGTGAGAGTTCGAGTCTCTCCTCTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna13 (654377-654452)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (654410-654412)	Score: 86.94
Seq: GGGCCGTTAGCTCAGTCGGTAGAGCAGCTGACTCTTAATCAGCGGGtCCACGGTTCGAGCCCGTGACGGCCCATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna9 (368912-368987)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (368945-368947)	Score: 96.37
Seq: GGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTGGtCATAGGTTCAAATCCTATACGACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (1386805-1386729)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1386771-1386769)	Score: 83.01
Seq: TGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTACCCCCGCTACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna25 (1772658-1772731)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (1772692-1772694)	Score: 85.33
Seq: GGCTATGTAGCTCAGTTGGTtAGAGCACGGCATTCATAATGCCGGTGtCGGTGGTTCAAGTCCACCCATAGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (1546000-1545924)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1545966-1545964)	Score: 93.98
Seq: GGGCCCATAGCTCAGTTGGTtAGAGCGATCGACTCATAATCGACAGGtCCCAGGTTCAAGTCCTGGTGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna17 (892873-892948)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (892906-892908)	Score: 90.90
Seq: GGCCAGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCGGCAGTTCGATTCTGCCTCTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna39 (342959-342886)	Length: 74 bp
Type: Pro	Anticodon: CGG at 35-37 (342925-342923)	Score: 78.83
Seq: CGGGGTGTAGCTCAGCCtGGTAGAGCACTGCCTTCGGGAGGCAGGGGcCGGAGGTTCGAATCCTCTCACCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (1266991-1266915)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (1266957-1266955)	Score: 74.50
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGGGtCGCAGGTTCAAATCCTGCCGTCCCGATCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna10 (610363-610436)	Length: 74 bp
Type: Pro	Anticodon: TGG at 35-37 (610397-610399)	Score: 82.48
Seq: CGGGGTATAGCGCAGTCtGGTAGCGCGCCTGCTTTGGGAGCAGGATGtCGGGGGTTCAAATCCCTCTACCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna32 (1163203-1163113)	Length: 91 bp
Type: Ser	Anticodon: CGA at 36-38 (1163168-1163166)	Score: 59.79
Seq: GGAGAGGTACCGAAGCGGTcacACCGGCACCGACTCGAAATCGGCTGAGGCCTCACGGCCTACGCGGGTTCGAATCCCGCCCTCTCCGCCA
Str: >>>>>>>..>>>............<<<..>>>>.......<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna34 (992908-992817)	Length: 92 bp
Type: Ser	Anticodon: GCT at 35-37 (992874-992872)	Score: 74.27
Seq: GGAGAGATGGCCGAGAGGCtgAAGGCGCTCCCCTGCTAAGGGAGTATGGGGCGAAAGCTCCATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>....<<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna37 (604754-604664)	Length: 91 bp
Type: Ser	Anticodon: GGA at 35-37 (604720-604718)	Score: 71.45
Seq: GGAGAGGTGCTCGAGTGGTtgAAGAGGCACGACTGGAAATCGTGTGTGCGTTAAtCACGTACCGAGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>.......<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna33 (1128301-1128212)	Length: 90 bp
Type: Ser	Anticodon: TGA at 35-37 (1128267-1128265)	Score: 75.34
Seq: GGAGAGGTGGCAGAGCGGTtgAATGCGACGGTCTTGAAAACCGTTGAGGGGGCAACTCCTCCGAGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna1 (142604-142679)	Length: 76 bp
Type: Thr	Anticodon: CGT at 34-36 (142637-142639)	Score: 85.91
Seq: GCCGGTGTAGCTCAGGTGGTAGAGCAACTGATTCGTAATCAGTAGGtCCGCAGTTCGAGTCTGCGCACCGGCATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (206165-206240)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (206198-206200)	Score: 90.17
Seq: GCCCACATAGCTCAGGCGGTAGAGCACTTCCTTGGTAAGGAAGAGGtCACCGGTTCAAGTCCGGTTGTGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (192923-192998)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (192956-192958)	Score: 85.38
Seq: GCTGGCGTAGCTCAGTCGGTAGAGCAGCTGATTTGTAATCAGCCGGtCGTAGGTTCGATTCCTATCGCCAGCTTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna8 (207635-207710)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (207668-207670)	Score: 87.26
Seq: AGGCCAGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGtTGGGGGTTCGATTCCCTCCTGGCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna5 (205880-205961)	Length: 82 bp
Type: Tyr	Anticodon: GTA at 35-37 (205914-205916)	Score: 63.90
Seq: GGAGGGGTTCCCGAGTGGCcaAAGGGATCAGACTGTAAATCTGACGGCTCAGCCTtCGTAGGTTCGAATCCTACCCCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna15 (711375-711449)	Length: 75 bp
Type: Val	Anticodon: GAC at 33-35 (711407-711409)	Score: 82.08
Seq: AGGCACGTAGCTCAGTGGTAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGATACCAATCGTGCCTACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (1418256-1418184)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (1418223-1418221)	Score: 89.58
Seq: GGGTGCTTAGCTCAGTTGGTAGAGCGTCGCCCTTACAAGGCGAATGtCGGGGGTTCGAATCCCTCAGCACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.