tRNAscan-SE Analysis of the Coxiella burnetii Genome

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[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	142604	142679	View	Thr	CGT	0	0	85.91	59.67	26.24	Both
chr	2	167224	167300	View	Ile	GAT	0	0	98.22	72.32	25.90	Both
chr	3	167305	167380	View	Ala	TGC	0	0	95.96	77.97	17.99	Both
chr	4	192923	192998	View	Thr	TGT	0	0	85.38	62.76	22.62	Both
chr	5	205880	205961	View	Tyr	GTA	0	0	63.90	32.90	31.00	Both
chr	6	206092	206165	View	Gly	TCC	0	0	71.80	50.20	21.60	Both
chr	7	206165	206240	View	Thr	GGT	0	0	90.17	66.39	23.78	Both
chr	8	207635	207710	View	Trp	CCA	0	0	87.26	63.58	23.68	Both
chr	9	368912	368987	View	Lys	TTT	0	0	96.37	74.63	21.74	Both
chr	10	610363	610436	View	Pro	TGG	0	0	82.48	62.25	20.23	Both
chr	11	611964	612037	View	Arg	TCT	0	0	77.32	57.75	19.57	Both
chr	12	612142	612217	View	His	GTG	0	0	81.83	64.03	17.80	Both
chr	13	654377	654452	View	Lys	CTT	0	0	86.94	61.97	24.97	Both
chr	14	679134	679218	View	Leu	TAG	0	0	72.28	37.97	34.31	Both
chr	15	711375	711449	View	Val	GAC	0	0	82.08	56.70	25.38	Both
chr	16	888985	889055	View	Gly	CCC	0	0	72.07	48.97	23.10	Both
chr	17	892873	892948	View	Phe	GAA	0	0	90.90	63.87	27.03	Both
chr	18	940995	941078	View	Leu	CAG	0	0	64.30	29.06	35.24	Both
chr	19	959650	959720	View	Cys	GCA	0	0	55.97	34.05	21.92	Both
chr	20	959764	959851	View	Leu	TAA	0	0	79.61	48.13	31.48	Both
chr	21	980120	980196	View	Arg	ACG	0	0	90.18	71.60	18.58	Both
chr	22	1043037	1043113	View	Arg	CCT	0	0	86.15	62.57	23.58	Both
chr	23	1110680	1110756	View	Arg	TCG	0	0	92.25	72.50	19.75	Both
chr	24	1758961	1759035	View	Gln	TTG	0	0	76.09	47.68	28.41	Both
chr	25	1772658	1772731	View	Met	CAT	0	0	85.33	58.91	26.42	Both
chr	26	1546000	1545924	View	Met	CAT	0	0	93.98	73.03	20.95	Both
chr	27	1418256	1418184	View	Val	TAC	0	0	89.58	68.08	21.50	Both
chr	28	1418081	1418005	View	Asp	GTC	0	0	94.55	73.65	20.90	Both
chr	29	1401806	1401725	View	Leu	GAG	0	0	57.22	25.49	31.73	Both
chr	30	1386805	1386729	View	Met	CAT	0	0	83.01	58.13	24.88	Both
chr	31	1266991	1266915	View	Pro	GGG	0	0	74.50	55.59	18.91	Both
chr	32	1163203	1163113	View	Ser	CGA	0	0	59.79	26.28	33.51	Both
chr	33	1128301	1128212	View	Ser	TGA	0	0	75.34	39.63	35.71	Both
chr	34	992908	992817	View	Ser	GCT	0	0	74.27	43.41	30.86	Both
chr	35	976240	976165	View	Gly	GCC	0	0	94.21	70.04	24.17	Both
chr	36	744663	744577	View	Leu	CAA	0	0	83.04	54.09	28.95	Both
chr	37	604754	604664	View	Ser	GGA	0	0	71.45	41.71	29.74	Both
chr	38	458664	458589	View	Asn	GTT	0	0	87.89	62.91	24.98	Both
chr	39	342959	342886	View	Pro	CGG	0	0	78.83	56.55	22.28	Both
chr	40	255593	255518	View	Glu	CTC	0	0	59.20	37.17	22.03	Both
chr	41	93392	93320	View	Ala	GGC	0	0	78.21	59.99	18.22	Both
chr	42	93275	93200	View	Glu	TTC	0	0	57.75	32.97	24.78	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.