tRNAscan-SE Analysis of the Coxiella burnetii Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTAGCTCCA... chr.trna41-AlaGGC Sc: 78.21  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCATAGCTCAGTTGGGAGAGCATCTGCCTTGCAAGCAGAGG...........GtCGGCGGTTCGACTCCGCCTGGCTCCACCA chr.trna3-AlaTGC Sc: 95.96  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAGTTGGAtAGAGTACCTGGCTACGAACCAGGCG...........GtCGGCGGTTCGAATCCGTCCGGGCGCGCCA chr.trna21-ArgACG Sc: 90.18  



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAGTTGGAtAGAGTAACCGGCTTCGAACCGGTTG...........GtCGGGGGTTCGAATCCCTCCGGGCGCGCCA chr.trna23-ArgTCG Sc: 92.25  

>>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCGGTGGCACAGTTGGAtAGCGCAGTCCCCTCCTAAGGGACAG...........GtCACAGGTTCAAATCCTGTCCGGGGCACCA chr.trna22-ArgCCT Sc: 86.15  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCACTCGGAtAGAGCATCGGCCTTCTAAGCCGAGG...........GtAGCAGGTTCGAATCCTGCCGGGCGCG... chr.trna11-ArgTCT Sc: 77.32  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCGGTAGCTCAGTCGGTAGAGCAGGTGACTGTTAATCACTTG...........GtCGGGGGTTCAAGTCCCTCCCGAGGAGCCA chr.trna38-AsnGTT Sc: 87.89  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCACTCCGCCA chr.trna28-AspGTC Sc: 94.55  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCTGGGTGGCAGAGTGGTC.ATGCAGCGGCCTGCAAAGCCGCGT...........ACGCCGGTTCGATTCCGGCCTCAGCCT... chr.trna19-CysGCA Sc: 55.97  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTGTCGCCAAGCGGTA.AGGCACTGGGTTTTGATCCCAGCA...........TtCCCAGGTTCGAATCCTGGCACCCCAGCCA chr.trna24-GlnTTG Sc: 76.09  



Glu tRNAs


>>>>>>>..>>>>..........<<<<.>>>>.........<<<<...............>>>>>.......<<<<<<<<<<<<....
GCTCCCTTCGTCTAGAGGCctA.GGACACCGCCCTCTCACAGCGGTA...........ACACGGGTTCGAATCCCGTAGGGAGCACCA chr.trna40-GluCTC Sc: 59.20  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAATCCCCTTGGGGACGCCA chr.trna42-GluTTC Sc: 57.75  



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGCTGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAATCTCGTTTCCCGCTCCA chr.trna35-GlyGCC Sc: 94.21  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGTTCAAT.GGTA.GAACATAAGCTTCCCAAGCTTAGA...........A.CGTGGGTTCGATTCCCATCACCCGCT... chr.trna16-GlyCCC Sc: 72.07  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGTTCAAC.GGTA.GAACTTCAGCCTTCCAAGCTGATA...........G.CGTGGGTTCGACTCCCATCACCCGCTCCG chr.trna6-GlyTCC Sc: 71.80  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGGCGTAGCTCAGTTGGTAGAGCCCCGGATTGTGATTCCGGTT...........GtCGTGGGTTCAAGTCCCATCGTCCACCCCA chr.trna12-HisGTG Sc: 81.83  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGCTCAGTTGGTtAGAGCACACCCCTGATAAGGGTGAG...........GtCGGAAGTTCAAATCTTCCCAGACCCACCA chr.trna2-IleGAT Sc: 98.22  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGTGGAACTGGTaGACACGCTGTCTTGAGGGGGCAGTGGG.GAAA.....CCCGTGCCGGTTCGAGTCCGGC.CTTCGGCA... chr.trna29-LeuGAG Sc: 57.22  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAGGTGGTGGAATTGGTaGACACGCAAGTTTCAGGTACTTGTGGGGGAAA....CCCCGTGGAGGTTCAAGTCCTCT.CCTCGGCA... chr.trna18-LeuCAG Sc: 64.30  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<....
GCGAGAGTGGCGGAATTGGTaGACGCGCTGGATTTAGGTTCCAGTAGG.TTAG.....CCTGTGAGAGTTCGAGTCTCTC.CTCTCGCACCA chr.trna14-LeuTAG Sc: 72.28  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAGGTGGCGGAATTGGTaGACGCGCCGGACTCAAAATCCGGTGGTGGCAA....CACCGTGAGGGTTCGAGTCCCTC.CCTCGGTACCA chr.trna36-LeuCAA Sc: 83.04  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGCGGAATTGGTaGACGCAAGGGACTTAAAATCCCTCGGGTGAATa...ACCCGTGCCGGTTCGAGTCCGGC.CCCGGGCACCA chr.trna20-LeuTAA Sc: 79.61  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGTTAGCTCAGTCGGTAGAGCAGCTGACTCTTAATCAGCGG...........GtCCACGGTTCGAGCCCGTGACGGCCCATCA chr.trna13-LysCTT Sc: 86.94  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCATAGGTTCAAATCCTATACGACCCACCA chr.trna9-LysTTT Sc: 96.37  



Met tRNAs


>>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCCCATAGCTCAGTT.GGTtAGAGCGATCGACTCATAATCGACAG...........GtCCCAGGTTCAAGTCCTGGTGGGCCCACCA chr.trna26-MetCAT Sc: 93.98  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTATGTAGCTCAGTT.GGTtAGAGCACGGCATTCATAATGCCGGT...........GtCGGTGGTTCAAGTCCACCCATAGCCA... chr.trna25-MetCAT Sc: 85.33  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
TGCGGGGTGGAGCAGTCtGGC.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTACCCCCGCTACCA chr.trna30-MetCAT Sc: 83.01  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCAGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGT...........GtCGGCAGTTCGATTCTGCCTCTGGCCACCA chr.trna17-PheGAA Sc: 90.90  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGG...........GtCGCAGGTTCAAATCCTGCCGTCCCGATCA chr.trna31-ProGGG Sc: 74.50  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTAGCTCAGCCtGGTAGAGCACTGCCTTCGGGAGGCAGGG...........GcCGGAGGTTCGAATCCTCTCACCCCGA... chr.trna39-ProCGG Sc: 78.83  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTATAGCGCAGTCtGGTAGCGCGCCTGCTTTGGGAGCAGGAT...........GtCGGGGGTTCAAATCCCTCTACCCCGA... chr.trna10-ProTGG Sc: 82.48  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>.........<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGCTCGAGTGGTtg.A.AGAGGCACGACTGGAAATCGTGT.GTGCG..TTAAtCACGTAC.CGAGGGTTCGAATCCCTC..CCTCTCCGCCA chr.trna37-SerGGA Sc: 71.45  

>>>>>>>..>>>.............<<<..>>>>.......<<<<...>>>>>.........<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTACCGAAGCGGTcacA.CCGGCACCGACTCGAAATCGGCTGAGGCC..TCAC...GGCCTACGCGGGTTCGAATCCCGC..CCTCTCCGCCA chr.trna32-SerCGA Sc: 59.79  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGCGGTtg.A.ATGCGACGGTCTTGAAAACCGTT.GAGGGG.GCAA..CTCCTC.CGAGGGTTCGAATCCCTC..CCTCTCCGCCA chr.trna33-SerTGA Sc: 75.34  


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>>>.....<<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCCGAGAGGCtg.A.AGGCGCTCCCCTGCTAAGGGAGT.ATGGGGCGAAA.GCTCCAT.CGAGGGTTCGAATCCCTC..TCTCTCCGCCA chr.trna34-SerGCT Sc: 74.27  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCACATAGCTCAGGCGGTAGAGCACTTCCTTGGTAAGGAAGAG...........GtCACCGGTTCAAGTCCGGTTGTGGGCTCCA chr.trna7-ThrGGT Sc: 90.17  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGTGTAGCTCAGGTGGTAGAGCAACTGATTCGTAATCAGTAG...........GtCCGCAGTTCGAGTCTGCGCACCGGCATCA chr.trna1-ThrCGT Sc: 85.91  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGCGTAGCTCAGTCGGTAGAGCAGCTGATTTGTAATCAGCCG...........GtCGTAGGTTCGATTCCTATCGCCAGCTTCA chr.trna4-ThrTGT Sc: 85.38  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCCAGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAG...........GtTGGGGGTTCGATTCCCTCCTGGCCTGCCA chr.trna8-TrpCCA Sc: 87.26  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGGTTCCCGAGTGGCcaA.AGGGATCAGACTGTAAATCTGACGGCTCA.....GCCTtCGTAGGTTCGAATCCTAC.CCCCTCCA... chr.trna5-TyrGTA Sc: 63.90  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCACGTAGCTCAGT.GGTA.GAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGATACCAATCGTGCCTACCA chr.trna15-ValGAC Sc: 82.08  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGCTTAGCTCAGTTGGTA.GAGCGTCGCCCTTACAAGGCGAAT...........GtCGGGGGTTCGAATCCCTCAGCACCCA... chr.trna27-ValTAC Sc: 89.58

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.