tRNAscan-SE Analysis of the Corynebacterium glutamicum ATCC 13032 Bielefeld Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	42	2658974	2658899	Ala	GGC	0	0	83.79	64.07	19.72	Both

chr	2	14939	15011	Ala	TGC	0	0	88.32	68.84	19.48	Both
chr	3	23500	23572	Ala	TGC	0	0	88.32	68.84	19.48	Both
chr	5	23991	24063	Ala	TGC	0	0	88.32	68.84	19.48	Both

chr	10	241638	241710	Arg	ACG	0	0	78.87	60.36	18.51	Both
chr	9	233528	233603	Arg	ACG	0	0	79.49	60.96	18.53	Both

chr	56	1237936	1237864	Arg	CCG	0	0	68.77	53.74	15.03	Both

chr	58	898773	898698	Arg	CCT	0	0	77.08	54.57	22.51	Both

chr	31	2572697	2572773	Arg	TCT	0	0	79.57	62.50	17.07	Both

chr	29	2368522	2368597	Asn	GTT	0	0	81.06	52.03	29.03	Both
chr	30	2368733	2368808	Asn	GTT	0	0	81.06	52.03	29.03	Both

chr	39	2698822	2698749	Asp	GTC	0	0	86.14	67.34	18.80	Both
chr	40	2696026	2695953	Asp	GTC	0	0	86.14	67.34	18.80	Both

chr	51	1777409	1777339	Cys	GCA	0	0	65.00	38.25	26.75	Both

chr	21	1367060	1367131	Gln	CTG	0	0	54.47	23.82	30.65	Both
chr	23	1367309	1367380	Gln	CTG	0	0	54.47	23.82	30.65	Both

chr	57	1019795	1019721	Gln	TTG	0	0	45.33	10.30	35.03	Both

chr	22	1367170	1367242	Glu	CTC	0	0	58.89	36.55	22.34	Both
chr	24	1367418	1367490	Glu	CTC	0	0	58.89	36.55	22.34	Both
chr	25	1369040	1369115	Glu	CTC	0	0	60.37	38.00	22.37	Both

chr	38	2698936	2698861	Glu	TTC	0	0	55.55	28.82	26.73	Both

chr	35	3010857	3010930	Gly	CCC	0	0	86.83	68.13	18.70	Both

chr	48	1777737	1777665	Gly	GCC	0	0	86.03	61.46	24.57	Both
chr	50	1777523	1777451	Gly	GCC	0	0	86.03	61.46	24.57	Both
chr	53	1777220	1777145	Gly	GCC	0	0	86.65	62.05	24.60	Both

chr	44	2532355	2532281	Gly	TCC	0	0	56.57	27.25	29.32	Eufind

chr	32	2574634	2574709	His	GTG	0	0	74.50	57.33	17.17	Both

chr	1	14851	14927	Ile	GAT	0	0	96.92	71.74	25.18	Both
chr	4	23903	23979	Ile	GAT	0	0	96.92	71.74	25.18	Both

chr	55	1415108	1415032	Leu	CAA	0	0	58.64	43.85	14.79	Both

chr	6	49705	49791	Leu	CAG	0	0	77.60	50.70	26.90	Both

chr	26	1610889	1610974	Leu	GAG	0	0	64.06	38.60	25.46	Both
chr	27	1611061	1611149	Leu	GAG	0	0	64.67	39.20	25.47	Both

chr	20	1039983	1040059	Leu	TAA	0	0	66.16	47.60	18.56	Both

chr	43	2622002	2621918	Leu	TAG	0	0	63.81	34.75	29.06	Both

chr	34	2594485	2594557	Lys	CTT	0	0	83.30	59.27	24.03	Both
chr	33	2594322	2594397	Lys	CTT	0	0	93.49	69.44	24.05	Both

chr	37	2700878	2700806	Lys	TTT	0	0	78.80	59.53	19.27	Both

chr	16	496339	496413	Met	CAT	0	0	77.34	56.89	20.45	Both
chr	18	834140	834216	Met	CAT	0	0	78.91	56.23	22.68	Both
chr	19	849823	849899	Met	CAT	0	0	78.91	56.23	22.68	Both
chr	46	2366740	2366664	Met	CAT	0	0	89.47	70.47	19.00	Both

chr	41	2695920	2695845	Phe	GAA	0	0	91.27	68.92	22.35	Both

chr	59	292542	292466	Pro	CGG	0	0	76.64	51.04	25.60	Both

chr	54	1516766	1516690	Pro	GGG	0	0	73.63	46.32	27.31	Both

chr	45	2529972	2529899	Pro	TGG	0	0	86.25	66.18	20.07	Both

chr	11	244295	244385	Ser	CGA	0	0	63.31	34.93	28.38	Eufind

chr	8	233410	233498	Ser	GCT	0	0	58.06	24.63	33.43	Both

chr	60	256310	256223	Ser	GGA	0	0	53.42	19.90	33.52	tRNAscan

chr	7	221751	221838	Ser	TGA	0	0	57.95	15.48	42.47	Both

chr	12	329630	329705	Thr	CGT	0	0	94.44	70.11	24.33	Both

chr	14	495903	495975	Thr	GGT	0	0	76.93	48.96	27.97	Both
chr	15	496228	496300	Thr	GGT	0	0	76.93	48.96	27.97	Both

chr	36	2764143	2764068	Thr	TGT	0	0	78.48	51.74	26.74	Both

chr	17	496507	496582	Trp	CCA	0	0	82.22	59.75	22.47	Both

chr	13	495198	495283	Tyr	GTA	0	0	52.29	21.41	30.88	Both

chr	28	1778085	1778156	Val	CAC	0	0	75.57	48.11	27.46	Both

chr	49	1777631	1777557	Val	GAC	0	0	82.06	64.21	17.85	Both
chr	52	1777328	1777254	Val	GAC	0	0	82.06	64.21	17.85	Both

chr	47	2350441	2350366	Val	TAC	0	0	81.07	62.04	19.03	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.