tRNAscan-SE Analysis of the Corynebacterium glutamicum ATCC 13032 Bielefeld Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGG...........GtCACGGGTTCGAATCCCGTTAGCTCCACAA chr.trna42-AlaGGC Sc: 83.79  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGAT...........GtCAGGAGTTCGATTCTCCTATGCTCCA... chr.trna5-AlaTGC Sc: 88.32  
GGGGCATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGAT...........GtCAGGAGTTCGATTCTCCTATGCTCCA... chr.trna3-AlaTGC Sc: 88.32  
GGGGCATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGAT...........GtCAGGAGTTCGATTCTCCTATGCTCCA... chr.trna2-AlaTGC Sc: 88.32  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAACGGAt.A.GAGCATCTGACTACGGATCAGAAG...........GtTGGGGGTTCGAATCCCTCCGGGCGCACAA chr.trna9-ArgACG Sc: 79.49  
GCGCCCGTAGCTCAACGGAt.A.GAGCATCTGACTACGGATCAGAAG...........GtTGGGGGTTCGAATCCCTCCGGGCGCA... chr.trna10-ArgACG Sc: 78.87  


>>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCTCCGTAGCTCAGTGGAt.A.GAGCACCGGTTTCCGGTACCGAAG...........GtCGTAGGTTCGACTCCTATCGGGGGCA... chr.trna56-ArgCCG Sc: 68.77  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTTGGTAGCTCAGTGGAt.A.GAGCACCGCTCTCCTAAAGCGGGT...........GtCGGAGGTTCGATTCCTCTCCAGGGCACAA chr.trna58-ArgCCT Sc: 77.08  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTCCATAGCTCAGTGGAttA.GAGCAACCGGCTTCTACCCGGTTG...........GtCGCGGGTTCGAATCCTGCTGGGGGCACCG chr.trna31-ArgTCT Sc: 79.57  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCCATAGCTCAGTTGGCAGAGCATTCGACTGTTAATCGAAGG...........GtCACTGGTTCGAGCCCAGTTGGAGGAGCAA chr.trna30-AsnGTT Sc: 81.06  
TCCTCCATAGCTCAGTTGGCAGAGCATTCGACTGTTAATCGAAGG...........GtCACTGGTTCGAGCCCAGTTGGAGGAGCAA chr.trna29-AsnGTT Sc: 81.06  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCTGTGGCGCAGTTGGTtAGCGCGCCGCCCTGTCACGGCGGAG...........GtCGCGGGTTCAAGTCCCGTCAGGGTCG... chr.trna40-AspGTC Sc: 86.14  
GGCCCTGTGGCGCAGTTGGTtAGCGCGCCGCCCTGTCACGGCGGAG...........GtCGCGGGTTCAAGTCCCGTCAGGGTCG... chr.trna39-AspGTC Sc: 86.14  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTGGAATGGCCGAGTGGTG.AGGCAACGGTCTGCAAAACCGTGC...........ACACGGGTTCGATTCCCGTTTCCACCT... chr.trna51-CysGCA Sc: 65.00  



Gln tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
TGGCCTATGGTGTAATTGGCAACACAACGGTTTCTGGTACCGTC...........AtTCTAGGTTCGAGTCCTGG.TAGGCCAG... chr.trna23-GlnCTG Sc: 54.47  
TGGCCTATGGTGTAATTGGCAACACAACGGTTTCTGGTACCGTC...........AtTCTAGGTTCGAGTCCTGG.TAGGCCAG... chr.trna21-GlnCTG Sc: 54.47  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
TTCCCCATGGTGTAATCGGCAACACTACGGTTTTTGGTACCGTC...........AtTCTAGGTTCGAGTCCTGG.TGGGGAAGCAA chr.trna57-GlnTTG Sc: 45.33  



Glu tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCCCGTTCGTCTAGTGGCctA.GGACGCCGGCCTCTCACGCCGGTA...........ACACGGGTTCAAATCCCGTACGGGGTACAA chr.trna25-GluCTC Sc: 60.37  
GCCCCGTTCGTCTAGCGGCctA.GGACGCCGGCCTCTCACGCCGGTA...........ACACGGGTTCAAATCCCGTACGGGGTA... chr.trna24-GluCTC Sc: 58.89  
GCCCCGTTCGTCTAGCGGCctA.GGACGCCGGCCTCTCACGCCGGTA...........ACACGGGTTCAAATCCCGTACGGGGTA... chr.trna22-GluCTC Sc: 58.89  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCTCCCATCGTCTAGGGGCctA.GGACACTGCCCTTTCACGGCAGCG...........ACACGGGTTCGAATCCCGTTGGGAGTACTA chr.trna38-GluTTC Sc: 55.55  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGATGTAGCGCAGTTGGT.A.GCGCATCACCTTGCCAAGGTGAGG...........GtCGCGAGTTCGAGTCTCGTCATCCGCTCAA chr.trna53-GlyGCC Sc: 86.65  
GCGGATGTAGCGCAGTTGGT.A.GCGCATCACCTTGCCAAGGTGAGG...........GtCGCGAGTTCGAGTCTCGTCATCCGCT... chr.trna50-GlyGCC Sc: 86.03  
GCGGATGTAGCGCAGTTGGT.A.GCGCATCACCTTGCCAAGGTGAGG...........GtCGCGAGTTCGAGTCTCGTCATCCGCT... chr.trna48-GlyGCC Sc: 86.03  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGTGTAGTTCAAT.GGT.A.GAACTCCTGCTTCCCAAGCAGGCG...........G.CGCGGGTTCGATTCCCGTCACCGGCTCCA chr.trna35-GlyCCC Sc: 86.83  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGAATGTCGTATAAT.GGCtA.TTACCTCAGCCTTCCAAGCTGATG...........A.CGCGGGTTCGATTCCCGTCATTCCCTCAA chr.trna44-GlyTCC Sc: 56.57  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTGTAGTTCAGCTGGTAGAGCACCAGGTTGTGATCCTGGGT...........GtCGCGGGTTCGAGCCCCGTCAGCCACCCCG chr.trna32-HisGTG Sc: 74.50  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTATAGCTCAGTCGGTtAGAGCGCATCGCTGATAACGATGAG...........GtCGCAAGTTCGATTCTTGCTAGGCCCACCA chr.trna4-IleGAT Sc: 96.92  
GGGCCTATAGCTCAGTCGGTtAGAGCGCATCGCTGATAACGATGAG...........GtCGCAAGTTCGATTCTTGCTAGGCCCACCA chr.trna1-IleGAT Sc: 96.92  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGCGGAAT.GGCaG.ACGCGCTAGCTTGAGGTGCTAGT.GTCCTATTA.....ACGGACG.TGGGGGTTCAAGTCCCCC.CCCGGGCACAA chr.trna27-LeuGAG Sc: 64.67  
GCCCGGGTGGCGGAAT.GGCaG.ACGCGCTAGCTTGAGGTGCTAGT.GTCCTATTA.....ACGGACG.TGGGGGTTCAAGTCCCCC.CCCGGGCA... chr.trna26-LeuGAG Sc: 64.06  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGCGGAATTGGCaG.ACGCGCTGGCTTCAGGTGCCAGT.GTTC..GCAA......GGACG.TGGGGGTTCAAGTCCCCC.CCCGGGCACCA chr.trna6-LeuCAG Sc: 77.60  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>..........<<<<<...>>>>>.......<<<<<.<<<<<<<....
GCGCTTGTGGCGGAATTGGCaG.ACGCGCTGGATTTAGGTTCCAGT.GTCCT..........AGGACG.TGAGAGTTCAAGTCTCTC.CAGGCGCACAA chr.trna43-LeuTAG Sc: 63.81  

>>>>>>>..>>>............<<<.>>>>.........<<<<.........................>>>>>.......<<<<<.<<<<<<<....
GCCCTTGTAGCCCAATTGGCaG.AGGCAACGGATTCAAAACCCGTCC....................AgTGTGAGTTCGAGTCTCAC.CAGGGGCACCA chr.trna55-LeuCAA Sc: 58.64  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.........................>>>>>.......<<<<<.<<<<<<<....
GCCCCCATAGCCCAATCGGCaG.AGGCGGTTGACTTAAAATCAATAC....................AgTGTGGGTTCGAGTCCCAC.TGGGGGCACCA chr.trna20-LeuTAA Sc: 66.16  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTCATTAGCTCAATTGGTAGAGCATCTGACTCTTAATCAGAGG...........GtTCGGGGTTCGATTCCCTGATGACGCACCA chr.trna33-LysCTT Sc: 93.49  
GCGTCATTAGCTCAATTGGCAGAGCATCTGACTCTTAATCAGAGG...........GtTCGGGGTTCGATTCCCTGATGACGCA... chr.trna34-LysCTT Sc: 83.30  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCCTATAGCTCAGTTGGTAGAGCTACGGACTTTTAATCCGCAG...........GtCTTGGGTTCGAGTCCCAATGGGCCCA... chr.trna37-LysTTT Sc: 78.80  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGTC.GGTtA.GAGCCGTGGACTCATAATCCATTG...........GtCCCGGGTTCGAGCCCCGGTGGCCCCACCA chr.trna46-MetCAT Sc: 89.47  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCTcGGT.A.GCTCGCTGGGCTCATAACCCAGAG...........GtCGTAGGTTCGAATCCTGCCCCCGCTACTA chr.trna19-MetCAT Sc: 78.91  
CGCGGGGTGGAGCAGCTcGGT.A.GCTCGCTGGGCTCATAACCCAGAG...........GtCGTAGGTTCGAATCCTGCCCCCGCTACTA chr.trna18-MetCAT Sc: 78.91  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGTGTAGCTCAGT..GGT.A.GAGCAAGCGACTCATAATCGCTGT...........GtCGCGAGTTCAATTCTCGCCATCGCTACCG chr.trna16-MetCAT Sc: 77.34  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCAGATAGCTCAGTCGGTAGAGCGTTCGCCTGAAAAGTGAAAG...........GtCGCCGGTTCGATCCCGGCTCTGGCCACCA chr.trna41-PheGAA Sc: 91.27  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGACTATGGCGCAGCTtGGTAGCGCACTACACTGGGGGTGTAGGG...........GtCGCAGGTTCAAATCCTGTTAGTCCGACAA chr.trna54-ProGGG Sc: 73.63  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGATATGGCGCAGCTtGGTAGCGCGTGCCGTTCGGGACGGTAAG...........GtCGCAGGTTCGAATCCTGTTATCCCGACAA chr.trna59-ProCGG Sc: 76.64  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTGGCGCAGCTtGGTAGCGCACCTGCTTTGGGAGCAGGGG...........GtCGCAGGTTCAAATCCTGTCGCCCCGA... chr.trna45-ProTGG Sc: 86.25  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGGATTCGACTAGCGGCctA.TGTCGCTCGCCTGGAACGCGGGTTGGGA...GCAA...TCCCTCAGGGGTTCAAATCCCCT..ATCCTCCGCAA chr.trna60-SerGGA Sc: 53.42  

>>>>>>>...>>............<<..>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGTGGCGTGTCCGAGCGGCcgA.AGGTGTTCGCCTCGAAAGCGAAT.GTTGGG.TAATCCCCAAC.CGGGGGTTCAAATCCCCC..CGCCACCGCCA chr.trna11-SerCGA Sc: 63.31  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGACGTGACAGAGCGGCcgA.ATGTACTGGTCTTGAAAACCAGCGATGG...GAAA...CCATCCGAGGGTTCAAATCCCTC..CGTCTCCGCAA chr.trna7-SerTGA Sc: 57.95  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGACGTGCCAGAGCGGCcgA.ATGGGACTCACTGCTAATGAGTT.GTCCTCTTAACGGGGGAC.CGGAGGTTCAAATCCTCT..CGTCTCCG... chr.trna8-SerGCT Sc: 58.06  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCCTTAGCTCAGTCGGTAGAGCGTTTCCATGGTAAGGAAAAG...........GtCAACAGTTCGATTCTGTTAGGGGGCT... chr.trna15-ThrGGT Sc: 76.93  
GCCCCCTTAGCTCAGTCGGTAGAGCGTTTCCATGGTAAGGAAAAG...........GtCAACAGTTCGATTCTGTTAGGGGGCT... chr.trna14-ThrGGT Sc: 76.93  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCTTTAGCTCAGTCGGTAGAGCGTCTCACTCGTAATGAGAAG...........GtCGCGAGTTCGATTCTCGCAAGCGGCTCCA chr.trna12-ThrCGT Sc: 94.44  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGAGTGGCGCAATTGGCAGCGCAACGCACTTGTAATGCGTAG...........GtTGAGAGTTCAAGTCTCTTCTCCAGCTCAA chr.trna36-ThrTGT Sc: 78.48  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGCGTAGCTCAATTGGCAGAGCAACGGTCTCCAAAACCGTAG...........GtTGCAGGTTCGATTCCTGTCGCCCCTGCAA chr.trna17-TrpCCA Sc: 82.22  



Tyr tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.>>>.>......<.<<<...>>>>>.......<<<<<.<<<<<<<....
GCCAGATTGCCCGAGCGGCcaA.TGGGAGCGGACTGTAAATCCGTCGGCTT......GCGCCTaCGTAGGTTCGAATCCTAC.ATCTGGCACAA chr.trna13-TyrGTA Sc: 52.29  



Val tRNAs



>>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<....
GCGCGTTTAGCTCAGC.GGGA.GAGCGCTTCCCTGACACGGAAGAG...........GtCACTGGTTCAATCCCAGTATCGCGCACCA chr.trna52-ValGAC Sc: 82.06  
GCGCGTTTAGCTCAGC.GGGA.GAGCGCTTCCCTGACACGGAAGAG...........GtCACTGGTTCAATCCCAGTATCGCGCACCA chr.trna49-ValGAC Sc: 82.06  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCTATGGCTCAGT.GGAA.GAGCGTTCCGTTCACACCGGAAAG...........GtCGCTGGTTCGAACCCAGCTAGGACCA... chr.trna28-ValCAC Sc: 75.57  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCTTTAGCTCAGCTGGAA.GAGCAGCTGGTTTACACCCAGCAG...........GtCGGCGGTTCGAGCCCGTCAGGGCGCACAA chr.trna47-ValTAC Sc: 81.07

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.