tRNAscan-SE Analysis of the Corynebacterium glutamicum Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	14851	14927	Ile	GAT	0	0	96.92	71.74	25.18	Both
chr	2	14939	15011	Ala	TGC	0	0	88.32	68.84	19.48	Both
chr	3	23500	23572	Ala	TGC	0	0	88.32	68.84	19.48	Both
chr	4	23903	23979	Ile	GAT	0	0	96.92	71.74	25.18	Both
chr	5	23991	24063	Ala	TGC	0	0	88.32	68.84	19.48	Both
chr	6	49705	49791	Leu	CAG	0	0	77.60	50.70	26.90	Both
chr	7	221750	221837	Ser	TGA	0	0	57.95	15.48	42.47	Both
chr	8	233409	233497	Ser	GCT	0	0	58.06	24.63	33.43	Both
chr	9	233527	233602	Arg	ACG	0	0	79.49	60.96	18.53	Both
chr	10	241637	241709	Arg	ACG	0	0	78.87	60.36	18.51	Both
chr	11	244294	244384	Ser	CGA	0	0	63.31	34.93	28.38	Eufind
chr	12	329629	329704	Thr	CGT	0	0	94.44	70.11	24.33	Both
chr	13	495199	495284	Tyr	GTA	0	0	52.29	21.41	30.88	Both
chr	14	495904	495976	Thr	GGT	0	0	76.93	48.96	27.97	Both
chr	15	496229	496301	Thr	GGT	0	0	76.93	48.96	27.97	Both
chr	16	496340	496414	Met	CAT	0	0	77.34	56.89	20.45	Both
chr	17	496508	496583	Trp	CCA	0	0	82.22	59.75	22.47	Both
chr	18	832667	832743	Met	CAT	0	0	78.91	56.23	22.68	Both
chr	19	848352	848428	Met	CAT	0	0	78.91	56.23	22.68	Both
chr	20	1038513	1038589	Leu	TAA	0	0	66.16	47.60	18.56	Both
chr	21	1365593	1365664	Gln	CTG	0	0	54.47	23.82	30.65	Both
chr	22	1365703	1365775	Glu	CTC	0	0	58.89	36.55	22.34	Both
chr	23	1365842	1365913	Gln	CTG	0	0	54.47	23.82	30.65	Both
chr	24	1365951	1366023	Glu	CTC	0	0	58.89	36.55	22.34	Both
chr	25	1367573	1367648	Glu	CTC	0	0	60.37	38.00	22.37	Both
chr	26	1609422	1609507	Leu	GAG	0	0	64.06	38.60	25.46	Both
chr	27	1609594	1609682	Leu	GAG	0	0	64.67	39.20	25.47	Both
chr	28	1776613	1776684	Val	CAC	0	0	75.57	48.11	27.46	Both
chr	29	2396848	2396923	Asn	GTT	0	0	81.06	52.03	29.03	Both
chr	30	2397059	2397134	Asn	GTT	0	0	81.06	52.03	29.03	Both
chr	31	2601022	2601098	Arg	TCT	0	0	79.57	62.50	17.07	Both
chr	32	2602959	2603034	His	GTG	0	0	74.50	57.33	17.17	Both
chr	33	2622649	2622724	Lys	CTT	0	0	93.49	69.44	24.05	Both
chr	34	2622812	2622884	Lys	CTT	0	0	83.30	59.27	24.03	Both
chr	35	3037552	3037625	Gly	CCC	0	0	86.83	68.13	18.70	Both
chr	36	2790835	2790760	Thr	TGT	0	0	78.48	51.74	26.74	Both
chr	37	2729208	2729136	Lys	TTT	0	0	78.80	59.53	19.27	Both
chr	38	2727266	2727191	Glu	TTC	0	0	55.55	28.82	26.73	Both
chr	39	2727152	2727079	Asp	GTC	0	0	86.14	67.34	18.80	Both
chr	40	2724356	2724283	Asp	GTC	0	0	86.14	67.34	18.80	Both
chr	41	2724250	2724175	Phe	GAA	0	0	91.27	68.92	22.35	Both
chr	42	2687301	2687226	Ala	GGC	0	0	83.79	64.07	19.72	Both
chr	43	2650329	2650245	Leu	TAG	0	0	63.81	34.75	29.06	Both
chr	44	2560680	2560606	Gly	TCC	0	0	56.57	27.25	29.32	Eufind
chr	45	2558297	2558224	Pro	TGG	0	0	86.25	66.18	20.07	Both
chr	46	2395066	2394990	Met	CAT	0	0	89.47	70.47	19.00	Both
chr	47	2378769	2378694	Val	TAC	0	0	81.07	62.04	19.03	Both
chr	48	1776265	1776193	Gly	GCC	0	0	86.03	61.46	24.57	Both
chr	49	1776159	1776085	Val	GAC	0	0	82.06	64.21	17.85	Both
chr	50	1776051	1775979	Gly	GCC	0	0	86.03	61.46	24.57	Both
chr	51	1775937	1775867	Cys	GCA	0	0	65.00	38.25	26.75	Both
chr	52	1775856	1775782	Val	GAC	0	0	82.06	64.21	17.85	Both
chr	53	1775748	1775673	Gly	GCC	0	0	86.65	62.05	24.60	Both
chr	54	1515299	1515223	Pro	GGG	0	0	73.63	46.32	27.31	Both
chr	55	1413641	1413565	Leu	CAA	0	0	58.64	43.85	14.79	Both
chr	56	1236468	1236396	Arg	CCG	0	0	68.77	53.74	15.03	Both
chr	57	1018325	1018251	Gln	TTG	0	0	45.33	10.30	35.03	Both
chr	58	897302	897227	Arg	CCT	0	0	77.08	54.57	22.51	Both
chr	59	292542	292466	Pro	CGG	0	0	76.64	51.04	25.60	Both
chr	60	256309	256222	Ser	GGA	0	0	53.42	19.90	33.52	tRNAscan

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.