tRNAscan-SE Analysis of the Corynebacterium efficiens YS-314 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	37	2584931	2584859	View	Ala	GGC	0	0	83.17	63.47	19.70	Both
chr	38	2584827	2584755	View	Ala	GGC	0	0	83.17	63.47	19.70	Both

chr	2	17429	17501	View	Ala	TGC	0	0	88.32	68.84	19.48	Both

chr	7	206956	207031	View	Arg	ACG	0	0	79.49	60.96	18.53	Both
chr	6	204771	204846	View	Arg	ACG	0	0	87.17	68.64	18.53	Both

chr	52	1334786	1334714	View	Arg	CCG	0	0	68.77	53.74	15.03	Both

chr	54	975284	975209	View	Arg	CCT	0	0	84.76	62.24	22.52	Both

chr	26	2504980	2505056	View	Arg	TCT	0	0	78.06	61.01	17.05	Both

chr	25	2299084	2299156	View	Asn	GTT	0	0	80.44	51.44	29.00	Both

chr	35	2606464	2606391	View	Asp	GTC	0	0	86.14	67.34	18.80	Both
chr	34	2609022	2608946	View	Asp	GTC	0	0	86.76	67.94	18.82	Both

chr	45	1886907	1886837	View	Cys	GCA	0	0	65.00	38.25	26.75	Both

chr	17	1468116	1468187	View	Gln	CTG	0	0	51.41	18.06	33.35	Both
chr	20	1478138	1478209	View	Gln	CTG	0	0	51.41	18.06	33.35	Both

chr	53	1092027	1091956	View	Gln	TTG	0	0	53.34	16.44	36.90	Both

chr	19	1469098	1469170	View	Glu	CTC	0	0	56.96	34.62	22.34	Both
chr	18	1468227	1468302	View	Glu	CTC	0	0	57.58	35.22	22.36	Both
chr	21	1478249	1478324	View	Glu	CTC	0	0	57.58	35.22	22.36	Both

chr	33	2609127	2609052	View	Glu	TTC	0	0	56.87	31.36	25.51	Both

chr	30	2833871	2833944	View	Gly	CCC	0	0	86.66	67.96	18.70	Both

chr	44	1887021	1886949	View	Gly	GCC	0	0	86.03	61.46	24.57	Both
chr	47	1886720	1886648	View	Gly	GCC	0	0	86.03	61.46	24.57	Both
chr	49	1886504	1886432	View	Gly	GCC	0	0	86.03	61.46	24.57	Both

chr	40	2462844	2462773	View	Gly	TCC	0	0	55.95	26.65	29.30	Eufind

chr	27	2517603	2517678	View	His	GTG	0	0	74.50	57.33	17.17	Both

chr	1	17345	17421	View	Ile	GAT	0	0	96.92	71.74	25.18	Both

chr	51	1521953	1521877	View	Leu	CAA	0	0	61.31	48.92	12.39	Both

chr	3	42450	42535	View	Leu	CAG	0	0	65.51	41.74	23.77	Both

chr	22	1733328	1733413	View	Leu	GAG	0	0	58.10	38.48	19.62	Both
chr	23	1733516	1733601	View	Leu	GAG	0	0	59.73	36.63	23.10	Both

chr	16	1105057	1105130	View	Leu	TAA	0	0	57.16	38.63	18.53	Both

chr	39	2555039	2554958	View	Leu	TAG	0	0	67.86	37.11	30.75	Both

chr	28	2524659	2524731	View	Lys	CTT	0	0	85.19	61.16	24.03	Both
chr	29	2524825	2524900	View	Lys	CTT	0	0	93.49	69.44	24.05	Both

chr	32	2621759	2621684	View	Lys	TTT	0	0	89.17	73.03	16.14	Both

chr	12	522280	522351	View	Met	CAT	0	0	76.72	56.29	20.43	Both
chr	14	861148	861224	View	Met	CAT	0	0	78.91	56.23	22.68	Both
chr	15	861809	861885	View	Met	CAT	0	0	78.91	56.23	22.68	Both
chr	42	2297292	2297219	View	Met	CAT	0	0	86.87	70.78	16.09	Both

chr	36	2606358	2606283	View	Phe	GAA	0	0	83.59	61.25	22.34	Both

chr	55	295658	295582	View	Pro	CGG	0	0	89.76	65.76	24.00	Both

chr	50	1646408	1646332	View	Pro	GGG	0	0	74.42	47.83	26.59	Both

chr	41	2462401	2462328	View	Pro	TGG	0	0	87.11	67.04	20.07	Both

chr	8	209554	209644	View	Ser	CGA	0	0	63.18	34.72	28.46	Eufind

chr	5	204649	204737	View	Ser	GCT	0	0	55.16	23.59	31.57	Both

chr	56	219915	219828	View	Ser	GGA	0	0	53.42	19.90	33.52	tRNAscan

chr	4	194877	194961	View	Ser	TGA	0	0	57.34	14.89	42.45	Both

chr	9	338816	338891	View	Thr	CGT	0	0	92.70	67.51	25.19	Both

chr	11	522152	522227	View	Thr	GGT	0	0	75.66	47.67	27.99	Both

chr	31	2672447	2672375	View	Thr	TGT	0	0	78.95	52.95	26.00	Both

chr	13	522508	522583	View	Trp	CCA	0	0	82.04	59.56	22.48	Both

chr	10	521492	521574	View	Tyr	GTA	0	0	51.67	20.81	30.86	Both

chr	24	1887377	1887451	View	Val	CAC	0	0	76.19	48.71	27.48	Both

chr	46	1886827	1886753	View	Val	GAC	0	0	82.06	64.21	17.85	Both
chr	48	1886611	1886537	View	Val	GAC	0	0	82.06	64.21	17.85	Both

chr	43	2275370	2275298	View	Val	TAC	0	0	80.45	61.45	19.00	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.