tRNAscan-SE Analysis of the Corynebacterium efficiens YS-314 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGG...........GtCACGGGTTCGAATCCCGTTAGCTCCA... chr.trna38-AlaGGC Sc: 83.17  
GGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGG...........GtCACGGGTTCGAATCCCGTTAGCTCCA... chr.trna37-AlaGGC Sc: 83.17  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGAT...........GtCAGGAGTTCGATTCTCCTATGCTCCA... chr.trna2-AlaTGC Sc: 88.32  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAACGGAt.A.GAGCATCTGACTACGGATCAGAAG...........GtTGGGGGTTCGAATCCCTCCGGGCGCACCA chr.trna6-ArgACG Sc: 87.17  
GCGCCCGTAGCTCAACGGAt.A.GAGCATCTGACTACGGATCAGAAG...........GtTGGGGGTTCGAATCCCTCCGGGCGCACAA chr.trna7-ArgACG Sc: 79.49  


>>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCTCCGTAGCTCAGTGGAt.A.GAGCACCGGTTTCCGGTACCGAAG...........GtCGTAGGTTCGACTCCTATCGGGGGCA... chr.trna52-ArgCCG Sc: 68.77  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTTGGTAGCTCAGTGGAt.A.GAGCACCGCTCTCCTAAAGCGGGT...........GtCGGAGGTTCGATTCCTCTCCAGGGCACCA chr.trna54-ArgCCT Sc: 84.76  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTCCATAGCTCAGTGGAttA.GAGCAACCGGCTTCTACCCGGTTG...........GtCGCGGGTTCGAATCCTGCTGGGGGCGCAA chr.trna26-ArgTCT Sc: 78.06  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCCATAGCTCAGTTGGCAGAGCATTCGACTGTTAATCGAAGG...........GtCACTGGTTCGAGCCCAGTTGGAGGAG... chr.trna25-AsnGTT Sc: 80.44  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCTGTGGCGCAGTTGGTtAGCGCGCCGCCCTGTCACGGCGGAG...........GtCGCGGGTTCAAGTCCCGTCAGGGTCGCAA chr.trna34-AspGTC Sc: 86.76  
GGCCCTGTGGCGCAGTTGGTtAGCGCGCCGCCCTGTCACGGCGGAG...........GtCGCGGGTTCAAGTCCCGTCAGGGTCG... chr.trna35-AspGTC Sc: 86.14  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTGGAATGGCCGAGTGGTG.AGGCAACGGTCTGCAAAACCGTGC...........ACACGGGTTCGATTCCCGTTTCCACCT... chr.trna45-CysGCA Sc: 65.00  



Gln tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
TGGCCTATGGTGTAATTGGCAACACAAGGGTTTCTGGTACCCTC...........AtTCTAGGTTCGAGTCCTGG.TAGGCCAG... chr.trna20-GlnCTG Sc: 51.41  
TGGCCTATGGTGTAATTGGCAACACAAGGGTTTCTGGTACCCTC...........AtTCTAGGTTCGAGTCCTGG.TAGGCCAG... chr.trna17-GlnCTG Sc: 51.41  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
TTCCCCATGGTGTAATTGGCAACACAGCGGTTTTTGGTACCGTC...........GtTCAAGGTTCGAGTCCTTG.TGGGGAAG... chr.trna53-GlnTTG Sc: 53.34  



Glu tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCCCGTTCGTCTAGAGGCctA.GGACGCCGGCCTCTCACGCCGGTA...........ACACGGGTTCGAATCCCGTACGGGGTACAA chr.trna21-GluCTC Sc: 57.58  
GCCCCGTTCGTCTAGAGGCctA.GGACGCCGGCCTCTCACGCCGGTA...........ACACGGGTTCGAATCCCGTACGGGGTACAA chr.trna18-GluCTC Sc: 57.58  
GCCCCGTTCGTCTAGAGGCctA.GGACGCCGGCCTCTCACGCCGGTA...........ACACGGGTTCGAATCCCGTACGGGGTA... chr.trna19-GluCTC Sc: 56.96  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCTCCCATCGTCTAGGGGCctA.GGACACCGCCCTTTCACGGCGGCG...........ACACGGGTTCGAATCCCGTTGGGAGTACTA chr.trna33-GluTTC Sc: 56.87  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGATGTAGCGCAGTTGGT.A.GCGCATCACCTTGCCAAGGTGAGG...........GtCGCGAGTTCGAGTCTCGTCATCCGCT... chr.trna49-GlyGCC Sc: 86.03  
GCGGATGTAGCGCAGTTGGT.A.GCGCATCACCTTGCCAAGGTGAGG...........GtCGCGAGTTCGAGTCTCGTCATCCGCT... chr.trna47-GlyGCC Sc: 86.03  
GCGGATGTAGCGCAGTTGGT.A.GCGCATCACCTTGCCAAGGTGAGG...........GtCGCGAGTTCGAGTCTCGTCATCCGCT... chr.trna44-GlyGCC Sc: 86.03  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGTGTAGTTCAAT.GGT.A.GAACCCCTGCTTCCCAAGCAGGCG...........G.CGCGGGTTCGATTCCCGTCACCGGCTCCA chr.trna30-GlyCCC Sc: 86.66  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGAATGTCGTATAAT.GGCtA.TTACCTCAGCCTTCCAAGCTGATG...........A.CGCGGGTTCGATTCCCGTCATTCCCT... chr.trna40-GlyTCC Sc: 55.95  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTGTAGTTCAGCTGGTAGAGCACCAGGTTGTGATCCTGGGT...........GtCGCGGGTTCGAGCCCCGTCAGCCACCCCC chr.trna27-HisGTG Sc: 74.50  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTATAGCTCAGTCGGTtAGAGCGCATCGCTGATAACGATGAG...........GtCGCAAGTTCGATTCTTGCTAGGCCCACCA chr.trna1-IleGAT Sc: 96.92  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGCGGAAT.GGCaG.ACGCGCTAGCTTGAGGTGCTAGT.GTCCTATTA.....ACGGACG.TGGGGGTTCAAGTCCCCC.TCTGGGCA... chr.trna23-LeuGAG Sc: 59.73  
GCCCGGGTGGCGGAAT.GGCaG.ACGCGCTAGCTTGAGGTGCTAGT.GTCCTATTA.....ACGGACG.TGGGGGTTCAAGTCCCCC.CTCGGGCA... chr.trna22-LeuGAG Sc: 58.10  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGCGGAAT.GGCaG.ACGCGCTGGCTTCAGGTGCCAGT.GTCC..GCAA......GGGCG.TGGGGGTTCAAGTCCCCC.CCCGGGCACAA chr.trna3-LeuCAG Sc: 65.51  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCGCCTGTGGCGGAATTGGCaG.ACGCGCTGGATTTAGGTTCCAGT.GTCCC..........AGGACG.TGAGAGTTCAAGTCTCTC.CAGGCGCA... chr.trna39-LeuTAG Sc: 67.86  

>>>>>>>..>>>............<<<.>>>>.........<<<<.........................>>>>>.......<<<<<.<<<<<<<....
GCCCTAGTAGCCCAATTGGCaG.AGGCAACGGATTCAAAACCCGTCC....................AgTGTGGGTTCGAGTCCCAC.CTGGGGCACCA chr.trna51-LeuCAA Sc: 61.31  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.........................>>>>>.......<<<<<.<<<<<<<....
GCCCCCATAGCCCAATCGGCaG.AGGCGGTTGACTTAAAATCAATTC....................AgTGTGGGTTCGAGTCCCAC.TGGGGGCA... chr.trna16-LeuTAA Sc: 57.16  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTCATTAGCTCAATTGGTAGAGCATCTGACTCTTAATCAGAGG...........GtTCGGGGTTCGATTCCCTGATGACGCACCA chr.trna29-LysCTT Sc: 93.49  
GCGTCATTAGCTCAATTGGTAGAGCATCTGACTCTTAATCAGAGG...........GtTCGGGGTTCGATTCCCTGATGACGCA... chr.trna28-LysCTT Sc: 85.19  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCCTTTAGCTCAGTTGGTAGAGCTACGGACTTTTAATCCGCAG...........GtCCCGGGTTCGAGCCCCGGAGGGCCCACCA chr.trna32-LysTTT Sc: 89.17  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGTC.GGTtA.GAGCTACGGACTCATAATCCGTTG...........GtCGCGGGTTCGAGCCCCGCTGGCCCCA... chr.trna42-MetCAT Sc: 86.87  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCTcGGT.A.GCTCGCTGGGCTCATAACCCAGAG...........GtCGTAGGTTCGAATCCTGCCCCCGCTACTA chr.trna15-MetCAT Sc: 78.91  
CGCGGGGTGGAGCAGCTcGGT.A.GCTCGCTGGGCTCATAACCCAGAG...........GtCGTAGGTTCGAATCCTGCCCCCGCTACTA chr.trna14-MetCAT Sc: 78.91  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGTGTAGCTCAGT..GGT.A.GAGCAAGCGACTCATAATCGCTGT...........GtCGCGAGTTCAATTCTCGCCATCGCTA... chr.trna12-MetCAT Sc: 76.72  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCAGATAGCTCAGTCGGTAGAGCGTTCGCCTGAAAAGTGAAAG...........GtCGCCGGTTCGATCCCGGCTCTGGCCACAA chr.trna36-PheGAA Sc: 83.59  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGACTGTGGCGCAGCTtGGTAGCGCACTACACTGGGGGTGTAGGG...........GtCGCAGGTTCAAATCCTGTCAGTCCGACAA chr.trna50-ProGGG Sc: 74.42  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGATATGGCGCAGCTtGGTAGCGCGCCTCGTTCGGGACGAGGAG...........GtCGCAGGTTCAAATCCTGTTATCCCGACCA chr.trna55-ProCGG Sc: 89.76  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTGGCGCAGTTtGGTAGCGCACCTGCTTTGGGAGCAGGGG...........GtCGCAGGTTCAAATCCTGTCGCCCCGA... chr.trna41-ProTGG Sc: 87.11  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGGATTCGACTAGCGGCctA.TGTCGCTCGCCTGGAACGCGGGTTGGGA...GCAA...TCCCTCAGGGGTTCAAATCCCCT..ATCCTCCGCAA chr.trna56-SerGGA Sc: 53.42  

>>>>>>>...>>............<<..>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGTGGCGTGTCCGAGCGGCcgA.AGGTGATCGCCTCGAAAGCGATT.GTTGGG.TAATCCCCAAC.CGGGGGTTCAAATCCCCC..CGCCACCGCCA chr.trna8-SerCGA Sc: 63.18  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGACGTGACAGAGCGGCcgA.ATGTACTGGTCTTGAAAACCAGCGATGG...GAAA...CCATCCGAGGGTTCAAATCCCTC..CGTCTCCG... chr.trna4-SerTGA Sc: 57.34  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGACGTGCCAGAGCGGCcgA.ATGGGGCTCACTGCTAATGAGTT.GTCCTCTTAACGGAGGAC.CGGAGGTTCAAATCCTCT..CGTCTCCG... chr.trna5-SerGCT Sc: 55.16  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCCTTAGCTCAGTCGGCAGAGCGTTTCCATGGTAAGGAAAAG...........GtCAACAGTTCGATTCTGTTAGGGGGCTCAA chr.trna11-ThrGGT Sc: 75.66  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCTTTAGCTCAGTCGGTAGAGCGTCTCACTCGTAATGAGAAG...........GtCAGGAGTTCGATTCTCCTAAGCGGCTCCA chr.trna9-ThrCGT Sc: 92.70  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGAGTGGCGCAATCGGTAGCGCAACGCACTTGTAATGCGTAG...........GtTGCGAGTTCAAGTCTCGTCTCCAGCT... chr.trna31-ThrTGT Sc: 78.95  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGCGTAGCTCAATTGGCAGAGCAACGGTCTCCAAAACCGTAG...........GtTGCAGGTTCAAGTCCTGTCGCCCCTGCAA chr.trna13-TrpCCA Sc: 82.04  



Tyr tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.>>>.>......<.<<<...>>>>>.......<<<<<.<<<<<<<....
GCCAGATTGCCCGAGCGGCcaA.TGGGAGCGGACTGTAAATCCGTCGGCTT......GCGCCTaCGTAGGTTCGAATCCTAC.ATCTGGCA... chr.trna10-TyrGTA Sc: 51.67  



Val tRNAs



>>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<....
GCGCGTTTAGCTCAGC.GGGA.GAGCGCTTCCCTGACACGGAAGAG...........GtCACTGGTTCAATCCCAGTATCGCGCACCA chr.trna48-ValGAC Sc: 82.06  
GCGCGTTTAGCTCAGC.GGGA.GAGCGCTTCCCTGACACGGAAGAG...........GtCACTGGTTCAATCCCAGTATCGCGCACCA chr.trna46-ValGAC Sc: 82.06  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCTATGGCTCAGT.GGAA.GAGCGTTCCGTTCACACCGGAAAG...........GtCGCTGGTTCGAACCCAGCTAGGACCACAA chr.trna24-ValCAC Sc: 76.19  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCTTTAGCTCAGCTGGAA.GAGCAGCTGGTTTACACCCAGCAG...........GtCGGCGGTTCGAGCCCGTCAGGGCGCA... chr.trna43-ValTAC Sc: 80.45

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.