tRNAscan-SE Analysis of the Corynebacterium diphtheriae Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	11818	11894	Ile	GAT	0	0	96.92	71.74	25.18	Both
chr	2	11904	11976	Ala	TGC	0	0	87.27	66.51	20.76	Both
chr	3	19068	19144	Ile	GAT	0	0	96.92	71.74	25.18	Both
chr	4	19154	19226	Ala	TGC	0	0	87.27	66.51	20.76	Both
chr	5	20221	20293	Ala	TGC	0	0	87.27	66.51	20.76	Both
chr	6	53080	53166	Leu	CAG	0	0	69.20	41.67	27.53	Both
chr	7	150357	150441	Ser	TGA	0	0	59.53	20.86	38.67	Both
chr	8	151769	151857	Ser	GCT	0	0	53.90	17.49	36.41	Both
chr	9	151905	151980	Arg	ACG	0	0	79.49	60.96	18.53	Both
chr	10	154077	154152	Arg	ACG	0	0	79.49	60.96	18.53	Both
chr	11	190719	190791	Pseudo	ACG	0	0	20.62	24.95	-4.33	Eufind
chr	12	210284	210374	Ser	CGA	0	0	61.75	30.38	31.37	Eufind
chr	13	305408	305483	Thr	CGT	0	0	81.42	61.04	20.38	Both
chr	14	394779	394860	Tyr	GTA	0	0	51.27	19.95	31.32	Both
chr	15	395053	395125	Thr	GGT	0	0	75.88	48.31	27.57	Both
chr	16	395164	395238	Met	CAT	0	0	77.37	57.36	20.01	Both
chr	17	395264	395339	Trp	CCA	0	0	77.97	59.49	18.48	Both
chr	18	710975	711051	Met	CAT	0	0	78.91	56.23	22.68	Both
chr	19	882605	882676	Pseudo	TTG	0	0	44.71	9.70	35.01	Both
chr	20	895059	895135	Leu	TAA	0	0	67.32	46.72	20.60	Both
chr	21	1100709	1100780	Gln	CTG	0	0	50.52	19.87	30.65	Both
chr	22	1100814	1100889	Glu	CTC	0	0	54.83	35.79	19.04	Both
chr	23	1106131	1106206	Glu	CTC	0	0	54.83	35.79	19.04	Both
chr	24	1201374	1201450	Pro	GGG	0	0	76.20	51.45	24.75	Both
chr	25	1273184	1273272	Leu	GAG	0	0	56.56	37.77	18.79	Both
chr	26	1409946	1410021	Gly	GCC	0	0	86.65	62.05	24.60	Both
chr	27	1410036	1410110	Val	GAC	0	0	74.38	56.54	17.84	Both
chr	28	1410141	1410213	Gly	GCC	0	0	86.03	61.46	24.57	Both
chr	29	1410252	1410322	Cys	GCA	0	0	65.00	38.25	26.75	Both
chr	30	1410330	1410404	Val	GAC	0	0	74.38	56.54	17.84	Both
chr	31	1410435	1410510	Gly	GCC	0	0	86.65	62.05	24.60	Both
chr	32	1734940	1735013	Met	CAT	0	0	82.48	64.73	17.75	Both
chr	33	1863910	1863985	His	GTG	0	0	74.50	57.33	17.17	Both
chr	34	1866327	1866399	Lys	CTT	0	0	84.46	61.68	22.78	Both
chr	35	2209315	2209388	Gly	CCC	0	0	82.89	61.43	21.46	Both
chr	36	2012035	2011960	Thr	TGT	0	0	82.85	58.33	24.52	Both
chr	37	1950226	1950151	Lys	TTT	0	0	80.63	64.50	16.13	Both
chr	38	1944293	1944218	Glu	TTC	0	0	64.54	39.04	25.50	Both
chr	39	1944191	1944118	Asp	GTC	0	0	86.14	67.34	18.80	Both
chr	40	1942751	1942675	Asp	GTC	0	0	86.76	67.94	18.82	Both
chr	41	1942655	1942580	Phe	GAA	0	0	81.96	57.82	24.14	Both
chr	42	1923618	1923543	Ala	GGC	0	0	79.11	62.71	16.40	Both
chr	43	1894071	1893990	Leu	TAG	0	0	66.48	36.90	29.58	Both
chr	44	1861221	1861148	Arg	TCT	0	0	75.75	58.91	16.84	Both
chr	45	1842792	1842718	Gly	TCC	0	0	67.60	40.76	26.84	Both
chr	46	1842377	1842301	Pro	TGG	0	0	87.00	66.28	20.72	Both
chr	47	1734761	1734689	Asn	GTT	0	0	80.50	52.81	27.69	Both
chr	48	1722527	1722452	Val	TAC	0	0	80.78	61.75	19.03	Both
chr	49	1409657	1409586	Val	CAC	0	0	74.63	47.17	27.46	Both
chr	50	1129756	1129680	Leu	CAA	0	0	56.88	37.12	19.76	Both
chr	51	1008593	1008518	Arg	CCG	0	0	70.77	44.67	26.10	Both
chr	52	795612	795540	Arg	CCT	0	0	76.14	52.18	23.96	Both
chr	53	264753	264677	Pro	CGG	0	0	89.76	65.76	24.00	Both
chr	54	219222	219134	Ser	GGA	0	0	58.32	21.25	37.07	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.