tRNAscan-SE Analysis of the Corynebacterium diphtheriae Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATGGCGCAGCTGGTAGCGCATCACACTGGCAGTGTGGGG...........GtCACGGGTTCGAATCCCGTTAGCTCCACCG chr.trna42-AlaGGC Sc: 79.11  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCATTAGCTCAATTGGTAGAGCATCTGCTTTGCAAGCAGAAG...........GtCAGGAGTTCGATTCTCCTATGCTCCA... chr.trna5-AlaTGC Sc: 87.27  
GGGGCATTAGCTCAATTGGTAGAGCATCTGCTTTGCAAGCAGAAG...........GtCAGGAGTTCGATTCTCCTATGCTCCA... chr.trna4-AlaTGC Sc: 87.27  
GGGGCATTAGCTCAATTGGTAGAGCATCTGCTTTGCAAGCAGAAG...........GtCAGGAGTTCGATTCTCCTATGCTCCA... chr.trna2-AlaTGC Sc: 87.27  



Arg tRNAs


>>>>>>>..>>>>...............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAAC..GGAt.A....GAGCATCTGACTACGGATCAGAAG...........GtTGGGGGTTCGAATCCCTCCGGGCGCACAA chr.trna9-ArgACG Sc: 79.49  
GCGCCCGTAGCTCAAC..GGAt.A....GAGCATCTGACTACGGATCAGAAG...........GtTGGGGGTTCGAATCCCTCCGGGCGCACAA chr.trna10-ArgACG Sc: 79.49  
>>.>..>....>.................<...>>>>>.......<<<<<................>>>>>.......<<<<<<..<.<<....
GCACAGGTAGAGCAGAAt..........TCGAATCTGACTACGGATCAGAAG...........GtTGGGGGTTCGAATCCCTCCGGGCGCACAA chr.trna11-ArgACG Sc: 20.62  Pseudo


>>>>>>>..>>>>...............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCTCCGTAGCTCAGT..GGAt.A....GAGCATTGGTTTCCGGTACCAAAG...........GtCGCAAGTTCGAATCTTGTCGGGGACACAA chr.trna51-ArgCCG Sc: 70.77  


>>>>>>>..>>>>...............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCTAGTAGCTCAGT..GGAt.A....GAGCACGGCTCTCCTAAAGCCGGT...........GtCGGAGGTTCGATTCCTCTCTGGGGCA... chr.trna52-ArgCCT Sc: 76.14  

>>>>>>>..>>>>...............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTCCATAGCTCAGT..GGAttA....GAGCAGTCGGCTTCTACCCGATTG...........GtCGCGGGTTCGAATCCTGCTGGGGGCA... chr.trna44-ArgTCT Sc: 75.75  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCCCATAGCTCAATTGGCAGAGCATTCGACTGTTAATCGAAGG...........GtTACTGGTTCGAGTCCAGTTGGGGGAG... chr.trna47-AsnGTT Sc: 80.50  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCTGTGGCGCAGTTGGTtAGCGCGCCGCCCTGTCACGGCGGAG...........GtCGCGGGTTCAAGTCCCGTCAGGGTCGCAA chr.trna40-AspGTC Sc: 86.76  
GGCCCTGTGGCGCAGTTGGTtAGCGCGCCGCCCTGTCACGGCGGAG...........GtCGCGGGTTCAAGTCCCGTCAGGGTCG... chr.trna39-AspGTC Sc: 86.14  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTGGAATGGCCGAGTGGTG.AGGCAACGGTCTGCAAAACCGTGC...........ACACGGGTTCGATTCCCGTTTCCACCT... chr.trna29-CysGCA Sc: 65.00  



Gln tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
TGGCCTATGGTGTAATTGGCAACACTACGGTTTCTGGTACCGTC...........AtTCTAGGTTCGAGTCCTGG.TAGGCCAG... chr.trna21-GlnCTG Sc: 50.52  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
TTCCCCATGGTGTAATCGGCAACACTACGGTTTTTGGTACCGTC...........AtTCTAGGTTCGAGTCCTGG.TGGGGAAG... chr.trna19-GlnTTG Sc: 44.71  Pseudo



Glu tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCCCGTTCGTCTAGCGGCctA.GGACGTCGGCCTCTCACGCCGGTA...........ACACGGGTTCAAATCCCGTACGGGGTACAA chr.trna23-GluCTC Sc: 54.83  
GCCCCGTTCGTCTAGCGGCctA.GGACGTCGGCCTCTCACGCCGGTA...........ACACGGGTTCAAATCCCGTACGGGGTACAA chr.trna22-GluCTC Sc: 54.83  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCTCCCATCGTCTAGGGGCctA.GGACACCGCCCTTTCACGGCGGCG...........ACACGGGTTCGAATCCCGTTGGGAGTACCA chr.trna38-GluTTC Sc: 64.54  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGATGTAGCGCAGTTGGT.A.GCGCATCACCTTGCCAAGGTGAGG...........GtCGCGAGTTCGAGTCTCGTCATCCGCTCAA chr.trna31-GlyGCC Sc: 86.65  
GCGGATGTAGCGCAGTTGGT.A.GCGCATCACCTTGCCAAGGTGAGG...........GtCGCGAGTTCGAGTCTCGTCATCCGCTCAA chr.trna26-GlyGCC Sc: 86.65  
GCGGATGTAGCGCAGTTGGT.A.GCGCATCACCTTGCCAAGGTGAGG...........GtCGCGAGTTCGAGTCTCGTCATCCGCT... chr.trna28-GlyGCC Sc: 86.03  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGATGTAGTTCAAT.GGT.A.GAACATCAGCTTCCCAAGCTGAAT...........A.CGCGGGTTCGATTCCCGTCATCGGCTCCA chr.trna35-GlyCCC Sc: 82.89  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGAATGTCGTATAGT.GGCtA.ATACCTCAGCCTTCCAAGCTGAAG...........A.CGCGGGTTCGATTCCCGTCATTCCCTCCA chr.trna45-GlyTCC Sc: 67.60  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTGTAGTTCAGCTGGTAGAGCACCAGGTTGTGATCCTGGGT...........GtCGCGGGTTCGAGCCCCGTCAGCCACCCCG chr.trna33-HisGTG Sc: 74.50  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTATAGCTCAGTCGGTtAGAGCGCATCGCTGATAACGATGAG...........GtCGCAAGTTCGATTCTTGCTAGGCCCACCA chr.trna3-IleGAT Sc: 96.92  
GGGCCTATAGCTCAGTCGGTtAGAGCGCATCGCTGATAACGATGAG...........GtCGCAAGTTCGATTCTTGCTAGGCCCACCA chr.trna1-IleGAT Sc: 96.92  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGCGGAAT.GGCaG.ACGCGCTAGCTTGAGGTGCTAGT.GTCCTACTAa.....CGGACG.TGGGGGTTCAAGTCCCCC.CTCGGGCACAA chr.trna25-LeuGAG Sc: 56.56  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGCGGAATTGGCaG.ACGCGCTGGCTTCAGGTGCCAGT.GTTC.GCAA.......GGACG.TGGGGGTTCAAGTCCCCC.CCTGGGCACAA chr.trna6-LeuCAG Sc: 69.20  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..............<<<...>>>>>.......<<<<<.<<<<<<<....
GCGCCCGTGGCGGAATTGGCaG.ACGCGCTGGATTTAGGTTCCAGT.GTC..TTAG........GACG.TGAGAGTTCAAGTCTCTC.CGGGCGCA... chr.trna43-LeuTAG Sc: 66.48  

>>>>>>>..>>>............<<<.>>>>.........<<<<.........................>>>>>.......<<<<<.<<<<<<<....
GCCCCTGTATCCCAATTGGCaG.AGGAAACGGATTCAAAACCCGTGC....................AgTGTGAGTTCGAGTCTCAC.CAGGGGCACCA chr.trna50-LeuCAA Sc: 56.88  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.........................>>>>>.......<<<<<.<<<<<<<....
GCCCCCATAGCCCAATCGGCaG.AGGCAATCGACTTAAAATCGATTC....................AgTGTGGGTTCGAGTCCCAC.TGGGGGCACCA chr.trna20-LeuTAA Sc: 67.32  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCATTAGCTCAATTGGCAGAGCAACTGACTCTTAATCAGTGG...........GtTCGGGGTTCAAGTCCCTGATGGCGCA... chr.trna34-LysCTT Sc: 84.46  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCCTTTAGCTCAGCTGGTAGAGCTACGGACTTTTAATCCGCAG...........GtCCCGGGTTCGAGCCCCGGAGGGCCCACAA chr.trna37-LysTTT Sc: 80.63  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGTC.GGTtA.GAGCCGCGGACTCATAATCCGTTG...........GtCCCGGGTTCGAGCCCCGGTGGCCCCA... chr.trna32-MetCAT Sc: 82.48  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCTcGGT.A.GCTCGCTGGGCTCATAACCCAGAG...........GtCGTAGGTTCGAATCCTGCCCCCGCTACTA chr.trna18-MetCAT Sc: 78.91  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGTGTAGCTCAGT..GGT.A.GAGCAAACGACTCATAATCGTTGT...........GtCGAGAGTTCAATTCTCTCCATCGCTACTA chr.trna16-MetCAT Sc: 77.37  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCAGATAGCTCAGTCGGTAGAGCACACGCCTGAAAAGTGTGGG...........GtCGCCAGTTCGATCCTGGCTCTGGCCACAA chr.trna41-PheGAA Sc: 81.96  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGACTATGGCGCAGCTtGGTAGCGCACTTGACTGGGGGTCAAGGG...........GtCGCAGGTTCAAATCCTGTTAGTCCGACAA chr.trna24-ProGGG Sc: 76.20  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGATATGGCGCAGCTtGGTAGCGCGCCTCGTTCGGGACGAGGAG...........GtCGCAGGTTCAAATCCTGTTATCCCGACCA chr.trna53-ProCGG Sc: 89.76  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGACGTGGCGCAGTTtGGTAGCGCACCTGCTTTGGGAGCAGGGG...........GtCGCAGGTTCAAATCCTGTCGTCCCGACAA chr.trna46-ProTGG Sc: 87.00  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>.........<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGGATTCGACTAGCGGCctA.TGTCACACGCCTGGAACGCGTGCGGGTT..TCAC...GACCCtCGTGGGTTCAAATCCCAC..ATCCTCCGCAA chr.trna54-SerGGA Sc: 58.32  

>>>>>>>...>>............<<..>>>>>.......<<<<<..>>>>>>.....<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGTAGCGTGTCCGAGCGGCcgA.AGGTGTTCGCCTCGAAAGCGAAT.GTTGGGTAACCCCCAAC..CGCGGGTTCAAATCCCGC..CGCTACCGCCA chr.trna12-SerCGA Sc: 61.75  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>.........<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGATGTGGCAGAGCGGCcgA.ATGCACTGGTCTTGAAAACCAGCGATGG..GAAA...CCATC.CCAGGGTTCAAATCCCTG..CGTCTCCG... chr.trna7-SerTGA Sc: 59.53  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.....<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGACGTGCCAGAGCGGCcgA.ATGGGGCTCCCTGCTAAGGAGTTGACTTGTTTGC.GCAGGTC.CGGAGGTTCAAATCCTCT..CGTCTCCG... chr.trna8-SerGCT Sc: 53.90  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCCTTAGCTCAGTCGGCAGAGCGTTTCCATGGTAAGGAAAAG...........GtCGACAGTTCGATTCTGTCAGGGGGCT... chr.trna15-ThrGGT Sc: 75.88  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGCCTTAGCTCAGTCGGTAGAGCGCTTCACTCGTAATGAAAAG...........GtCGCGAGTTCGATTCTCGCAGGCGGCTCAA chr.trna13-ThrCGT Sc: 81.42  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGAGTGGCGCAATTGGTAGCGCAACGCACTTGTAATGCGTAG...........GtTGTGGGTTCAAGTCCCATCTCCAGCTCAA chr.trna36-ThrTGT Sc: 82.85  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGCGTAGTTCAATTGGTAGAGCAACGGTCTCCAAAACCGTAG...........GtTGCAGGTTCAAGTCCTGTCGCCCCTGCAA chr.trna17-TrpCCA Sc: 77.97  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>........<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCAGGTTGCCCGAGCGGCcaA.AGGGAGCGGACTGTAAATCCGTCGGCA.......tTGCCTaCAGAAGTTCGAATCTTCT.ACCTGGCA... chr.trna14-TyrGTA Sc: 51.27  



Val tRNAs



>>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<....
GCGCGTTTAGCTCAGC.GGGA.GAGCGCTTCCCTGACACGGAAGAG...........GtCACTGGTTCAATCCCAGTATCGCGCACAA chr.trna30-ValGAC Sc: 74.38  
GCGCGTTTAGCTCAGC.GGGA.GAGCGCTTCCCTGACACGGAAGAG...........GtCACTGGTTCAATCCCAGTATCGCGCACAA chr.trna27-ValGAC Sc: 74.38  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCTATGGCTCAGT.GGAA.GAGCGTTCCGTTCACACCGGAAAG...........GtCGCTGGTTCGATCCCAGCTAGGACCA... chr.trna49-ValCAC Sc: 74.63  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCTTTAGCTCAGCTGGGA.GAGCAGCTGGTTTACACCCAGCAG...........GtCGGCGGTTCGATCCCGTCAGGGCGCACAA chr.trna48-ValTAC Sc: 80.78

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.