tRNAscan-SE Analysis of the Clostridium tetani E88 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	47	38326	38251	View	Ala	TGC	0	0	90.91	74.84	16.07	Both
chr	17	566657	566732	View	Ala	TGC	0	0	93.93	78.10	15.83	Both
chr	26	2793741	2793666	View	Ala	TGC	0	0	93.93	78.10	15.83	Both

chr	50	28295	28219	View	Arg	ACG	0	0	81.94	65.94	16.00	Both

chr	51	26259	26183	View	Arg	CCT	0	0	78.82	58.40	20.42	Both

chr	40	2523461	2523385	View	Arg	TCG	0	0	81.89	67.64	14.25	Both

chr	32	2524175	2524099	View	Arg	TCT	0	0	86.55	65.70	20.85	Both

chr	10	172150	172224	View	Asn	GTT	0	0	83.05	55.26	27.79	Both
chr	19	570186	570260	View	Asn	GTT	0	0	83.05	55.26	27.79	Both
chr	28	2788520	2788446	View	Asn	GTT	0	0	83.05	55.26	27.79	Both

chr	3	82507	82584	View	Asp	GTC	0	0	91.34	74.40	16.94	Both

chr	43	2414867	2414793	View	Cys	GCA	0	0	72.76	39.60	33.16	Both
chr	12	182817	182891	View	Cys	GCA	0	0	78.45	50.68	27.77	Both

chr	45	326445	326370	View	Gln	CTG	0	0	68.64	44.73	23.91	Both

chr	35	2523922	2523848	View	Gln	TTG	0	0	72.14	47.68	24.46	Both

chr	20	713286	713360	View	Glu	CTC	0	0	69.40	35.92	33.48	Both

chr	1	82338	82412	View	Glu	TTC	0	0	75.70	51.53	24.17	Both

chr	38	2523642	2523568	View	Gly	GCC	0	0	84.37	65.93	18.44	Both
chr	42	2414948	2414874	View	Gly	GCC	0	0	84.37	65.93	18.44	Both

chr	31	2524253	2524180	View	Gly	TCC	0	0	77.14	56.71	20.43	Both
chr	39	2523556	2523483	View	Gly	TCC	0	0	77.14	56.71	20.43	Both

chr	34	2524007	2523932	View	His	GTG	0	0	74.72	54.78	19.94	Both

chr	18	566743	566819	View	Ile	GAT	0	0	98.32	74.38	23.94	Both
chr	24	2797231	2797155	View	Ile	GAT	0	0	98.32	74.38	23.94	Both
chr	27	2791914	2791838	View	Ile	GAT	0	0	98.32	74.38	23.94	Both

chr	22	2243062	2243150	View	Leu	CAA	0	0	73.63	48.21	25.42	Both

chr	44	2236411	2236326	View	Leu	GAG	0	0	58.71	35.95	22.76	Eufind

chr	5	159533	159623	View	Leu	TAA	0	0	76.91	47.76	29.15	Both
chr	8	159813	159903	View	Leu	TAA	0	0	76.91	47.76	29.15	Both

chr	37	2523745	2523662	View	Leu	TAG	0	0	73.77	49.79	23.98	Both

chr	33	2524094	2524019	View	Lys	CTT	0	0	91.25	70.18	21.07	Both

chr	36	2523844	2523769	View	Lys	TTT	0	0	86.50	54.02	32.48	Both
chr	54	5324	5249	View	Lys	TTT	0	0	86.50	54.02	32.48	Both

chr	6	159635	159710	View	Met	CAT	0	0	84.32	62.82	21.50	Both
chr	9	159915	159990	View	Met	CAT	0	0	84.32	62.82	21.50	Both
chr	7	159731	159807	View	Met	CAT	0	0	88.08	65.93	22.15	Both
chr	25	2793824	2793748	View	Met	CAT	0	0	94.88	73.35	21.53	Both
chr	46	38408	38332	View	Met	CAT	0	0	94.88	73.35	21.53	Both

chr	11	181014	181089	View	Phe	GAA	0	0	85.71	63.26	22.45	Both
chr	41	2415029	2414954	View	Phe	GAA	0	0	85.71	63.26	22.45	Both

chr	21	1206667	1206742	View	Pro	GGG	0	0	75.93	52.00	23.93	Both

chr	30	2524339	2524264	View	Pro	TGG	0	0	82.05	61.37	20.68	Both

chr	52	25606	25515	View	Ser	CGA	0	0	56.78	24.79	31.99	Eufind

chr	49	28435	28345	View	Ser	GCT	0	0	66.57	27.46	39.11	Both

chr	53	24292	24203	View	Ser	GGA	0	0	71.33	34.53	36.80	Both

chr	48	28553	28463	View	Ser	TGA	0	0	77.44	47.41	30.03	Both

chr	29	2765679	2765604	View	Thr	GGT	0	0	86.12	63.66	22.46	Both

chr	13	302847	302922	View	Thr	TGT	0	0	88.90	65.56	23.34	Both
chr	15	303065	303140	View	Thr	TGT	0	0	88.90	65.56	23.34	Both
chr	4	82592	82667	View	Thr	TGT	0	0	88.90	65.56	23.34	Both

chr	23	2577708	2577783	View	Trp	CCA	0	0	72.06	56.55	15.51	Both

chr	14	302928	303013	View	Tyr	GTA	0	0	66.49	38.70	27.79	Both
chr	16	303146	303231	View	Tyr	GTA	0	0	66.49	38.70	27.79	Both

chr	2	82424	82499	View	Val	TAC	0	0	95.51	79.98	15.53	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.