tRNAscan-SE Analysis of the Clostridium tetani E88 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGTATAGCTCAGTTGGGAGAGCACCTGCCTTGCAAGCAGGGG...........GtCAGGAGTTCGAATCTCCTTATCTCCACCA chr.trna26-AlaTGC Sc: 93.93  
GGGGGTATAGCTCAGTTGGGAGAGCACCTGCCTTGCAAGCAGGGG...........GtCAGGAGTTCGAATCTCCTTATCTCCACCA chr.trna17-AlaTGC Sc: 93.93  
GGGGGTATAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGG...........GtCAAGAGTTCGAATCTCTTTATCTCCACCA chr.trna47-AlaTGC Sc: 90.91  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCGGTAGCTCAGTTGGAtAGAGTAGCTGGCTACGAACCAGTTG...........GtCGGGGGTTCGAATCCTCTCCGGTGTACCA chr.trna50-ArgACG Sc: 81.94  



>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGCCCATAGCTCAGCTGGAtAGAGTTACGGACTTCGAATCCGGAG...........GtCACAGGTTCGACTCCTGTTGGGCGCACCA chr.trna40-ArgTCG Sc: 81.89  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCTCGTAGCTCAGTTGGAtAGAGCAGTGGTTTCCTAAACCACGT...........GcCAGGGGTTCAATTCCTCTCGGGCGCACCA chr.trna51-ArgCCT Sc: 78.82  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTCTTTAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTGT...........GcCAGGGGTTCGACTCCCTTAAGACGCACCA chr.trna32-ArgTCT Sc: 86.55  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCGTGGTAGCTCAATGGTG.GAGCATTCGGCTGTTAACCGAAGG...........GtTGAAGGTTCGAATCCTTTCCACGGAGCCA chr.trna28-AsnGTT Sc: 83.05  
TCCGTGGTAGCTCAATGGTG.GAGCATTCGGCTGTTAACCGAAGG...........GtTGAAGGTTCGAATCCTTTCCACGGAGCCA chr.trna19-AsnGTT Sc: 83.05  
TCCGTGGTAGCTCAATGGTG.GAGCATTCGGCTGTTAACCGAAGG...........GtTGAAGGTTCGAATCCTTTCCACGGAGCCA chr.trna10-AsnGTT Sc: 83.05  



Asp tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCAGTGGCTCAGTTGGTttAGAGTGCCGGCCTGTCACGCCGGAG...........GtCGAGGGTTCGAGTCCCTTCTGGGTCGCCA chr.trna3-AspGTC Sc: 91.34  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGCTATAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTCTA...........TtCCCCGGTTCAAATCCGGGTGGCGCCTCCA chr.trna12-CysGCA Sc: 78.45  
GGCACTATAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTCTA...........TtCCCCAGTTCAAATCTGGGTGGTGCCTCCA chr.trna43-CysGCA Sc: 72.76  



Gln tRNAs


>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...................>>>>>.......<<<<<.<<<<<<<....
TGCCCATTAGCCAAATGGTA.AGGCACCTGTCTCTGGAACAGGC.ACT...........G.TGCTGGTTCGAATCCAGC.ATGGGCAGCCA chr.trna45-GlnCTG Sc: 68.64  

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...................>>>>>.......<<<<<.<<<<<<<....
TGGGATGTCGCCAAGTGGTA.AGGCACGGGACTTTGACTTCCGCA..............TtCGTAGGTTCGAATCCTGC.CATCCCAGCCA chr.trna35-GlnTTG Sc: 72.14  



Glu tRNAs


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GGTCTCTTGGTCAAGTGGTtA.AGACGCCACCCTCTCAAGGTGGA............AtCGGGAGTTCGATCCTCCT.AGAGACTGCCA chr.trna20-GluCTC Sc: 69.40  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GGCCCCTTGGTCAAGTGGTtA.AGACACCACCCTTTCACGGTGGTA...........A.CATGGGTTCGAATCCCGT.AGGGGTCACCA chr.trna1-GluTTC Sc: 75.70  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTGGCTCAGTGGTA.GAGCGTCACCTTGCCAAGGTGAAC...........GtCGTGGGTTCGAATCCCATCTTCCGCTCCA chr.trna42-GlyGCC Sc: 84.37  
GCGGGAGTGGCTCAGTGGTA.GAGCGTCACCTTGCCAAGGTGAAC...........GtCGTGGGTTCGAATCCCATCTTCCGCTCCA chr.trna38-GlyGCC Sc: 84.37  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAATGGTA.GAGTTCCAGCCTTCCAAGCTGGCT...........G.TGAGAGTTCGATTCTCTTCACCCGCTCCA chr.trna39-GlyTCC Sc: 77.14  
GCGGGTGTAGCTCAATGGTA.GAGTTCCAGCCTTCCAAGCTGGCT...........G.TGAGAGTTCGATTCTCTTCACCCGCTCCA chr.trna31-GlyTCC Sc: 77.14  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGGTATAGCTCAGGTGGTAGAGCGCCAGATTGTGGTTCTGGAT...........GcCAAGGGTTCGAGTCCCTTTATCCACCCCA chr.trna34-HisGTG Sc: 74.72  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTTAAGCCCACCA chr.trna27-IleGAT Sc: 98.32  
GGGCTTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTTAAGCCCACCA chr.trna24-IleGAT Sc: 98.32  
GGGCTTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTTAAGCCCACCA chr.trna18-IleGAT Sc: 98.32  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<..>.>>>.......<<<.<.<<<<<<<....
GCAGGTGTGCTGGAATTGGCaGACAGGCACGCTTGAGGTGCGTGT.GTTC...AAC.....GAACGTATGGGTTCAAGTCCCTT.CACCTGCACCA chr.trna44-LeuGAG Sc: 58.71  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<..>>>>>.......<<<<<.<<<<<<<....
GCAGGTGTGGCGGAATTGGCaGACGCACTAGACTTAGGATCTAGC.GCC....TTT......GGCGTGGGGGTTCGACTCCCTT.CACCTGCACCA chr.trna37-LeuTAG Sc: 73.77  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>.......<<<.....>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGTGGAACTGGCaGACGCGCTGGATTCAAAATCCAGTG...GGGCTTAAaCCTC...GTGCGGGTTCGATTCCCGC.CTTCGGCACCA chr.trna22-LeuCAA Sc: 73.63  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGC.GGTGTT.TTGA..AGCACCGTACCGGTTCGATTCCGGT.CTTCGGCACCA chr.trna8-LeuTAA Sc: 76.91  
GCCGAAGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGC.GGTGTT.TTGA..AGCACCGTACCGGTTCGATTCCGGT.CTTCGGCACCA chr.trna5-LeuTAA Sc: 76.91  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGCCATTAGCTCAGTTGGTAGAGCACCTGACTCTTAATCAGGGT...........GtCCAGGGTTCGACTCCCTGATGGCGCACCA chr.trna33-LysCTT Sc: 91.25  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GATCCACTAGCTCAGTCGGTAGAGCACATGACTTTTAATCATGGT...........GtCCGGGGTTCGATTCCCCGGTGGATCACCA chr.trna54-LysTTT Sc: 86.50  
GATCCACTAGCTCAGTCGGTAGAGCACATGACTTTTAATCATGGT...........GtCCGGGGTTCGATTCCCCGGTGGATCACCA chr.trna36-LysTTT Sc: 86.50  



Met tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGATCTTTAGCTCAGCTGGTtAGAGCAACCGGCTCATAACCGGTAG...........GtCCGGGGTTCGAGTCCCTGAAGGTCCACCA chr.trna46-MetCAT Sc: 94.88  
GGATCTTTAGCTCAGCTGGTtAGAGCAACCGGCTCATAACCGGTAG...........GtCCGGGGTTCGAGTCCCTGAAGGTCCACCA chr.trna25-MetCAT Sc: 94.88  
GGCGGAATAGCTCAGCTGGCtAGAGCATTCGGTTCATACCCGAAGT...........GtCGTAGGTTCAAGTCCTATTTCCGCTACCA chr.trna7-MetCAT Sc: 88.08  
.>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCTGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAGTCCTACCTCCGCAACCA chr.trna9-MetCAT Sc: 84.32  
CGCGGGGTGGAGCAGCTGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAGTCCTACCTCCGCAACCA chr.trna6-MetCAT Sc: 84.32  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<....
GGCTCGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGT...........GtCCCTGGTTCGATTCCTGGTCGAGCCACCA chr.trna41-PheGAA Sc: 85.71  
GGCTCGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGT...........GtCCCTGGTTCGATTCCTGGTCGAGCCACCA chr.trna11-PheGAA Sc: 85.71  



Pro tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CTGGGTATAGCGCAGATGGTAGCGCGCATGCATGGGGTGCATGAG...........GtCGCAGGTTCAAGTCCTGTTACTCAGACCA chr.trna21-ProGGG Sc: 75.93  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTGGCGCAGATGGGAGCGCGCGTGGTTTGGGACCATGAG...........GtCGCAGGTTCAAGCCCTGTCACCCCGACCA chr.trna30-ProTGG Sc: 82.05  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGTCCGAGA.GGTtgA.AGGAGCACGCCTGGAAAGCGTGT.GTAGGG.GCAA.CTCTACCGAGGGTTCGAATCCCTC..TCTCTCCGCCA chr.trna53-SerGGA Sc: 71.33  

>>>>>>>...>>.............<<..>>>>>.......<<<<<..>>>>>>>....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGTCCGAGA.GGTcgA.AGGTGGTGGTCTCGAAAACCATT.ATACAGTAACAACTGTATCGAGGGTTCAAATCCCTC..TCTCTCCGCCA chr.trna52-SerCGA Sc: 56.78  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAAAGATGGTCGAGTTGGTttA.AGGCACCGGTCTTGAAAACCGGC.GTACGG.GTGA.CCGTACCGTGGGTTCGAATCCCAC..TCTTTCCGCCA chr.trna48-SerTGA Sc: 77.44  


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>>......<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAAATACTCAAGA.GGTcgA.AGAGGCGCCCCTGCTAAGGGCGTAGGTCGG.GTAA.CCGGCACGAGGGTTCAAATCCCTC..TTTCTCCGCCA chr.trna49-SerGCT Sc: 66.57  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCATGTAGCTCAGTAGGTAGAGTGCCACCTTGGTAAGGTGGAG...........GtCACCGGTTCAATCCCGGTCATGGGCTCCA chr.trna29-ThrGGT Sc: 86.12  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGCATGGCTCAATTGGCAGAGCAGCTGACTTGTAATCAGCAG...........GtTGTAGGTTCAAGTCCTATTGCCAGCTCCA chr.trna4-ThrTGT Sc: 88.90  
GCTGGCATGGCTCAATTGGCAGAGCAGCTGACTTGTAATCAGCAG...........GtTGTAGGTTCAAGTCCTATTGCCAGCTCCA chr.trna15-ThrTGT Sc: 88.90  
GCTGGCATGGCTCAATTGGCAGAGCAGCTGACTTGTAATCAGCAG...........GtTGTAGGTTCAAGTCCTATTGCCAGCTCCA chr.trna13-ThrTGT Sc: 88.90  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
AGGGGTATAGCTCAATTGGTAGAGTAGCGGTCTCCAAAACCGTTG...........GtTCCGGGTTCAAGTCCTCGTGCCCCTGCCA chr.trna23-TrpCCA Sc: 72.06  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGAGTTCCCGAGTGGCcaA.AGGGGGCAGACTGTAAATCTGTTGGCTTTC....GCCTtCGATGGTTCGAATCCGTC.CTCCTCCACCA chr.trna16-TyrGTA Sc: 66.49  
GGAGGAGTTCCCGAGTGGCcaA.AGGGGGCAGACTGTAAATCTGTTGGCTTTC....GCCTtCGATGGTTCGAATCCGTC.CTCCTCCACCA chr.trna14-TyrGTA Sc: 66.49  



Val tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGCATAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCACAGGTTCGAGCCCTGTTGTGCCCACCA chr.trna2-ValTAC Sc: 95.51

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.