tRNAscan-SE Analysis of the Clostridium perfringens Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNA Gene Summary



tRNAs Decoding Standard 20 AA 95
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 0
 Predicted pseudogenes 0
 Total tRNAs 96
 
 
Intron Summary tRNAs with introns 
 0

Four Box tRNA Sets Isotype Anticodon Count Total
 Ala AGC 
   GGC 
   CGC 
   TGC 
 6 6
 Gly ACC 
   GCC 
 4 CCC 
   TCC 
 7 11
 Pro AGG 
   GGG 
   CGG 
   TGG 
 2 2
 Thr AGT 
   GGT 
 1 CGT 
   TGT 
 4 5
 Val AAC 
   GAC 
   CAC 
   TAC 
 4 4  Six Box tRNA Sets Isotype Anticodon Count Total
 Ser AGA 
   GGA 
 1 CGA 
   TGA 
 2 ACT 
   GCT 
 3   
     
   6
 Arg ACG 
 1 GCG 
   CCG 
   TCG 
 1   
     
   CCT 
 1 TCT 
 3 6
 Leu AAG 
   GAG 
 1 CAG 
   TAG 
 3   
     
   CAA 
 1 TAA 
 4 9
 Two Box tRNA Sets Isotype Anticodon Count Total
 Phe AAA 
   GAA 
 4   
     
   4
 Asn ATT 
   GTT 
 4   
     
   4
 Lys   
     
   CTT 
 2 TTT 
 7 9
 Asp ATC 
   GTC 
 3   
     
   3
 Glu   
     
   CTC 
   TTC 
 3 3
 His ATG 
   GTG 
 2   
     
   2
 Gln   
     
   CTG 
   TTG 
 2 2  Two Box & Other tRNA Sets Isotype Anticodon Count Total
 Ile AAT 
   GAT 
 4   
   TAT 
   4
 Met   
     
   CAT 
 8   
   8
 Tyr ATA 
   GTA 
 3   
     
   3
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 2   
     
   2
 Trp   
     
   CCA 
 2   
   2
 SelCys   
     
     
   TCA 
 1 1

tRNAs Decoding Standard 20 AA	95
Selenocysteine tRNAs (TCA)	1
Possible suppressor tRNAs (CTA,TTA)	0
tRNAs with undetermined or unknown isotypes	0
Predicted pseudogenes	0
Total tRNAs	96

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.