tRNAscan-SE Analysis of the Clostridium perfringens Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	11	77685	77760	View	Ala	TGC	0	0	96.00	76.94	19.06	Both
chr	15	340725	340800	View	Ala	TGC	0	0	96.00	76.94	19.06	Both
chr	2	15074	15149	View	Ala	TGC	0	0	96.00	76.94	19.06	Both
chr	40	2809943	2809868	View	Ala	TGC	0	0	96.00	76.94	19.06	Both
chr	73	2577772	2577697	View	Ala	TGC	0	0	96.00	76.94	19.06	Both
chr	76	2567666	2567591	View	Ala	TGC	0	0	96.00	76.94	19.06	Both

chr	7	39798	39874	View	Arg	ACG	0	0	77.37	64.68	12.69	Both

chr	8	42972	43046	View	Arg	CCT	0	0	66.52	39.03	27.49	Both

chr	72	2584203	2584127	View	Arg	TCG	0	0	83.74	66.83	16.91	Both

chr	51	2666694	2666618	View	Arg	TCT	0	0	90.12	69.05	21.07	Both
chr	57	2585559	2585483	View	Arg	TCT	0	0	90.12	69.05	21.07	Both
chr	65	2584840	2584764	View	Arg	TCT	0	0	90.12	69.05	21.07	Both

chr	42	2806608	2806534	View	Asn	GTT	0	0	74.68	52.80	21.88	Both
chr	13	110855	110929	View	Asn	GTT	0	0	80.06	58.89	21.17	Both
chr	39	2820711	2820637	View	Asn	GTT	0	0	80.06	58.89	21.17	Both
chr	78	2564450	2564376	View	Asn	GTT	0	0	80.06	58.89	21.17	Both

chr	24	2990923	2990847	View	Asp	GTC	0	0	90.15	71.89	18.26	Both
chr	27	2990668	2990592	View	Asp	GTC	0	0	90.15	71.89	18.26	Both
chr	30	2990418	2990342	View	Asp	GTC	0	0	90.15	71.89	18.26	Both

chr	44	2805256	2805182	View	Cys	GCA	0	0	77.74	52.16	25.58	Both
chr	92	2180757	2180683	View	Cys	GCA	0	0	77.74	52.16	25.58	Both

chr	59	2585399	2585325	View	Gln	TTG	0	0	79.26	53.20	26.06	Both
chr	67	2584678	2584604	View	Gln	TTG	0	0	79.26	53.20	26.06	Both

chr	19	740621	740695	View	Glu	TTC	0	0	75.64	49.43	26.21	Both
chr	25	2990839	2990765	View	Glu	TTC	0	0	75.64	49.43	26.21	Both
chr	28	2990586	2990512	View	Glu	TTC	0	0	75.64	49.43	26.21	Both

chr	90	2180914	2180840	View	Gly	GCC	0	0	75.38	51.16	24.22	Both
chr	48	2670124	2670050	View	Gly	GCC	0	0	78.19	56.74	21.45	Both
chr	63	2585027	2584953	View	Gly	GCC	0	0	78.19	56.74	21.45	Both
chr	70	2584403	2584329	View	Gly	GCC	0	0	78.19	56.74	21.45	Both

chr	47	2670215	2670142	View	Gly	TCC	0	0	81.55	61.54	20.01	Both
chr	49	2670044	2669971	View	Gly	TCC	0	0	81.55	61.54	20.01	Both
chr	53	2666476	2666403	View	Gly	TCC	0	0	81.55	61.54	20.01	Both
chr	56	2585712	2585639	View	Gly	TCC	0	0	81.55	61.54	20.01	Both
chr	64	2584949	2584876	View	Gly	TCC	0	0	81.55	61.54	20.01	Both
chr	71	2584325	2584252	View	Gly	TCC	0	0	81.55	61.54	20.01	Both
chr	91	2180836	2180763	View	Gly	TCC	0	0	81.55	61.54	20.01	Both

chr	58	2585478	2585403	View	His	GTG	0	0	77.38	60.08	17.30	Both
chr	66	2584759	2584684	View	His	GTG	0	0	77.38	60.08	17.30	Both

chr	16	340806	340882	View	Ile	GAT	0	0	96.36	73.51	22.85	Both
chr	41	2809862	2809786	View	Ile	GAT	0	0	96.36	73.51	22.85	Both
chr	74	2577691	2577615	View	Ile	GAT	0	0	96.36	73.51	22.85	Both
chr	77	2567585	2567509	View	Ile	GAT	0	0	96.36	73.51	22.85	Both

chr	93	1632070	1631984	View	Leu	CAA	0	0	75.97	50.32	25.65	Both

chr	88	2280751	2280666	View	Leu	GAG	0	0	54.18	21.00	33.18	Both

chr	35	2834124	2834036	View	Leu	TAA	0	0	77.00	44.52	32.48	Both
chr	38	2833856	2833768	View	Leu	TAA	0	0	77.00	44.52	32.48	Both
chr	32	2834391	2834303	View	Leu	TAA	0	0	78.99	47.85	31.14	Both
chr	94	857113	857025	View	Leu	TAA	0	0	78.99	47.85	31.14	Both

chr	62	2585137	2585054	View	Leu	TAG	0	0	71.94	49.15	22.79	Both
chr	69	2584510	2584427	View	Leu	TAG	0	0	71.94	49.15	22.79	Both
chr	46	2670304	2670221	View	Leu	TAG	0	0	72.66	50.50	22.16	Both

chr	50	2669951	2669876	View	Lys	CTT	0	0	98.48	74.63	23.85	Both
chr	54	2666358	2666283	View	Lys	CTT	0	0	98.48	74.63	23.85	Both

chr	52	2666614	2666542	View	Lys	TTT	0	0	60.99	42.01	18.98	Eufind
chr	22	2991089	2991017	View	Lys	TTT	0	0	63.73	36.94	26.79	Eufind
chr	12	101032	101107	View	Lys	TTT	0	0	78.37	44.61	33.76	Both
chr	60	2585318	2585243	View	Lys	TTT	0	0	78.37	44.61	33.76	Both
chr	61	2585223	2585148	View	Lys	TTT	0	0	78.37	44.61	33.76	Both
chr	68	2584596	2584521	View	Lys	TTT	0	0	78.37	44.61	33.76	Both
chr	75	2574436	2574361	View	Lys	TTT	0	0	78.37	44.61	33.76	Both

chr	18	637202	637277	View	Met	CAT	0	0	88.48	63.27	25.21	Both
chr	96	311428	311353	View	Met	CAT	0	0	88.48	63.27	25.21	Both
chr	33	2834296	2834221	View	Met	CAT	0	0	89.27	64.78	24.49	Both
chr	36	2834028	2833953	View	Met	CAT	0	0	89.27	64.78	24.49	Both
chr	34	2834217	2834141	View	Met	CAT	0	0	90.51	66.97	23.54	Both
chr	37	2833949	2833873	View	Met	CAT	0	0	90.51	66.97	23.54	Both
chr	1	14992	15068	View	Met	CAT	0	0	95.73	74.20	21.53	Both
chr	10	77603	77679	View	Met	CAT	0	0	95.73	74.20	21.53	Both

chr	14	266809	266884	View	Phe	GAA	0	0	88.03	68.69	19.34	Both
chr	17	344132	344207	View	Phe	GAA	0	0	88.03	68.69	19.34	Both
chr	43	2805336	2805261	View	Phe	GAA	0	0	88.03	68.69	19.34	Both
chr	89	2180995	2180920	View	Phe	GAA	0	0	88.03	68.69	19.34	Both

chr	55	2585792	2585717	View	Pro	TGG	0	0	82.23	61.56	20.67	Both
chr	95	357036	356961	View	Pro	TGG	0	0	82.23	61.56	20.67	Both

chr	21	2136677	2136767	View	SeC(p)	TCA	0	0	21.97	0.00	0.00	Eufind

chr	20	1036499	1036590	View	Ser	GCT	0	0	63.49	30.50	32.99	Eufind
chr	4	23407	23497	View	Ser	GCT	0	0	73.43	33.23	40.20	Both
chr	6	24228	24318	View	Ser	GCT	0	0	73.43	33.23	40.20	Both

chr	9	54437	54526	View	Ser	GGA	0	0	69.77	32.97	36.80	Both

chr	3	23283	23373	View	Ser	TGA	0	0	77.94	51.18	26.76	Both
chr	5	24132	24222	View	Ser	TGA	0	0	77.94	51.18	26.76	Both

chr	45	2770665	2770590	View	Thr	GGT	0	0	83.06	62.78	20.28	Both

chr	31	2990338	2990263	View	Thr	TGT	0	0	85.61	64.85	20.76	Both
chr	79	2500782	2500707	View	Thr	TGT	0	0	85.61	64.85	20.76	Both
chr	82	2500517	2500442	View	Thr	TGT	0	0	85.61	64.85	20.76	Both
chr	84	2500326	2500251	View	Thr	TGT	0	0	85.61	64.85	20.76	Both

chr	87	2480392	2480317	View	Trp	CCA	0	0	75.62	56.22	19.40	Both
chr	86	2480496	2480421	View	Trp	CCA	0	0	76.74	57.34	19.40	Both

chr	80	2500701	2500616	View	Tyr	GTA	0	0	70.80	37.92	32.88	Both
chr	83	2500436	2500351	View	Tyr	GTA	0	0	70.80	37.92	32.88	Both
chr	85	2500245	2500160	View	Tyr	GTA	0	0	70.80	37.92	32.88	Both

chr	23	2991012	2990937	View	Val	TAC	0	0	96.40	75.42	20.98	Both
chr	26	2990758	2990683	View	Val	TAC	0	0	96.40	75.42	20.98	Both
chr	29	2990505	2990430	View	Val	TAC	0	0	96.40	75.42	20.98	Both
chr	81	2500611	2500536	View	Val	TAC	0	0	96.40	75.42	20.98	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.