tRNAscan-SE Analysis of the Clostridium acetobutylicum Genome
|
| Predicted tRNA Secondary Structures |
Click on "View tRNA" buttons to view 2-D tRNA structures
Cove-predicted tRNA secondary structures rendered by
NAVIEW (c) 1988 Robert E. Bruccoleri
chr.trna2 (14575-14650) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (14608-14610) Score: 90.84
Seq: GGGGGATTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAAGAGTTCGAATCTCTTATTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna36 (3338036-3337961) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (3338003-3338001) Score: 90.84
Seq: GGGGGATTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAAGAGTTCGAATCTCTTATTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna5 (35984-36060) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (36018-36020) Score: 67.18
Seq: GCGATAGTACCTCAACTGGAtAGAGGACTCGGCTACGAACCGAGGCGcTGCGGGTTCGACTCCTGCCTGTCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna6 (45857-45933) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (45891-45893) Score: 76.26
Seq: GTGCTCGTAGCTCAGTAGGAtAGAGCAGCGGTTTCCTAAACCGCGTGcCGTAGGTTCGATTCCTATCGGGCACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna67 (2779107-2779031) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (2779073-2779071) Score: 78.09
Seq: GTGCCCATAGCTCAGTTGGAtAGAGTCGCAGACTTCGAATCTGAAGGtCGGGGGTTCGATTCCCTCTGGGTGCACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
chr.trna47 (2780856-2780780) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2780822-2780820) Score: 90.15
Seq: GCGTTTTTAGCTCAGTTGGAtAGAGCAACGGCCTTCTAAGCCGTGGGcCAGGGGTTCGAATCCCTTAAAACGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna54 (2780251-2780175) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2780217-2780215) Score: 90.15
Seq: GCGTTTTTAGCTCAGTTGGAtAGAGCAACGGCCTTCTAAGCCGTGGGcCAGGGGTTCGAATCCCTTAAAACGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna63 (2779482-2779406) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2779448-2779446) Score: 90.15
Seq: GCGTTTTTAGCTCAGTTGGAtAGAGCAACGGCCTTCTAAGCCGTGGGcCAGGGGTTCGAATCCCTTAAAACGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna21 (3506220-3506294) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (3506252-3506254) Score: 77.34
Seq: TCCGTGATAGCTCAACGGTGGAGCACTCGGCTGTTAACCGATAGGtTGAAGGTTCGAATCCTTTTCACGGAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
chr.trna15 (1110233-1110307) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (1110265-1110267) Score: 80.23
Seq: TCCGCGATAGCTCAACGGTGGAGCACTCGGCTGTTAACCGATAGGtTGAAGGTTCGAATCCTTTTCGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
chr.trna34 (3341728-3341654) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (3341696-3341694) Score: 80.23
Seq: TCCGCGATAGCTCAACGGTGGAGCACTCGGCTGTTAACCGATAGGtTGAAGGTTCGAATCCTTTTCGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
chr.trna37 (3332663-3332589) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (3332631-3332629) Score: 80.23
Seq: TCCGCGATAGCTCAACGGTGGAGCACTCGGCTGTTAACCGATAGGtTGAAGGTTCGAATCCTTTTCGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
chr.trna25 (3789651-3789575) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3789617-3789615) Score: 84.28
Seq: GGCTTGGTAGCTCAGCTGGTtAGAGTGCTGGCCTGTCACGCCAGAGGtCGAGGGTTCGATCCCCTTCCAAGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna29 (3789300-3789224) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3789266-3789264) Score: 84.28
Seq: GGCTTGGTAGCTCAGCTGGTtAGAGTGCTGGCCTGTCACGCCAGAGGtCGAGGGTTCGATCCCCTTCCAAGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna69 (2480426-2480350) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2480392-2480390) Score: 84.28
Seq: GGCTTGGTAGCTCAGCTGGTtAGAGTGCTGGCCTGTCACGCCAGAGGtCGAGGGTTCGATCCCCTTCCAAGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna13 (346199-346272) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (346231-346233) Score: 73.05
Seq: GGCGCTATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTTAtCCCCAGTTCAAATCTGGGTGGCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna72 (2480174-2480101) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (2480142-2480140) Score: 73.05
Seq: GGCGCTATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTTAtCCCCAGTTCAAATCTGGGTGGCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna73 (754160-754084) Length: 77 bp
Type: Gln Anticodon: CTG at 34-36 (754127-754125) Score: 68.12
Seq: TGCCCTATAGCCAAATTGGTAAGGCACCTGATTCTGGTTCAGGCACTGTGTAGGTTCGAGTCCTGCTAGGGCAGCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<......>>>>>.......<<<<<<<<<<<<....
chr.trna49 (2780686-2780611) Length: 76 bp
Type: Gln Anticodon: TTG at 33-35 (2780654-2780652) Score: 74.66
Seq: TGGGATGTAGCCAAGTGGTAAGGCACAGGACTTTGACTCCTGCATTCCGTAGGTTCGAATCCTGCCATCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<......>>>>>.......<<<<<<<<<<<<....
chr.trna58 (2779917-2779842) Length: 76 bp
Type: Gln Anticodon: TTG at 33-35 (2779885-2779883) Score: 74.66
Seq: TGGGATGTAGCCAAGTGGTAAGGCACAGGACTTTGACTCCTGCATTCCGTAGGTTCGAATCCTGCCATCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<......>>>>>.......<<<<<<<<<<<<....
chr.trna16 (1211446-1211520) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (1211479-1211481) Score: 74.78
Seq: GGCCCTATGGTCAAGCGGTtAAGACATCGCCCTCTCAAGGCGGAAtCACGGGTTCGATTCCCGTTGGGGCTACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna23 (3789826-3789755) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (3789793-3789791) Score: 65.70
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCACCCTTTCACGGTGGTAACATGGGTTCGATTCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna27 (3789475-3789404) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (3789442-3789440) Score: 65.70
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCACCCTTTCACGGTGGTAACATGGGTTCGATTCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna38 (3288071-3287997) Length: 75 bp
Type: Gly Anticodon: CCC at 33-35 (3288039-3288037) Score: 77.99
Seq: GCGGGAATAGCTCAGTGGTAGAGCACTAGCTTCCCAAGCTGGGTGcCGCGGGTTCGATACCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna52 (2780410-2780336) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (2780378-2780376) Score: 83.19
Seq: GCGGGAGTGGCTCAGTGGTAGAGCGTCACCTTGCCAAGGTGAACGtCGCGAGTTCGAATCTCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna61 (2779641-2779567) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (2779609-2779607) Score: 83.19
Seq: GCGGGAGTGGCTCAGTGGTAGAGCGTCACCTTGCCAAGGTGAACGtCGCGAGTTCGAATCTCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna71 (2480257-2480183) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (2480225-2480223) Score: 83.19
Seq: GCGGGAGTGGCTCAGTGGTAGAGCGTCACCTTGCCAAGGTGAACGtCGCGAGTTCGAATCTCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna46 (2780936-2780863) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (2780904-2780902) Score: 75.27
Seq: GCGGGTGTAACTCAATGGTAGAGTGCTAGCCTTCCAAGCTAGTTACGAGGGTTCGATTCCCTCTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna53 (2780330-2780257) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (2780298-2780296) Score: 75.27
Seq: GCGGGTGTAACTCAATGGTAGAGTGCTAGCCTTCCAAGCTAGTTACGAGGGTTCGATTCCCTCTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna55 (2780167-2780094) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (2780135-2780133) Score: 75.27
Seq: GCGGGTGTAACTCAATGGTAGAGTGCTAGCCTTCCAAGCTAGTTACGAGGGTTCGATTCCCTCTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna62 (2779561-2779488) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (2779529-2779527) Score: 75.27
Seq: GCGGGTGTAACTCAATGGTAGAGTGCTAGCCTTCCAAGCTAGTTACGAGGGTTCGATTCCCTCTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna48 (2780766-2780694) Length: 73 bp
Type: His Anticodon: GTG at 34-36 (2780733-2780731) Score: 59.68
Seq: GTGGGTATAGCTCAGTTGGTAGAGCGCCAGATTGTGGTTCTGGATGtCTAGGGTTCGAGACCCTATATTCACC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna57 (2779997-2779925) Length: 73 bp
Type: His Anticodon: GTG at 34-36 (2779964-2779962) Score: 59.68
Seq: GTGGGTATAGCTCAGTTGGTAGAGCGCCAGATTGTGGTTCTGGATGtCTAGGGTTCGAGACCCTATATTCACC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna18 (2699301-2699387) Length: 87 bp
Type: Leu Anticodon: CAA at 35-37 (2699335-2699337) Score: 67.17
Seq: GCCGAAGTGGTGGAATTGGCaGACGCAACGGACTCAAAATCCGTCGGTAGCAATACCATGCGGGTTCGACTCCCGCCTCCGGCACCA
Str: >>>>.>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<.<<<<....
chr.trna14 (798430-798512) Length: 83 bp
Type: Leu Anticodon: CAG at 35-37 (798464-798466) Score: 64.13
Seq: GCGGATATGGCGGAATTGGCaTACGCGCTAGTTTCAGGTACTAGTGAGAAATCATGCAGGTTCGAATCCTGTTATCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>..<<..>>>>>.......<<<<<<<<<<<<....
chr.trna17 (1270430-1270513) Length: 84 bp
Type: Leu Anticodon: GAG at 35-37 (1270464-1270466) Score: 52.31
Seq: GCGAGAGTGCTGGAATCGGCaGACAGGCACGTTTGAGGGGCGTGTGTCAtTGACGTACGGGTTCAAGTCCCGTCTCTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna31 (3354621-3354532) Length: 90 bp
Type: Leu Anticodon: TAA at 35-37 (3354587-3354585) Score: 73.84
Seq: GCCGAAGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGATGCTAATcACATCGTACCGGTTCGATTCCGGTCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna51 (2780509-2780426) Length: 84 bp
Type: Leu Anticodon: TAG at 35-37 (2780475-2780473) Score: 72.66
Seq: GCAGGTGTGGCGGAATTGGCaGACGCACTAGACTTAGGATCTAGCGCCTACGGCGTGGGGGTTCGACTCCCTTCACCTGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna60 (2779740-2779657) Length: 84 bp
Type: Leu Anticodon: TAG at 35-37 (2779706-2779704) Score: 72.66
Seq: GCAGGTGTGGCGGAATTGGCaGACGCACTAGACTTAGGATCTAGCGCCTACGGCGTGGGGGTTCGACTCCCTTCACCTGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna56 (2780087-2780012) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2780054-2780052) Score: 89.66
Seq: GCGTTATTAGCTCAGTTGGTAGAGCACCTGACTCTTAATCAGGGTGcCCAGGGTTCGAATCCCTGATGACGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna64 (2779382-2779307) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2779349-2779347) Score: 89.66
Seq: GCGTTATTAGCTCAGTTGGTAGAGCACCTGACTCTTAATCAGGGTGcCCAGGGTTCGAATCCCTGATGACGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna11 (315681-315756) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (315714-315716) Score: 78.49
Seq: GGTTTATTAGCTCAGTTGGTAGAGCACATGACTTTTAATCATGGTGtCCGGGGTTCGACTCCCCGATAAGCCACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna50 (2780588-2780513) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (2780555-2780553) Score: 86.17
Seq: GGTTTATTAGCTCAGTTGGTAGAGCACATGACTTTTAATCATGGTGtCCGGGGTTCGACTCCCCGATAAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna59 (2779819-2779744) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (2779786-2779784) Score: 86.17
Seq: GGTTTATTAGCTCAGTTGGTAGAGCACATGACTTTTAATCATGGTGtCCGGGGTTCGACTCCCCGATAAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna9 (173412-173487) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (173445-173447) Score: 86.17
Seq: GGTTTATTAGCTCAGTTGGTAGAGCACATGACTTTTAATCATGGTGtCCGGGGTTCGACTCCCCGATAAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna33 (3354439-3354363) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3354405-3354403) Score: 88.08
Seq: GGCGGAATAGCTCAGCTGGCtAGAGCATTCGGTTCATACCCGAAGTGtCGTAGGTTCAAGTCCTATTTCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna32 (3354521-3354446) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (3354488-3354486) Score: 89.17
Seq: CGCGGGGTGGAGCAGCTGGCAGCTCGTCGGGCTCATAACCCGAAGGtCACAGGTTCAAGTCCTGTCCCCGCAACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
chr.trna1 (14497-14573) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (14531-14533) Score: 94.95
Seq: GGATCTTTAGCTCAGTTGGTtAGAGCAACCGGCTCATAACCGGTCGGtCCGGGGTTCGAGTCCCTGAAGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna35 (3338114-3338038) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3338080-3338078) Score: 94.95
Seq: GGATCTTTAGCTCAGTTGGTtAGAGCAACCGGCTCATAACCGGTCGGtCCGGGGTTCGAGTCCCTGAAGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna10 (259480-259555) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (259513-259515) Score: 86.41
Seq: GGCCAGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCCCTGGTTCGATTCCTGGTCTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....
chr.trna12 (346111-346186) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (346144-346146) Score: 86.41
Seq: GGCCAGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCCCTGGTTCGATTCCTGGTCTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....
chr.trna70 (2480345-2480270) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (2480312-2480310) Score: 86.41
Seq: GGCCAGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCCCTGGTTCGATTCCTGGTCTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....
chr.trna20 (3376518-3376589) Length: 72 bp
Type: Pro Anticodon: CGG at 33-35 (3376550-3376552) Score: 76.05
Seq: CGGGGTGTAGCGCAGTGGTAGCGCGCATGCTTCGGGAGCATGATGtCGCAAGTTCAACTCTTGTCACCCCGA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna19 (3376400-3376475) Length: 76 bp
Type: Pro Anticodon: TGG at 34-36 (3376433-3376435) Score: 81.11
Seq: CGGGGTGTGGCGCAGATGGGAGCGCGCGTGGTTTGGGACCATGAGGtCGCAGGTTCAATCCCTGTCACCCCGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna45 (2781018-2780943) Length: 76 bp
Type: Pro Anticodon: TGG at 34-36 (2780985-2780983) Score: 81.11
Seq: CGGGGTGTGGCGCAGATGGGAGCGCGCGTGGTTTGGGACCATGAGGtCGCAGGTTCAATCCCTGTCACCCCGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna65 (2779288-2779213) Length: 76 bp
Type: Pro Anticodon: TGG at 34-36 (2779255-2779253) Score: 81.11
Seq: CGGGGTGTGGCGCAGATGGGAGCGCGCGTGGTTTGGGACCATGAGGtCGCAGGTTCAATCCCTGTCACCCCGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna7 (134685-134776) Length: 92 bp
Type: Ser Anticodon: CGA at 35-37 (134719-134721) Score: 70.06
Seq: GGAGAGATGTCGGAGTGGTctATCGTGCATGACTCGAAATCATGTGTACGGTTTAACCCGTACCGAGGGTTCAAATCCCTCTCTCTCCGCCA
Str: >>>>>>>...>>>.........<<<..>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<<<<<<<<....
chr.trna4 (34374-34464) Length: 91 bp
Type: Ser Anticodon: GCT at 35-37 (34408-34410) Score: 64.25
Seq: GGAGAAGTACTCAAGTGGTtgAAGAGGTGCCCTTGCTAAGGGTATAGGTCGGGTAACCGGCGCGAGAGTTCGAAACTCTCCTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna8 (135926-136015) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (135960-135962) Score: 69.85
Seq: GGAGAGATGTCCGAGTGGTttAAGGAGCACGCCTGGAACGCGTGTGTAGGGGAAACTCTACCGAGGGTTCGAATCCCTCTTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
chr.trna3 (34251-34341) Length: 91 bp
Type: Ser Anticodon: TGA at 36-38 (34286-34288) Score: 76.71
Seq: GGAAAGATGGTCGAGTTGGTttAAGGCACCGGTCTTGAAAACCGGCGTGCGGGTAACCGCACCTAGGGTTCGAATCCCTATCTTTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
chr.trna22 (3919119-3919044) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (3919086-3919084) Score: 88.43
Seq: GCTCCTGTAGCGCAGTTGGTAGCGCAGCTGATTCGTAATCAGTTGGtCGTAGGTTCAAATCCTATCTGGAGCACCA
Str: >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<....
chr.trna39 (3287988-3287913) Length: 76 bp
Type: Thr Anticodon: GGT at 34-36 (3287955-3287953) Score: 82.90
Seq: GCCCATGTGGCTCAGTAGGTAGAGCGTCACCTTGGTAAGGTGGAGGtCGCCAGTTCAAATCTGGTCGTGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna26 (3789563-3789488) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (3789530-3789528) Score: 92.30
Seq: GCTGGCATAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTATGGGTTCAATTCCTATTGCCAGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna30 (3789214-3789139) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (3789181-3789179) Score: 92.30
Seq: GCTGGCATAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTATGGGTTCAATTCCTATTGCCAGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna42 (2991664-2991589) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (2991631-2991629) Score: 93.14
Seq: GCTGGCATAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTGTGGGTTCAATTCCTACTGCCAGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna44 (2942981-2942906) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (2942948-2942946) Score: 80.28
Seq: AGGGGTATAGCTCAATTGGTAGAGTAACGGTCTCCAAAACCGTCGGtTGTGGGTTCGATTCCTACTGCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna43 (2991583-2991499) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (2991549-2991547) Score: 64.65
Seq: GGAGGAATTCCCGAGTGGCcaAAGGGGGCAGACTGTAAATCTGTTAGCTCAGCTTtCCATGGTTCGAATCCATGTTCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna40 (2991853-2991769) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (2991819-2991817) Score: 67.34
Seq: GGAGGAATTCCCGAGTGGCtaAAGGGGGCAGACTGTAAATCTGTTAGCTCAGCTTtCCATGGTTCGAATCCATGTTCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna66 (2779202-2779127) Length: 76 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 64.46
Seq: GCGGGTGTAACTCAATGGTAGAGTGCTAGCCTTTcCAAGCTAGTTTaCGAGGGTTCGATTCCCTCTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>........<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna41 (2991755-2991683) Length: 73 bp
Type: Val Anticodon: TAC at 34-36 (2991722-2991720) Score: 85.89
Seq: GGGCGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCACAGGTTCGAGCCCTGTAATGCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna68 (2480526-2480451) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (2480493-2480491) Score: 94.07
Seq: GGGCGCTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCACAGGTTCGAGCCCTGTAGTGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna24 (3789735-3789660) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (3789702-3789700) Score: 94.19
Seq: GGGCGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCACAGGTTCGAGCCCTGTAATGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna28 (3789384-3789309) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (3789351-3789349) Score: 94.19
Seq: GGGCGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCACAGGTTCGAGCCCTGTAATGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our
Bug and Request Tracking System.