tRNAscan-SE Analysis of the Clostridium acetobutylicum Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	2	14575	14650	View	Ala	TGC	0	0	90.84	74.28	16.56	Both
chr	36	3338036	3337961	View	Ala	TGC	0	0	90.84	74.28	16.56	Both

chr	5	35984	36060	View	Arg	ACG	0	0	67.18	44.33	22.85	Both

chr	6	45857	45933	View	Arg	CCT	0	0	76.26	51.53	24.73	Both

chr	67	2779107	2779031	View	Arg	TCG	0	0	78.09	64.76	13.33	Both

chr	47	2780856	2780780	View	Arg	TCT	0	0	90.15	66.88	23.27	Both
chr	54	2780251	2780175	View	Arg	TCT	0	0	90.15	66.88	23.27	Both
chr	63	2779482	2779406	View	Arg	TCT	0	0	90.15	66.88	23.27	Both

chr	21	3506220	3506294	View	Asn	GTT	0	0	77.34	54.80	22.54	Both
chr	15	1110233	1110307	View	Asn	GTT	0	0	80.23	60.10	20.13	Both
chr	34	3341728	3341654	View	Asn	GTT	0	0	80.23	60.10	20.13	Both
chr	37	3332663	3332589	View	Asn	GTT	0	0	80.23	60.10	20.13	Both

chr	25	3789651	3789575	View	Asp	GTC	0	0	84.28	62.50	21.78	Both
chr	29	3789300	3789224	View	Asp	GTC	0	0	84.28	62.50	21.78	Both
chr	69	2480426	2480350	View	Asp	GTC	0	0	84.28	62.50	21.78	Both

chr	13	346199	346272	View	Cys	GCA	0	0	73.05	42.95	30.10	Both
chr	72	2480174	2480101	View	Cys	GCA	0	0	73.05	42.95	30.10	Both

chr	73	754160	754084	View	Gln	CTG	0	0	68.12	49.48	18.64	Both

chr	49	2780686	2780611	View	Gln	TTG	0	0	74.66	51.02	23.64	Both
chr	58	2779917	2779842	View	Gln	TTG	0	0	74.66	51.02	23.64	Both

chr	16	1211446	1211520	View	Glu	CTC	0	0	74.78	54.26	20.52	Both

chr	23	3789826	3789755	View	Glu	TTC	0	0	65.70	41.40	24.30	Both
chr	27	3789475	3789404	View	Glu	TTC	0	0	65.70	41.40	24.30	Both

chr	38	3288071	3287997	View	Gly	CCC	0	0	77.99	64.11	13.88	Both

chr	52	2780410	2780336	View	Gly	GCC	0	0	83.19	63.23	19.96	Both
chr	61	2779641	2779567	View	Gly	GCC	0	0	83.19	63.23	19.96	Both
chr	71	2480257	2480183	View	Gly	GCC	0	0	83.19	63.23	19.96	Both

chr	46	2780936	2780863	View	Gly	TCC	0	0	75.27	54.14	21.13	Both
chr	53	2780330	2780257	View	Gly	TCC	0	0	75.27	54.14	21.13	Both
chr	55	2780167	2780094	View	Gly	TCC	0	0	75.27	54.14	21.13	Both
chr	62	2779561	2779488	View	Gly	TCC	0	0	75.27	54.14	21.13	Both

chr	48	2780766	2780694	View	His	GTG	0	0	59.68	38.38	21.30	Both
chr	57	2779997	2779925	View	His	GTG	0	0	59.68	38.38	21.30	Both

chr	18	2699301	2699387	View	Leu	CAA	0	0	67.17	49.47	17.70	Both

chr	14	798430	798512	View	Leu	CAG	0	0	64.13	34.10	30.03	Both

chr	17	1270430	1270513	View	Leu	GAG	0	0	52.31	26.01	26.30	Both

chr	31	3354621	3354532	View	Leu	TAA	0	0	73.84	44.78	29.06	Both

chr	51	2780509	2780426	View	Leu	TAG	0	0	72.66	50.50	22.16	Both
chr	60	2779740	2779657	View	Leu	TAG	0	0	72.66	50.50	22.16	Both

chr	56	2780087	2780012	View	Lys	CTT	0	0	89.66	66.74	22.92	Both
chr	64	2779382	2779307	View	Lys	CTT	0	0	89.66	66.74	22.92	Both

chr	11	315681	315756	View	Lys	TTT	0	0	78.49	54.31	24.18	Both
chr	50	2780588	2780513	View	Lys	TTT	0	0	86.17	61.98	24.19	Both
chr	59	2779819	2779744	View	Lys	TTT	0	0	86.17	61.98	24.19	Both
chr	9	173412	173487	View	Lys	TTT	0	0	86.17	61.98	24.19	Both

chr	33	3354439	3354363	View	Met	CAT	0	0	88.08	65.93	22.15	Both
chr	32	3354521	3354446	View	Met	CAT	0	0	89.17	62.71	26.46	Both
chr	1	14497	14573	View	Met	CAT	0	0	94.95	73.42	21.53	Both
chr	35	3338114	3338038	View	Met	CAT	0	0	94.95	73.42	21.53	Both

chr	10	259480	259555	View	Phe	GAA	0	0	86.41	64.61	21.80	Both
chr	12	346111	346186	View	Phe	GAA	0	0	86.41	64.61	21.80	Both
chr	70	2480345	2480270	View	Phe	GAA	0	0	86.41	64.61	21.80	Both

chr	20	3376518	3376589	View	Pro	CGG	0	0	76.05	51.77	24.28	Both

chr	19	3376400	3376475	View	Pro	TGG	0	0	81.11	60.43	20.68	Both
chr	45	2781018	2780943	View	Pro	TGG	0	0	81.11	60.43	20.68	Both
chr	65	2779288	2779213	View	Pro	TGG	0	0	81.11	60.43	20.68	Both

chr	7	134685	134776	View	Ser	CGA	0	0	70.06	42.42	27.64	Eufind

chr	4	34374	34464	View	Ser	GCT	0	0	64.25	24.72	39.53	Both

chr	8	135926	136015	View	Ser	GGA	0	0	69.85	38.89	30.96	Both

chr	3	34251	34341	View	Ser	TGA	0	0	76.71	42.83	33.88	Both

chr	22	3919119	3919044	View	Thr	CGT	0	0	88.43	72.16	16.27	Both

chr	39	3287988	3287913	View	Thr	GGT	0	0	82.90	64.61	18.29	Both

chr	26	3789563	3789488	View	Thr	TGT	0	0	92.30	71.40	20.90	Both
chr	30	3789214	3789139	View	Thr	TGT	0	0	92.30	71.40	20.90	Both
chr	42	2991664	2991589	View	Thr	TGT	0	0	93.14	72.64	20.50	Both

chr	44	2942981	2942906	View	Trp	CCA	0	0	80.28	60.67	19.61	Both

chr	43	2991583	2991499	View	Tyr	GTA	0	0	64.65	29.51	35.14	Both
chr	40	2991853	2991769	View	Tyr	GTA	0	0	67.34	32.20	35.14	Both

chr	66	2779202	2779127	View	Undet	???	0	0	64.46	43.33	21.13	Eufind

chr	41	2991755	2991683	View	Val	TAC	0	0	85.89	69.10	16.79	Both
chr	68	2480526	2480451	View	Val	TAC	0	0	94.07	77.16	16.91	Both
chr	24	3789735	3789660	View	Val	TAC	0	0	94.19	77.37	16.82	Both
chr	28	3789384	3789309	View	Val	TAC	0	0	94.19	77.37	16.82	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.