tRNAscan-SE Analysis of the Chromobacterium violaceum Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	422942	423018	View	Ile	GAT	0	0	89.60	67.94	21.66	Both
chr	2	423105	423180	View	Ala	TGC	0	0	91.79	78.86	12.93	Both
chr	3	503807	503883	View	Ile	GAT	0	0	89.60	67.94	21.66	Both
chr	4	503896	503971	View	Ala	TGC	0	0	91.79	78.86	12.93	Both
chr	5	759824	759908	View	Tyr	GTA	0	0	71.29	41.10	30.19	Both
chr	6	955155	955230	View	Ala	CGC	0	0	82.95	65.64	17.31	Both
chr	7	975612	975696	View	Leu	GAG	0	0	61.26	27.93	33.33	Both
chr	8	1006822	1006897	View	Phe	GAA	0	0	90.03	67.38	22.65	Both
chr	9	1006904	1006979	View	Phe	GAA	0	0	90.03	67.38	22.65	Both
chr	10	1058518	1058611	View	Ser	GCT	0	0	76.53	45.44	31.09	Both
chr	11	1058618	1058694	View	Arg	ACG	0	0	81.70	54.92	26.78	Both
chr	12	1058698	1058772	View	Glu	TTC	0	0	76.33	50.18	26.15	Both
chr	13	1155745	1155821	View	Ile	GAT	0	0	89.60	67.94	21.66	Both
chr	14	1155908	1155983	View	Ala	TGC	0	0	91.79	78.86	12.93	Both
chr	15	1273710	1273786	View	Met	CAT	0	0	88.02	63.53	24.49	Both
chr	16	1377435	1377510	View	Gly	GCC	0	0	86.61	69.04	17.57	Both
chr	17	1377534	1377609	View	Gly	GCC	0	0	92.58	68.42	24.16	Both
chr	18	1377632	1377707	View	Gly	GCC	0	0	92.58	68.42	24.16	Both
chr	19	1377732	1377807	View	Gly	GCC	0	0	92.58	68.42	24.16	Both
chr	20	1377837	1377912	View	Gly	GCC	0	0	92.58	68.42	24.16	Both
chr	21	1377958	1378031	View	Cys	GCA	0	0	66.65	47.66	18.99	Both
chr	22	1387010	1387094	View	Leu	TAA	0	0	72.80	43.91	28.89	Both
chr	23	1420085	1420161	View	Val	GAC	0	0	93.19	67.81	25.38	Both
chr	24	1427771	1427847	View	Pro	GGG	0	0	82.90	58.38	24.52	Both
chr	25	1648546	1648622	View	Ile	GAT	0	0	89.60	67.94	21.66	Both
chr	26	1648709	1648784	View	Ala	TGC	0	0	91.79	78.86	12.93	Both
chr	27	1746117	1746207	View	Ser	GGA	0	0	72.16	45.47	26.69	Both
chr	28	1746261	1746351	View	Ser	GGA	0	0	71.03	45.72	25.31	Both
chr	29	1978844	1978919	View	Asn	GTT	0	0	84.58	65.34	19.24	Both
chr	30	2853221	2853305	View	Leu	TAG	0	0	72.88	43.92	28.96	Both
chr	31	3187082	3187157	View	Thr	TGT	0	0	94.39	85.55	8.84	Both
chr	32	3257362	3257437	View	Ala	GGC	0	0	86.46	68.18	18.28	Both
chr	33	3262246	3262321	View	Ala	GGC	0	0	86.46	68.18	18.28	Both
chr	34	3262330	3262405	View	Glu	TTC	0	0	55.53	28.71	26.82	Both
chr	35	3262417	3262492	View	Ala	GGC	0	0	86.46	68.18	18.28	Both
chr	36	3472822	3472897	View	Val	TAC	0	0	97.28	78.15	19.13	Both
chr	37	3472910	3472986	View	Asp	GTC	0	0	94.55	73.65	20.90	Both
chr	38	3473013	3473088	View	Val	TAC	0	0	97.28	78.15	19.13	Both
chr	39	3473101	3473177	View	Asp	GTC	0	0	94.55	73.65	20.90	Both
chr	40	3473204	3473279	View	Val	TAC	0	0	97.28	78.15	19.13	Both
chr	41	3473292	3473368	View	Asp	GTC	0	0	94.55	73.65	20.90	Both
chr	42	3473395	3473470	View	Val	TAC	0	0	97.28	78.15	19.13	Both
chr	43	3473483	3473559	View	Asp	GTC	0	0	94.55	73.65	20.90	Both
chr	44	3473587	3473663	View	Val	CAC	0	0	87.88	66.83	21.05	Eufind
chr	45	3473670	3473746	View	Asp	GTC	0	0	94.55	73.65	20.90	Both
chr	46	3473774	3473850	View	Val	CAC	0	0	87.88	66.83	21.05	Eufind
chr	47	3473857	3473933	View	Asp	GTC	0	0	94.55	73.65	20.90	Both
chr	48	3622292	3622365	View	Gly	CCC	0	0	80.56	63.10	17.46	Both
chr	49	3828836	3828922	View	Leu	CAG	0	0	69.13	43.45	25.68	Both
chr	50	3828974	3829060	View	Leu	CAG	0	0	69.13	43.45	25.68	Both
chr	51	3829094	3829180	View	Leu	CAG	0	0	75.09	43.57	31.52	Both
chr	52	3829238	3829324	View	Leu	CAG	0	0	69.13	43.45	25.68	Both
chr	53	4402077	4402153	View	Arg	CCG	0	0	81.85	63.71	18.14	Both
chr	54	4474196	4474272	View	Met	CAT	0	0	88.36	69.62	18.74	Both
chr	55	4474308	4474384	View	Met	CAT	0	0	88.36	69.62	18.74	Both
chr	56	4587229	4587154	View	Lys	TTT	0	0	95.69	80.28	15.41	Both
chr	57	4587116	4587041	View	Lys	CTT	0	0	90.10	62.05	28.05	Both
chr	58	4587012	4586937	View	Lys	TTT	0	0	95.69	80.28	15.41	Both
chr	59	4586901	4586826	View	Lys	CTT	0	0	90.10	62.05	28.05	Both
chr	60	4586787	4586712	View	Lys	TTT	0	0	95.69	80.28	15.41	Both
chr	61	4533679	4533595	View	Tyr	GTA	0	0	71.29	41.10	30.19	Both
chr	62	4533542	4533469	View	Gly	TCC	0	0	82.17	64.72	17.45	Both
chr	63	4533444	4533370	View	Thr	GGT	0	0	88.50	62.10	26.40	Both
chr	64	4532128	4532053	View	Trp	CCA	0	0	79.97	57.23	22.74	Both
chr	65	4529690	4529616	View	Thr	GGT	0	0	89.57	64.24	25.33	Both
chr	66	4437749	4437673	View	Ile	GAT	0	0	89.60	67.94	21.66	Both
chr	67	4437586	4437511	View	Ala	TGC	0	0	91.79	78.86	12.93	Both
chr	68	4389342	4389268	View	Gln	TTG	0	0	76.23	51.24	24.99	Both
chr	69	4325794	4325718	View	Met	CAT	0	0	88.02	63.53	24.49	Both
chr	70	4248210	4248134	View	Ile	GAT	0	0	89.60	67.94	21.66	Both
chr	71	4248047	4247972	View	Ala	TGC	0	0	91.79	78.86	12.93	Both
chr	72	4059912	4059834	View	Met	CAT	0	0	73.75	51.48	22.27	tRNAscan
chr	73	3855548	3855472	View	Pro	CGG	0	0	78.56	52.43	26.13	Both
chr	74	3855393	3855317	View	Pro	CGG	0	0	78.56	52.43	26.13	Both
chr	75	3855255	3855180	View	Thr	CGT	0	0	92.22	72.88	19.34	Both
chr	76	3854622	3854547	View	Gln	TTG	0	0	87.95	68.47	19.48	Both
chr	77	3823739	3823663	View	Ile	GAT	0	0	89.60	67.94	21.66	Both
chr	78	3823576	3823501	View	Ala	TGC	0	0	91.79	78.86	12.93	Both
chr	79	3375024	3374948	View	Ile	GAT	0	0	89.60	67.94	21.66	Both
chr	80	3374935	3374860	View	Ala	TGC	0	0	91.79	78.86	12.93	Both
chr	81	2747458	2747383	View	Val	TAC	0	0	97.28	78.15	19.13	Both
chr	82	2747375	2747299	View	Asp	GTC	0	0	89.49	68.59	20.90	Both
chr	83	2511712	2511625	View	Ser	TGA	0	0	78.99	40.78	38.21	Both
chr	84	2094869	2094793	View	Pro	TGG	0	0	89.02	72.37	16.65	Both
chr	85	2094774	2094698	View	Arg	TCT	0	0	93.33	74.62	18.71	Both
chr	86	2094670	2094595	View	His	GTG	0	0	81.86	60.41	21.45	Both
chr	87	2094549	2094474	View	His	GTG	0	0	81.86	60.41	21.45	Both
chr	88	2094447	2094372	View	His	GTG	0	0	81.86	60.41	21.45	Both
chr	89	1433534	1433459	View	Asn	GTT	0	0	88.24	67.67	20.57	Both
chr	90	1433427	1433352	View	Asn	GTT	0	0	84.58	65.34	19.24	Both
chr	91	1433319	1433244	View	Asn	GTT	0	0	84.58	65.34	19.24	Both
chr	92	1263645	1263556	View	Ser	CGA	0	0	72.28	40.96	31.32	Both
chr	93	1062059	1061983	View	Arg	ACG	0	0	81.70	54.92	26.78	Both
chr	94	1061977	1061903	View	Glu	TTC	0	0	76.33	50.18	26.15	Both
chr	95	1061895	1061819	View	Arg	ACG	0	0	81.70	54.92	26.78	Both
chr	96	1061815	1061741	View	Glu	TTC	0	0	76.33	50.18	26.15	Both
chr	97	878849	878775	View	Arg	CCT	0	0	68.23	42.78	25.45	Both
chr	98	682118	682034	View	Leu	CAA	0	0	75.47	45.61	29.86	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.