tRNAscan-SE Analysis of the Chlorobium tepidum TLS Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna50 (16877-16802)	Length: 76 bp
Type: Ala	Anticodon: CGC at 34-36 (16844-16842)	Score: 82.01
Seq: GGGGCTTTAGCTCAGTTGGTAGAGCGTCTCGTTCGCAATGAGAAGGtCAGGGGTTCGACTCCCCTAAGCTCCACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna47 (331299-331227)	Length: 73 bp
Type: Ala	Anticodon: GGC at 34-36 (331266-331264)	Score: 81.53
Seq: GGGGCTATAGCTCAGTTGGTAGAGCATTTGCATGGCATGCAAAGGGtCAGGAGTTCGAGTCTCCTTAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (141260-141335)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (141293-141295)	Score: 92.25
Seq: GGGGCTTTAGCTCAGTTGGTAGAGCATCTGCTTTGCAAGCAGAGGGtCAACGGTTCGAGTCCGTTAAGCTCCACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna31 (2035056-2034981)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (2035023-2035021)	Score: 92.25
Seq: GGGGCTTTAGCTCAGTTGGTAGAGCATCTGCTTTGCAAGCAGAGGGtCAACGGTTCGAGTCCGTTAAGCTCCACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (563371-563295)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (563337-563335)	Score: 82.50
Seq: GCACCCGTAGCTCAACTGGAtAGAGCATCTGACTACGGATCAGAAGGtTAGGGGTTCGAATCCTCTCGGGTGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna19 (771728-771803)	Length: 76 bp
Type: Arg	Anticodon: CCG at 34-36 (771761-771763)	Score: 71.33
Seq: GCCCTTGTAGCTCAGTGGAtAGAGCAGCAGTTTCCGGAACTGAAGGtCGGCAGTTCGAATCTGTCCAAGGGCGCAA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna33 (1923656-1923584)	Length: 73 bp
Type: Arg	Anticodon: CCT at 34-36 (1923623-1923621)	Score: 72.89
Seq: ACCCTTGTAGCTCAGTGGAtAGAGCAGCAGTTTCCTAAACTGTTGGtCGGCAGTTCGAGTCTGCCCAAGGGTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (710427-710500)	Length: 74 bp
Type: Arg	Anticodon: TCT at 35-37 (710461-710463)	Score: 78.30
Seq: GTGCCCGTAGCTCAACCGGAtAGAGCATCAGCCTTCTAAGCTGAGGGtTACAGGTTCGAGTCCTGTCGGGCATA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna32 (1998467-1998393)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (1998435-1998433)	Score: 80.62
Seq: TCCGCGATAGCTCAATGGTAGAGCATTCGGCTGTTAACCGAAGGGtTGTAGGTTCGAATCCTACTCGCGGAGCAA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (1738672-1738746)	Length: 75 bp
Type: Asp	Anticodon: GTC at 36-38 (1738707-1738709)	Score: 89.85
Seq: GGAGCTGTAGCTCAGTCtGGTtAGAGCGCCTGCCTGTCACGCAGGAGGtCGCGGGTTCGAGCCCCGTCAGCTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1080477-1080550)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (1080509-1080511)	Score: 67.27
Seq: GGTGAAGTGGCCGAGTGGCTAGGCAGAGGTCTGCAAAACCTCGTACAGCGGTTCGAATCCGCTCTTCACCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna43 (558527-558455)	Length: 73 bp
Type: Gln	Anticodon: CTG at 34-36 (558494-558492)	Score: 68.25
Seq: TGAGGAGTGGCCAAATTGGTAAGGCTCCTGACTCTGGATCAGGCAAtTCCAGGTTCGAGTCCTGGCTCCTCAG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (701232-701306)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (701264-701266)	Score: 69.29
Seq: TGGGGCGTCGCCAAGTGGTAAGGCATCGGCCTTTGGAGCCGACATcCGCAGGTTCGAATCCTGCCGCCCCAGCAA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna41 (563486-563410)	Length: 77 bp
Type: Glu	Anticodon: CTC at 35-37 (563452-563450)	Score: 70.54
Seq: GGCGTGTTCGTCTAGTGGCccAGGACATCGCCCTCTCAAGGCGAAGAtCACGGGTTCGAATCCCGTACACGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna17 (710656-710727)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (710689-710691)	Score: 63.90
Seq: GGCCCCATCGACTAGTGGTtAGGTCATCACCCTTTCAAGGTGGTAGCACGGGTTCGAATCCCGTTGGGGTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (1240961-1241033)	Length: 73 bp
Type: Gly	Anticodon: CCC at 34-36 (1240994-1240996)	Score: 79.44
Seq: GCGGGTGTAACTCAGTTGGTAGAGTGTTTGCTTCCCAAGCAAAATGtCGCGAGTTCGAATCTCGTCACCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna44 (526892-526817)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (526859-526857)	Score: 86.53
Seq: GCGGGAATAGCTCAGCTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAGTCTCGTTTCCCGCTCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna45 (526610-526535)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (526577-526575)	Score: 86.53
Seq: GCGGGAATAGCTCAGCTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAGTCTCGTTTCCCGCTCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (2058968-2058896)	Length: 73 bp
Type: Gly	Anticodon: TCC at 34-36 (2058935-2058933)	Score: 81.22
Seq: GCGGGAGTAACTCAGCTGGTAGAGTCACAGCCTTCCAAGCTGTTGGtCGCGGGTTCGAGTCCCGTCTCCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (710528-710604)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (710562-710564)	Score: 75.30
Seq: GTGATTGTAGCTCAGTTGGTtAGAGCGCCAGGTTGTGGCCCTGGAGGtCGGGGGTTCGAGTCCCCTCATTCACCCCG
Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....

chr.trna2 (141140-141216)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (141174-141176)	Score: 101.74
Seq: GGGCCTGTAGCTCAGTTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCAGTGGTTCAAATCCACTCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (2035176-2035100)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (2035142-2035140)	Score: 101.74
Seq: GGGCCTGTAGCTCAGTTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCAGTGGTTCAAATCCACTCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna39 (736155-736072)	Length: 84 bp
Type: Leu	Anticodon: CAA at 35-37 (736121-736119)	Score: 66.14
Seq: GCCAAAGTGGCGGAACTGGTaGACGCGCTGGACTCAAAATCCAGTGGGCGCAAGCTCGTGTGGGTTCGAGTCCCACCTTTGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna26 (1291102-1291186)	Length: 85 bp
Type: Leu	Anticodon: CAG at 35-37 (1291136-1291138)	Score: 60.87
Seq: GCCCGAATGGCGGAACTGGTaGACGCACTCGTTTCAGGGGCGAGCGCCGAGAGGTGTAGGAGTTCGAATCTCCTTTCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna10 (275966-276047)	Length: 82 bp
Type: Leu	Anticodon: GAG at 35-37 (276000-276002)	Score: 54.44
Seq: GCCCGAGTGGTGGAATTGGTaGACACACCATCTTGAGGGGGTGGCGCCGTTAGGTGTAGGAGTTCGAATCTCCTCTCGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna49 (204361-204273)	Length: 89 bp
Type: Leu	Anticodon: TAA at 35-37 (204327-204325)	Score: 70.10
Seq: GCCGAAGTAGCGGAACTGGTaAACGCCCGAGACTTAAAATCCCGTGTTCAGCAATGGACGTGCAGGTTCGATTCCTGCCTTCGGCACCC
Str: >>>>>>>..>>>...........<<<.>>.>>.......<<.<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna48 (210566-210478)	Length: 89 bp
Type: Leu	Anticodon: TAA at 35-37 (210532-210530)	Score: 72.62
Seq: GCCGAAGTGGCGGAACTGGTaGACGCCCGGGACTTAAAATCCCGTGTTCAGCAATGGACGTGCGGGTTCGATTCCCGCCTTCGGCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna38 (736263-736182)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (736229-736227)	Score: 63.23
Seq: GCGAGAGTGGTGAAATTGGTaTACACGCTAGTCTTAGGAACTAGTGCCGTGAGGCGTAAGGGTTCGAGTCCCTTCTCTCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna18 (717274-717349)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (717307-717309)	Score: 96.14
Seq: GCACTCGTAGCTCAGTTGGTAGAGCAACTGACTCTTAATCAGTGGGtCCAAGGTTCGAGTCCTTGCGAGTGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna9 (275856-275928)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (275889-275891)	Score: 85.56
Seq: GAGAATATAGCTCAGTCGGTAGAGCAACTGCCTTTTAAGCAGTGGGtCGAAGGTTCGAGTCCTTCTATTCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna37 (756304-756229)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (756271-756269)	Score: 76.09
Seq: CGTGGGGTGGAGCAATTGGTAGCTCGTCGGGCTCATAACCCGAAGGtTGCAGGTTCAAGTCCTGTCCCCACCACTA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna21 (915378-915453)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (915411-915413)	Score: 83.77
Seq: CGTGGGGTGGAGCAATTGGTAGCTCGTCGGGCTCATAACCCGAAGGtTGCAGGTTCAAGTCCTGTCCCCACCACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna24 (1240837-1240910)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (1240871-1240873)	Score: 84.24
Seq: GGTGAGGTAGCTCAGTTGGTtAGAGCACAGGATTCATAACCCTGAGGtCGAGGGTTCAACTCCCTCCCTCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna40 (563586-563510)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (563552-563550)	Score: 95.76
Seq: GGGCCCTTAGCTCAGTTGGTcAGAGCAAGCGACTCATAATCGCTGGGtCGTAGGTTCAAGTCCTACAGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (311834-311909)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (311867-311869)	Score: 95.77
Seq: GGACAGATAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGTGtCGGGGGTTCGATTCCCTCTCTGTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna20 (771819-771891)	Length: 73 bp
Type: Pro	Anticodon: CGG at 34-36 (771852-771854)	Score: 79.21
Seq: CGGGGTGTGGCTCAGCTGGTAGAGTGCTGCGTTCGGGACGCAGAGGtCGTGGGTTCGAGTCCCGCCACCCCGA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna8 (188766-188842)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (188800-188802)	Score: 76.44
Seq: CGGCGTATAGCGCAGCCtGGTAGCGCACTACCTTGGGGTGGTAGGGGtCGTGGGTTCAAATCCCGCTACGCCGACAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (710320-710395)	Length: 76 bp
Type: Pro	Anticodon: TGG at 34-36 (710353-710355)	Score: 87.54
Seq: CGGGGCATGGCGCAGCTGGTAGCGTGCCTGCTTTGGGAGCAGGAGGtCCCGAGTTCGAGTCTCGGTGCCCCGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna46 (523449-523363)	Length: 87 bp
Type: Ser	Anticodon: CGA at 35-37 (523415-523413)	Score: 54.52
Seq: GGAGAGGTGCGAGAGTGGTtgAATCGGGCGGTCTCGAAAACCGTTGTGCGCGCAAGTGTACCGTGGGTTCGAATCCCACCCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna36 (1208632-1208543)	Length: 90 bp
Type: Ser	Anticodon: GCT at 35-37 (1208598-1208596)	Score: 61.05
Seq: GGAGAGGTGGCCGAGTGGCtgAAGGCACCGGTTTGCTAAACCGACGTAGTTCGATTaGAGCTACCGAGGGTTCGAATCCCTCCCTCTCCG
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna34 (1208892-1208802)	Length: 91 bp
Type: Ser	Anticodon: GGA at 36-38 (1208857-1208855)	Score: 70.95
Seq: GGAGAGATCGCATAGTTGGTctAGTGCGCTCGCCTGGAAAGCGGGTAGGGTGTAAcAGCCCtCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>.>.....<.<<...>>>>>.......<<<<<<<<<<<<....

chr.trna35 (1208727-1208645)	Length: 83 bp
Type: Ser	Anticodon: TGA at 34-36 (1208694-1208692)	Score: 69.75
Seq: GGAGGATTAGCCTAATTGGTAAGGCAGCAGTCTTGAAAACTGCCGGGTTTGCGCCCtTGGGGGTTCGAGTCCCTCATCCTCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<..>>>.><.<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna28 (2097742-2097814)	Length: 73 bp
Type: Thr	Anticodon: CGT at 34-36 (2097775-2097777)	Score: 76.73
Seq: GCCACCTTAGCTCAGTTGGTAGAGCAACTGTTTCGTAAATAGTAGGtCGTGGGTTCAAGTCCCTCAGGTGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

chr.trna6 (152200-152275)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (152233-152235)	Score: 84.99
Seq: GCTGATGTAGCTCAGTCGGTAGAGCACTTCCTTGGTAAGGAAGAGGtCATCGGTTCAAGTCCGATCATCAGCTCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (152008-152083)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (152041-152043)	Score: 82.25
Seq: GCTGGTGTAGCTCAATTGGTAGAGCAGCTGACTTGTAATCAGCAGGtTGCGGGTTCGAGTCCCATCACCAGCTCGA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna7 (152295-152367)	Length: 73 bp
Type: Trp	Anticodon: CCA at 34-36 (152328-152330)	Score: 75.95
Seq: ACGTCAGTAGCTTAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGtTGGGGGTTCGAGTCCCTCCTGACGTG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (152097-152179)	Length: 83 bp
Type: Tyr	Anticodon: GTA at 35-37 (152131-152133)	Score: 73.03
Seq: GGGTAGGTAGCGAAGCGGTcaAACGCAACAGACTGTAAATCTGTCGACATATGTCTtCGGAGGTTCGAATCCTCCCCTACCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>><<<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna23 (1199337-1199413)	Length: 77 bp
Type: Val	Anticodon: CAC at 35-37 (1199371-1199373)	Score: 93.35
Seq: GGACAATTAGCTCAGTTGGTtAGAGCGTTCGCTTCACACGCGAGAGGtCGTAGGTTCGAATCCTACATTGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (421537-421610)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (421571-421573)	Score: 81.39
Seq: GGGCGGTTAGCTCAGTTGGTtAGAGCGCTACCTTGACACGGTAGAGGtCAGAAGTTCGAATCTTCTATCGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna1 (120624-120700)	Length: 77 bp
Type: Val	Anticodon: TAC at 35-37 (120658-120660)	Score: 84.81
Seq: GGGTCTCTAGCTCAGCTGGTtAGAGCGACTGGTTTACACCCAGTAGGtCGGGGGTTCGAATCCCTCGGGACCCACCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.