tRNAscan-SE Analysis of the Chlorobium tepidum TLS Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	120624	120700	View	Val	TAC	0	0	84.81	63.43	21.38	Both
chr	2	141140	141216	View	Ile	GAT	0	0	101.74	79.95	21.79	Both
chr	3	141260	141335	View	Ala	TGC	0	0	92.25	73.61	18.64	Both
chr	4	152008	152083	View	Thr	TGT	0	0	82.25	66.22	16.03	Both
chr	5	152097	152179	View	Tyr	GTA	0	0	73.03	43.35	29.68	Both
chr	6	152200	152275	View	Thr	GGT	0	0	84.99	59.76	25.23	Both
chr	7	152295	152367	View	Trp	CCA	0	0	75.95	50.83	25.12	Both
chr	8	188766	188842	View	Pro	GGG	0	0	76.44	52.49	23.95	Both
chr	9	275856	275928	View	Lys	TTT	0	0	85.56	59.19	26.37	Both
chr	10	275966	276047	View	Leu	GAG	0	0	54.44	23.03	31.41	Both
chr	11	311834	311909	View	Phe	GAA	0	0	95.77	73.86	21.91	Both
chr	12	421537	421610	View	Val	GAC	0	0	81.39	61.18	20.21	Both
chr	13	701232	701306	View	Gln	TTG	0	0	69.29	44.79	24.50	Both
chr	14	710320	710395	View	Pro	TGG	0	0	87.54	60.67	26.87	Both
chr	15	710427	710500	View	Arg	TCT	0	0	78.30	55.23	23.07	Both
chr	16	710528	710604	View	His	GTG	0	0	75.30	54.48	20.82	Both
chr	17	710656	710727	View	Glu	TTC	0	0	63.90	41.54	22.36	Both
chr	18	717274	717349	View	Lys	CTT	0	0	96.14	69.10	27.04	Both
chr	19	771728	771803	View	Arg	CCG	0	0	71.33	46.81	24.52	Both
chr	20	771819	771891	View	Pro	CGG	0	0	79.21	57.83	21.38	Both
chr	21	915378	915453	View	Met	CAT	0	0	83.77	62.91	20.86	Both
chr	22	1080477	1080550	View	Cys	GCA	0	0	67.27	37.09	30.18	Both
chr	23	1199337	1199413	View	Val	CAC	0	0	93.35	73.30	20.05	Both
chr	24	1240837	1240910	View	Met	CAT	0	0	84.24	66.94	17.30	Both
chr	25	1240961	1241033	View	Gly	CCC	0	0	79.44	53.71	25.73	Both
chr	26	1291102	1291186	View	Leu	CAG	0	0	60.87	35.81	25.06	Both
chr	27	1738672	1738746	View	Asp	GTC	0	0	89.85	73.53	16.32	Both
chr	28	2097742	2097814	View	Thr	CGT	0	0	76.73	56.58	20.15	Both
chr	29	2058968	2058896	View	Gly	TCC	0	0	81.22	58.19	23.03	Both
chr	30	2035176	2035100	View	Ile	GAT	0	0	101.74	79.95	21.79	Both
chr	31	2035056	2034981	View	Ala	TGC	0	0	92.25	73.61	18.64	Both
chr	32	1998467	1998393	View	Asn	GTT	0	0	80.62	53.15	27.47	Both
chr	33	1923656	1923584	View	Arg	CCT	0	0	72.89	42.54	30.35	Both
chr	34	1208892	1208802	View	Ser	GGA	0	0	70.95	45.96	24.99	Both
chr	35	1208727	1208645	View	Ser	TGA	0	0	69.75	39.05	30.70	Both
chr	36	1208632	1208543	View	Ser	GCT	0	0	61.05	33.77	27.28	Both
chr	37	756304	756229	View	Met	CAT	0	0	76.09	55.23	20.86	Both
chr	38	736263	736182	View	Leu	TAG	0	0	63.23	29.46	33.77	Both
chr	39	736155	736072	View	Leu	CAA	0	0	66.14	36.08	30.06	Both
chr	40	563586	563510	View	Met	CAT	0	0	95.76	71.20	24.56	Both
chr	41	563486	563410	View	Glu	CTC	0	0	70.54	44.17	26.37	Both
chr	42	563371	563295	View	Arg	ACG	0	0	82.50	64.63	17.87	Both
chr	43	558527	558455	View	Gln	CTG	0	0	68.25	40.57	27.68	Both
chr	44	526892	526817	View	Gly	GCC	0	0	86.53	62.36	24.17	Both
chr	45	526610	526535	View	Gly	GCC	0	0	86.53	62.36	24.17	Both
chr	46	523449	523363	View	Ser	CGA	0	0	54.52	15.52	39.00	Both
chr	47	331299	331227	View	Ala	GGC	0	0	81.53	60.02	21.51	Both
chr	48	210566	210478	View	Leu	TAA	0	0	72.62	42.46	30.16	Both
chr	49	204361	204273	View	Leu	TAA	0	0	70.10	44.83	25.27	Both
chr	50	16877	16802	View	Ala	CGC	0	0	82.01	67.05	14.96	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.