tRNAscan-SE Analysis of the Chlorobium tepidum TLS Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGTTGGTAGAGCATTTGCATGGCATGCAAAGG...........GtCAGGAGTTCGAGTCTCCTTAGCTCCA... chr.trna47-AlaGGC Sc: 81.53  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTTTAGCTCAGTTGGTAGAGCGTCTCGTTCGCAATGAGAAG...........GtCAGGGGTTCGACTCCCCTAAGCTCCACAA chr.trna50-AlaCGC Sc: 82.01  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTTTAGCTCAGTTGGTAGAGCATCTGCTTTGCAAGCAGAGG...........GtCAACGGTTCGAGTCCGTTAAGCTCCACAA chr.trna31-AlaTGC Sc: 92.25  
GGGGCTTTAGCTCAGTTGGTAGAGCATCTGCTTTGCAAGCAGAGG...........GtCAACGGTTCGAGTCCGTTAAGCTCCACAA chr.trna3-AlaTGC Sc: 92.25  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAACTGGAtA.GAGCATCTGACTACGGATCAGAAG...........GtTAGGGGTTCGAATCCTCTCGGGTGTACCA chr.trna42-ArgACG Sc: 82.50  


>>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCCTTGTAGCTCAGT.GGAtA.GAGCAGCAGTTTCCGGAACTGAAG...........GtCGGCAGTTCGAATCTGTCCAAGGGCGCAA chr.trna19-ArgCCG Sc: 71.33  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
ACCCTTGTAGCTCAGT.GGAtA.GAGCAGCAGTTTCCTAAACTGTTG...........GtCGGCAGTTCGAGTCTGCCCAAGGGTA... chr.trna33-ArgCCT Sc: 72.89  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGCCCGTAGCTCAACCGGAtA.GAGCATCAGCCTTCTAAGCTGAGG...........GtTACAGGTTCGAGTCCTGTCGGGCATA... chr.trna15-ArgTCT Sc: 78.30  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCGCGATAGCTCAATGGTA.GAGCATTCGGCTGTTAACCGAAGG...........GtTGTAGGTTCGAATCCTACTCGCGGAGCAA chr.trna32-AsnGTT Sc: 80.62  



Asp tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGCTGTAGCTCAGTCtGGTtAGAGCGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGCCCCGTCAGCTCCG... chr.trna27-AspGTC Sc: 89.85  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTGAAGTGGCCGAGTGGCT.AGGCAGAGGTCTGCAAAACCTCGT...........ACAGCGGTTCGAATCCGCTCTTCACCTCCA chr.trna22-CysGCA Sc: 67.27  



Gln tRNAs


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGAGGAGTGGCCAAATTGGTA.AGGCTCCTGACTCTGGATCAGGCA...........AtTCCAGGTTCGAGTCCTGGCTCCTCAG... chr.trna43-GlnCTG Sc: 68.25  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGCGTCGCCAAGT.GGTA.AGGCATCGGCCTTTGGAGCCGACA...........TcCGCAGGTTCGAATCCTGCCGCCCCAGCAA chr.trna13-GlnTTG Sc: 69.29  



Glu tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGTGTTCGTCTAGTGGCccA.GGACATCGCCCTCTCAAGGCGAAG...........AtCACGGGTTCGAATCCCGTACACGCTACCA chr.trna41-GluCTC Sc: 70.54  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCCATCGACTAGTGGTt.A.GGTCATCACCCTTTCAAGGTGGTA...........G.CACGGGTTCGAATCCCGTTGGGGTCA... chr.trna17-GluTTC Sc: 63.90  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGCTGGTAGAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCG chr.trna45-GlyGCC Sc: 86.53  
GCGGGAATAGCTCAGCTGGTAGAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCG chr.trna44-GlyGCC Sc: 86.53  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAACTCAGTTGGTAGAGTGTTTGCTTCCCAAGCAAAAT...........GtCGCGAGTTCGAATCTCGTCACCCGCT... chr.trna25-GlyCCC Sc: 79.44  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTAACTCAGCTGGTAGAGTCACAGCCTTCCAAGCTGTTG...........GtCGCGGGTTCGAGTCCCGTCTCCCGCT... chr.trna29-GlyTCC Sc: 81.22  



His tRNAs



>>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<.<<<<....
GTGATTGTAGCTCAGTTGGTtAGAGCGCCAGGTTGTGGCCCTGGAG...........GtCGGGGGTTCGAGTCCCCTCATTCACCCCG chr.trna16-HisGTG Sc: 75.30  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTGTAGCTCAGTTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCAGTGGTTCAAATCCACTCAGGCCCACCA chr.trna30-IleGAT Sc: 101.74  
GGGCCTGTAGCTCAGTTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCAGTGGTTCAAATCCACTCAGGCCCACCA chr.trna2-IleGAT Sc: 101.74  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGAGTGGTGGAATTGGTaGACACACCATCTTGAGGGGGTGGCGCC..GTTA....GGTGTAGGAGTTCGAATCTCCT.CTCGGGCA... chr.trna10-LeuGAG Sc: 54.44  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGAATGGCGGAACTGGTaGACGCACTCGTTTCAGGGGCGAGCGCC..GAGA....GGTGTAGGAGTTCGAATCTCCT.TTCGGGCACCA chr.trna26-LeuCAG Sc: 60.87  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<....
GCGAGAGTGGTGAAATTGGTaTACACGCTAGTCTTAGGAACTAGTGCC..GTGA....GGCGTAAGGGTTCGAGTCCCTT.CTCTCGCA... chr.trna38-LeuTAG Sc: 63.23  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCAAAGTGGCGGAACTGGTaGACGCGCTGGACTCAAAATCCAGTGGGC.GCAA...GCTCGTGTGGGTTCGAGTCCCAC.CTTTGGTA... chr.trna39-LeuCAA Sc: 66.14  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>......<<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGCGGAACTGGTaGACGCCCGGGACTTAAAATCCCGTGTTCAGCAA..TGGACGTGCGGGTTCGATTCCCGC.CTTCGGCACAA chr.trna48-LeuTAA Sc: 72.62  
>>>>>>>..>>>...........<<<.>>.>>.......<<.<<.>>>>>......<<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTAGCGGAACTGGTaAACGCCCGAGACTTAAAATCCCGTGTTCAGCAA..TGGACGTGCAGGTTCGATTCCTGC.CTTCGGCACCC chr.trna49-LeuTAA Sc: 70.10  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACTCGTAGCTCAGTTGGTAGAGCAACTGACTCTTAATCAGTGG...........GtCCAAGGTTCGAGTCCTTGCGAGTGCACCA chr.trna18-LysCTT Sc: 96.14  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGAATATAGCTCAGTCGGTAGAGCAACTGCCTTTTAAGCAGTGG...........GtCGAAGGTTCGAGTCCTTCTATTCTCA... chr.trna9-LysTTT Sc: 85.56  



Met tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCTTAGCTCAGTTGGTcAGAGCAAGCGACTCATAATCGCTGG...........GtCGTAGGTTCAAGTCCTACAGGGCCCACCA chr.trna40-MetCAT Sc: 95.76  
>>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GGTGAGGTAGCTCAGTTGGTtAGAGCACAGGATTCATAACCCTGAG...........GtCGAGGGTTCAACTCCCTCCCTCACCA... chr.trna24-MetCAT Sc: 84.24  
.>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGTGGGGTGGAGCAATTGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtTGCAGGTTCAAGTCCTGTCCCCACCACCA chr.trna21-MetCAT Sc: 83.77  
CGTGGGGTGGAGCAATTGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtTGCAGGTTCAAGTCCTGTCCCCACCACTA chr.trna37-MetCAT Sc: 76.09  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACAGATAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGT...........GtCGGGGGTTCGATTCCCTCTCTGTCCACCA chr.trna11-PheGAA Sc: 95.77  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGCGTATAGCGCAGCCtGGTAGCGCACTACCTTGGGGTGGTAGGG...........GtCGTGGGTTCAAATCCCGCTACGCCGACAA chr.trna8-ProGGG Sc: 76.44  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTGGCTCAGCT.GGTAGAGTGCTGCGTTCGGGACGCAGAG...........GtCGTGGGTTCGAGTCCCGCCACCCCGA... chr.trna20-ProCGG Sc: 79.21  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCATGGCGCAGCT.GGTAGCGTGCCTGCTTTGGGAGCAGGAG...........GtCCCGAGTTCGAGTCTCGGTGCCCCGACCA chr.trna14-ProTGG Sc: 87.54  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<..>>.>..............<.<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGATCGCATAGTTGGTctA.GTGCGCTCGCCTGGAAAGCGGGTAGGGT...GTAAc......AGCCCtCGAGGGTTCGAATCCCTC..TCTCTCCGCCA chr.trna34-SerGGA Sc: 70.95  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>>..........<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGCGAGAGT.GGTtgA.ATCGGGCGGTCTCGAAAACCGTT.GTGCGC.GCAA.....GTGTAC..CGTGGGTTCGAATCCCAC..CCTCTCCG... chr.trna46-SerCGA Sc: 54.52  

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<..>>>.>............<.<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGGATTAGCCTAATTGGT..A.AGGCAGCAGTCTTGAAAACTGCCGGGTTT............GCGCCCtTGGGGGTTCGAGTCCCTC..ATCCTCCG... chr.trna35-SerTGA Sc: 69.75  


>>>>>>>..>>>.............<<<..>>>>.......<<<<...>>>>>>>........<<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGT.GGCtgA.AGGCACCGGTTTGCTAAACCGAC.GTAGTTCGATTa...GAGCTAC..CGAGGGTTCGAATCCCTC..CCTCTCCG... chr.trna36-SerGCT Sc: 61.05  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGATGTAGCTCAGTCGGTAGAGCACTTCCTTGGTAAGGAAGAG...........GtCATCGGTTCAAGTCCGATCATCAGCTCCG chr.trna6-ThrGGT Sc: 84.99  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GCCACCTTAGCTCAGTTGGTAGAGCAACTGTTTCGTAAATAGTAG...........GtCGTGGGTTCAAGTCCCTCAGGTGGCT... chr.trna28-ThrCGT Sc: 76.73  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GCTGGTGTAGCTCAATTGGTAGAGCAGCTGACTTGTAATCAGCAG...........GtTGCGGGTTCGAGTCCCATCACCAGCTCGA chr.trna4-ThrTGT Sc: 82.25  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
ACGTCAGTAGCTTAATTGGTAGAGCAGCGGTCTCCAAAACCGCAG...........GtTGGGGGTTCGAGTCCCTCCTGACGTG... chr.trna7-TrpCCA Sc: 75.95  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>......<<<<<...>>>>>.......<<<<<.<<<<<<<....
GGGTAGGTAGCGAAGCGGTcaA.ACGCAACAGACTGTAAATCTGTCGACAT......ATGTCTtCGGAGGTTCGAATCCTCC.CCTACCCA... chr.trna5-TyrGTA Sc: 73.03  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGGTTAGCTCAGTTGGTtAGAGCGCTACCTTGACACGGTAGAG...........GtCAGAAGTTCGAATCTTCTATCGCCCA... chr.trna12-ValGAC Sc: 81.39  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACAATTAGCTCAGTTGGTtAGAGCGTTCGCTTCACACGCGAGAG...........GtCGTAGGTTCGAATCCTACATTGTCCACCA chr.trna23-ValCAC Sc: 93.35  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTCTAGCTCAGCTGGTtAGAGCGACTGGTTTACACCCAGTAG...........GtCGGGGGTTCGAATCCCTCGGGACCCACCC chr.trna1-ValTAC Sc: 84.81

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.