tRNAscan-SE Analysis of the Chlamydia trachomatis Genome

[Main Overview] [Secondary Structures] [Analysis Notes]
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tRNAs Sorted by tRNA Isoacceptor Typeplain text version 

[Ala]
[Arg]
[Asn]
[Asp]
[Cys]
[Gln]
[Glu]
[Gly]
[His]
[Ile]
[Leu]
[Lys]
[Met]
[Phe]
[Pro]
[Ser]
[Thr]
[Trp]
[Tyr]
[Val]

[Selenocysteine]
[Possible pseudogene]
[Undetermined]










Sequence
Name		tRNA
#		 tRNA BoundsLink to
Genome Browser		tRNA
Isotype		 Anticodon Intron BoundsScores First-Pass
Scanner


Begin EndBegin EndTotal (Cove) HMM2' Str 




chr 21 725508 725436 ViewAlaGGC 0 0 74.81 54.3520.46 Both





chr 34 202492 202420 ViewAlaTGC 0 0 82.67 61.8420.83 Both



 


chr 22 682286 682214 ViewArgACG 0 0 73.39 55.2318.16 Both





chr 6 543862 543935 ViewArgTCG 0 0 75.01 54.5020.51 Both





chr 9 752671 752743 ViewArgTCT 0 0 87.30 66.0921.21 Both



 


chr 37 42801 42730 ViewAsnGTT 0 0 75.21 54.6820.53 Both



 


chr 31 250362 250289 ViewAspGTC 0 0 76.67 64.4712.20 Both



 


chr 15 888006 887936 ViewCysGCA 0 0 61.76 30.0731.69 Both



 


chr 11 937062 937133 ViewGlnTTG 0 0 63.88 37.2926.59 Both



 


chr 19 775427 775353 ViewGluTTC 0 0 50.11 31.2518.86 Both



 


chr 17 814611 814540 ViewGlyGCC 0 0 75.06 55.3119.75 Both





chr 18 778661 778591 ViewGlyTCC 0 0 69.63 43.7225.91 Both



 


chr 16 853628 853555 ViewHisGTG 0 0 81.22 59.9921.23 Both



 


chr 35 202414 202341 ViewIleGAT 0 0 83.91 51.9132.00 Both



 


chr 5 541063 541145 ViewLeuCAA 0 0 63.24 34.2329.01 Both





chr 7 605752 605835 ViewLeuCAG 0 0 55.53 24.6230.91 Both





chr 25 546070 545989 ViewLeuGAG 0 0 51.25 24.3026.95 Both





chr 23 582069 581987 ViewLeuTAA 0 0 58.49 19.2639.23 Both





chr 13 1018111 1018192 ViewLeuTAG 0 0 62.58 34.8427.74 Both



 


chr 20 775336 775264 ViewLysTTT 0 0 89.09 65.5223.57 Both



 


chr 32 234447 234375 ViewMetCAT 0 0 71.20 43.9127.29 Both



chr 33 234356 234283 ViewMetCAT 0 0 73.61 55.7717.84 Both



chr 3 368396 368468 ViewMetCAT 0 0 78.30 60.4717.83 Both



 


chr 26 490055 489983 ViewPheGAA 0 0 76.09 58.4917.60 Both



 


chr 8 718303 718376 ViewProGGG 0 0 67.00 40.9526.05 Both





chr 36 68995 68921 ViewProTGG 0 0 78.14 54.1623.98 Both



 


chr 4 409238 409324 ViewSerCGA 0 0 62.46 33.7928.67 Both





chr 24 574985 574897 ViewSerGCT 0 0 59.15 21.3037.85 Both





chr 27 485330 485244 ViewSerGGA 0 0 65.29 32.0233.27 Both





chr 12 984330 984414 ViewSerTGA 0 0 70.17 33.7536.42 Both



 


chr 10 773399 773471 ViewThrCGT 0 0 76.52 61.1015.42 Both





chr 28 363281 363210 ViewThrGGT 0 0 75.30 57.0118.29 Both





chr 1 158662 158734 ViewThrTGT 0 0 80.09 59.6820.41 Both



 


chr 29 361939 361867 ViewTrpCCA 0 0 70.24 58.6411.60 Both



 


chr 2 158744 158826 ViewTyrGTA 0 0 56.66 29.1427.52 Both



 


chr 14 979594 979521 ViewValGAC 0 0 72.25 40.2332.02 Both





chr 30 250442 250370 ViewValTAC 0 0 78.56 64.6813.88 Both




 






The Genomic tRNA Database is curated by  Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our 
Bug and Request Tracking System.