tRNAscan-SE Analysis of the Chlamydia trachomatis Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTATTAGCTCAGTTGGTAGAGCGCAACAATGGCATTGTTGAG...........GtCAGCGGTTCGATCCCGCTATGCTCCA... chr.trna21-AlaGGC Sc: 74.81  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGACTTAGCTTAGTTGGTAGAGCATCTGATTTGCATTCAGAAG...........GtCAGGAGTTCGAATCTCCTAGTCTCCA... chr.trna34-AlaTGC Sc: 82.67  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCAGTAGCTCAGT.GGAtA.GAGTACCTGGCTACGAACCAGGTG...........GtCAGAGGTTCAAATCCTCTTTGGTGCG... chr.trna22-ArgACG Sc: 73.39  



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCGATAGCTCAACTGGAtA.GAGTACCTGGCTTCGGACCAGGTG...........GtTGGAGGTTCGAACCCTCTTCGGTGCG... chr.trna6-ArgTCG Sc: 75.01  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCGATAGCTCAGT.GGAtA.GAGCATCCGCCTTCTAAGCGGATG...........GtCGCAGGTTCGAATCCTGCTCGGTCCG... chr.trna9-ArgTCT Sc: 87.30  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
TCCGGAGTAGCTCAGCGGTA.GAGCAGTGGACTGTTAATCCATTG...........GtCGTTGGTTCGAACCCATCCTCCGGAG... chr.trna37-AsnGTT Sc: 75.21  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTAGTTCAACTGGTtAGAGCACCGCCCTGTCAAGGCGGAA...........GtTGCGGGTTCGAGCCCCGTCTCTCGCG... chr.trna31-AspGTC Sc: 76.67  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
GGTGGCATCGCCAAGCGGTA.AGGCCGAGGCCTGCAAAGCCTCT...........AtCCCCGGTTCGATTCCGGG.TGCCACCT... chr.trna15-CysGCA Sc: 61.76  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTGTGGCCAAGCGGTA.AGGCAGCGGTTTTTGGTACCGCGC...........AtCGGAGGTTCGAATCCTTCCACCCCAG... chr.trna11-GlnTTG Sc: 63.88  



Glu tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCCATCGTCTAGCCtGGCccAGGACATCGGATTTTCATTCCGGTA...........ACAGGGGTTCGAATCCCCTTGGGGTCA... chr.trna19-GluTTC Sc: 50.11  



Gly tRNAs



>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGTGGTA.GAGCGCCACGTTGCCAACGTGAAG...........GtCGTGAGTTCAAGCCTCATCACCCGCT... chr.trna17-GlyGCC Sc: 75.06  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAATGGTA.GAGCTGTAGCCTTCCAAGCTACCG...........G.TGTCAGTTCGATTCTGATCGGGCGCT... chr.trna18-GlyTCC Sc: 69.63  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGAACGTAGCTCAGTTGGTtAGAGCGTCGGATTGTGGTTCCGAAG...........GtCGCGGGTTCGAACCCCGTCGTTCGCC... chr.trna16-HisGTG Sc: 81.22  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGTTATAGCTCAGTTGGTtAGAGCGCGACACTGATAATGTCGAG...........GtCCCAAGTTCAAGTCTTGGTAACCGCA... chr.trna35-IleGAT Sc: 83.91  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<..<<<<<<<....
GCGGAAGTGGCGGAATTGGTaT.ACGCGCTATCTTGAGGTGGTAGTGGAGC...........TTTCCtTAGGGGTTCGAGTCCCCT..CTTTCGCA... chr.trna25-LeuGAG Sc: 51.25  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<..<<<<<<<....
GCAGCTATGGCGGAACCGGTaG.ACGCGCTAGATTCAGGTTCTAGTGAGC..TTTT.......GCTCaTGGAAGTTCAAGTCTTCT..TAGCTGCA... chr.trna7-LeuCAG Sc: 55.53  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>.........<<<.....>>>>>.......<<<<<..<<<<<<<....
GCCCAGGTGGTGAAATTGGTaG.ACACGCTGGATTTAGGATCCAGTGCTTCG.........CGGCA..TGTAGGTTCAAGTCCTAT..CCTGGGCA... chr.trna13-LeuTAG Sc: 62.58  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<..<<<<<<<....
GCCGGCGTGGCGGAAT.GGTaG.ACGCGGTAGACTCAAAATCTACT.CTTA.GCAG......TAAGG.TGTTGGTTCGAGTCCAAT..CGCCGGCA... chr.trna5-LeuCAA Sc: 63.24  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<..<<<<<<<....
GCTCAGATGGTGGAAT.GGTaG.ACACTAGGGACTTAAAATCCCTT.GGGC.TTTG......GCCCG.TGCAAGTTCGAGTCTTGT..TCTGAGCA... chr.trna23-LeuTAA Sc: 58.49  



Lys tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTTTAGCTCAGCGGTtA.GAGCATCTCACTTTTAATGAGAGG...........GtCGAAGGTTCGAATCCTTCAAGACCCA... chr.trna20-LysTTT Sc: 89.09  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCAATAGCTCAGC.GGTtA.GAGCTGCGGACTCATAACCCGTAG...........GtCCCTGGTTCAAATCCAGGTTGCCCCA... chr.trna3-MetCAT Sc: 78.30  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGTATAGCTCAGGTGGTtA.GAGCAGCGGAATCATAATCCGCGT...........GtCGTTGGTTCAAGTCCGACTACCGCTA... chr.trna33-MetCAT Sc: 73.61  
.>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGATAGAGTAGT.GGTcA.TCTCGTTGGGCTCATAACCCAAAG...........GtCGGAGGTTCGAATCCTTCTCCCGCTA... chr.trna32-MetCAT Sc: 71.20  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTAGATAGCTCAGCTGGTAGAGCAGAGGACTGAAGATCCTTGT...........GtCGTCGGTTCGATCCCGGCTCTGGCCA... chr.trna26-PheGAA Sc: 76.09  



Pro tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CTGGATGTAGCGCAGCCtGGT.AGCGCACTTGCATGGGGTGCAAGGG...........GgCGGAGGTTCAAATCCTCTCATCCAGA... chr.trna8-ProGGG Sc: 67.00  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTATAGCGCAGCCtGGTtAGCGCGGTTGCTTTGGGAGCAATAG...........GtCGGGGGTTCGAATCCCTCTACTCCGA... chr.trna36-ProTGG Sc: 78.14  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGTCCGAGTGGCttA.AGGAGCACGCTTGGAAAGCGTGT.GTGCGT.TAAC..GCGTAC..CGAGGGTTCGAATCCCTC..TCTCTCCG... chr.trna27-SerGGA Sc: 65.29  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAAGAGTGGCAGAGTGGTcgA.ATGCATCTGATTCGAAATCAGAAGTCCC...TCAAc...GGGGAcCGGGGGTTCAAATCCCTT..CTCTTCCG... chr.trna4-SerCGA Sc: 62.46  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAAGAATGGCAGAGCGGTttA.ATGCACCTGTCTTGAAAACAGGAGACCT...GAAA....GGGTC.CGGGGGTTCGAATCCCTC..TTCTTCCG... chr.trna12-SerTGA Sc: 70.17  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAAAGATGACTGAGTGGTcgA.AAGTACGTCCCTGCTAAGGACGC.GTACCCCTTAA.AGGGTAC..CGAGGGTTCGAATCCCTC..TCTTTCCG... chr.trna24-SerGCT Sc: 59.15  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCAGGTAGCTCAGT.GGTA.GAGCACTTGCATGGTAAGCAAGTG...........GcCGTAGGTTCAATTCCTATTCTGGGCA... chr.trna28-ThrGGT Sc: 75.30  

>>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTAAATAGCTCAGTTGGTA.GAGCAACGCATTCGTAACGCGTAG...........GtCGTCGGTTCGATCCCGGCTTTGGGCA... chr.trna10-ThrCGT Sc: 76.52  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGAGTAGCTCAATTGGCA.GAGCATTCGATTTGTAATCGAACG...........GtTGAGGGTTCAATTCCTTTCTCCAGCA... chr.trna1-ThrTGT Sc: 80.09  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGTGTAGCTTAGATGGTAGAGCAGTGGCCTCCAAAGCCGCCG...........GtCGGGGGTTCGAATCCCTCCGCACTCG... chr.trna29-TrpCCA Sc: 70.24  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGGGGTGTCGCATAGCGGTcaA.TTGCATCGGACTGTAAATCCGACTCCTTAC....GGATaCGTTGGTTCAAATCCAGC.CACCCCCA... chr.trna2-TyrGTA Sc: 56.66  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTATTAGCTCAGTTGGTtA.GAGCGTCACGTTGACATCGTGAAG...........GtCAGCTGTTCAAGTCAGCTATATCCCA... chr.trna14-ValGAC Sc: 72.25  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGATGCGTAGCTCAGC.GGTtA.GAGCACCTGTCTTACACACAGGGG...........GtCATAGGTTCAAATCCTGTCGTGTCCA... chr.trna30-ValTAC Sc: 78.56

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.