tRNAscan-SE Analysis of the Chlamydophila pneumoniae TW 183 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chr.trna15 (833425-833497)	Length: 73 bp
Type: Ala	Anticodon: GGC at 34-36 (833458-833460)	Score: 72.48
Seq: GGGGTATTAGCTCAGTTGGTAGAGCGCAACAATGGCATTGTTGAGGtCAGCGGTTCGACCCCGCTATGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna35 (266556-266484)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (266523-266521)	Score: 82.13
Seq: GGGGACTTAGCTTAGTTGGTAGAGCGTCTGATTTGCATTCAGAAGGtCAGGAGTTCGAATCTCCTAGTCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna17 (874722-874795)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (874756-874758)	Score: 78.75
Seq: GCACCAGTAGCTCAGTCGGAtAGAGTACCTGGCTACGAACCAGGTGGtCAGAGGTTCGAGTCCTCTCTGGTGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna8 (459641-459714)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (459675-459677)	Score: 60.56
Seq: GTCCTCGTAGCTCAGCAGGAtAGAGCGGTTGCCTCCTAAGCAGCAGGcCATGCGTTCGAATCGCATCGAGGACG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (674586-674659)	Length: 74 bp
Type: Arg	Anticodon: TCG at 35-37 (674620-674622)	Score: 75.86
Seq: GCACCGATAGCTCAATTGGAtAGAGTACCTGGCTTCGGACCAGGTGGtTGGAGGTTCGAGCCCTCTTCGGTGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (804720-804648)	Length: 73 bp
Type: Arg	Anticodon: TCT at 34-36 (804687-804685)	Score: 85.99
Seq: GGACCGATAGCTCAGTGGAtAGAGCATTCGCCTTCTAAGCGAATGGtCGCAGGTTCGAGTCCTGCTCGGTCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna37 (161884-161813)	Length: 72 bp
Type: Asn	Anticodon: GTT at 33-35 (161852-161850)	Score: 75.21
Seq: TCCGGAGTAGCTCAGCGGTAGAGCAGTGGACTGTTAATCCATTGGtCGTTGGTTCGAACCCATCCTCCGGAG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

chr.trna6 (293565-293638)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (293599-293601)	Score: 74.26
Seq: GCGGGAGTAGTTCAATTGGTtAGAGCACCGCCCTGTCAAGGCGGAAGtTGCGGGTTCGACCCCCGTCTCTCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna23 (1027926-1027856)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (1027894-1027892)	Score: 66.18
Seq: GGTGGCATAGCCAAGCGGTAAGGCCGAGGCCTGCAAAGCCTCTAtCCCCGGTTCGATTCCGGGTGCCACCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1082955-1083026)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (1082987-1082989)	Score: 63.17
Seq: TGGGGTGTGGCCAAGCGGTAAGGCAGCGGTTTTTGGTACCGTGCAtCGGAGGTTCGAATCCTTCCACCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (782144-782218)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (782180-782182)	Score: 50.11
Seq: GGCCCCATCGTCTAGCCtGGCccAGGACATCGGATTTTCATTCCGGTAACAGGGGTTCGAATCCCCTTGGGGTCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (958930-958859)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (958898-958896)	Score: 78.97
Seq: GCGGGTGTAGCTCAGTGGTAGAGCGTCACGTTGCCAACGTGAAGGtCGTGAGTTCAAGCCTCATCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (778932-779002)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (778964-778966)	Score: 69.63
Seq: GCGCCCGTAGCTCAATGGTAGAGCTGTAGCCTTCCAAGCTACCGGTGTCAGTTCGATTCTGATCGGGCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (997345-997272)	Length: 74 bp
Type: His	Anticodon: GTG at 35-37 (997311-997309)	Score: 79.24
Seq: GCGAACGTAGCTCAGCTGGTtAGAGCGTCGGATTGTGGTTCCGAAGGtCGCGGGTTCAAGCCCCGTCGTTCGCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (266479-266406)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (266445-266443)	Score: 83.91
Seq: GCGGTTATAGCTCAGTTGGTtAGAGCGCGACACTGATAATGTCGAGGtCCCAAGTTCAAGTCTTGGTAACCGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (669558-669640)	Length: 83 bp
Type: Leu	Anticodon: CAA at 34-36 (669591-669593)	Score: 61.72
Seq: GCCGGTGTGGCGGAATGGTaGACGCGGTAGACTCAAAATCTACTCTTAGCAATAAGGTGTTGGTTCGAGTCCGATCACCGGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna11 (736725-736808)	Length: 84 bp
Type: Leu	Anticodon: CAG at 35-37 (736759-736761)	Score: 58.42
Seq: GCAGCTATGGCGAAATCGGTaGACGCGCTAGATTCAGGTTCTAGTGAGCTTATGCTCaTGGAAGTTCAAGTCTTCTTAGCTGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna30 (677581-677500)	Length: 82 bp
Type: Leu	Anticodon: GAG at 35-37 (677547-677545)	Score: 51.25
Seq: GCGGAAGTGGCGGAATTGGTaTACGCGCTATCTTGAGGTGGTAGTGGAGCTTTCCtTAGGGGTTCGAGTCCCCTCTTTCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>..<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna28 (713293-713211)	Length: 83 bp
Type: Leu	Anticodon: TAA at 34-36 (713260-713258)	Score: 60.66
Seq: GCTCAGATGGTGGAATGGTaGACACTAGGGACTTAAAATCCCTTGGGCGTAGGCCCGTGCAAGTTCGAGTCTTGTTCTGAGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1171566-1171647)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (1171600-1171602)	Score: 62.09
Seq: GCCCAGGTGGTGAAATTGGTaGACACGCTGGATTTAGGATCCAGTGCTTTCGGGCATGTAGGTTCAAGTCCTATCCTGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna14 (782244-782316)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (782277-782279)	Score: 89.48
Seq: GGGTCTTTAGCTCAGCGGTtAGAGCACCTCACTTTTAATGAGGGGGtCGAAGGTTCAAATCCTTCAAGACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (196724-196796)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (196757-196759)	Score: 71.20
Seq: CGCGGGATAGAGTAGTGGTcATCTCGTTGGGCTCATAACCCAAAGGtCGGAGGTTCGAATCCTTCTCCCGCTA
Str: .>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..

chr.trna4 (196812-196885)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (196846-196848)	Score: 72.73
Seq: GGCGGTATAGCTCAGGTGGTtAGAGCAGCAGAATCATAATCTGCGTGtCGTTGGTTCAAATCCGACTACCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna38 (85016-84944)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (84983-84981)	Score: 82.60
Seq: GGGGCGGTAGCTCAGTGGTtAGAGCTGCGGACTCATAACCCGTAGGtCACAGGTTCAAATCCTGTCCGCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (628767-628695)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (628734-628732)	Score: 72.05
Seq: GGCTAGATAGCTCAGATGGTAGAGCAGAGGATTGAAGATCCTTGTGtCGTCGGTTCGATCCCGGCTCTGGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (841248-841321)	Length: 74 bp
Type: Pro	Anticodon: GGG at 35-37 (841282-841284)	Score: 63.89
Seq: CTGGGTGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGGGgCGGAGGTTCAAATCCTCTCATCCAGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (407348-407422)	Length: 75 bp
Type: Pro	Anticodon: TGG at 36-38 (407383-407385)	Score: 80.24
Seq: CGGAGTATAGCGCAGCTtGGTtAGCGCGGTTGCTTTGGGAGCAATAGGtCGGGGGTTCGAATCCCTCTACTCCGA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (1225733-1225647)	Length: 87 bp
Type: Ser	Anticodon: CGA at 35-37 (1225699-1225697)	Score: 60.98
Seq: GGAAGAGTGGCAGAGTGGTcgAATGCGTCTGATTCGAAATCAGAAGTTCTCTTACAGGAACCAGGGGTTCGAATCCCTTCTCTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>......<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna29 (705763-705676)	Length: 88 bp
Type: Ser	Anticodon: GCT at 35-37 (705729-705727)	Score: 56.02
Seq: GGAAAGATGACTGAGTGGTcgAAAGTACGTCCCTGCTAAGGACGCGTACCCCTAAAGGGTACCGAGGGTTCGAATCCCTCTCTTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna32 (624309-624223)	Length: 87 bp
Type: Ser	Anticodon: GGA at 35-37 (624275-624273)	Score: 64.95
Seq: GGAGAGATGTCCGAGTGGCttAAGGAGCACGCTTGGAAAGCGTGTGTGCGTTAACGCGTACCGTGGGTTCGAATCCCACTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna19 (1137736-1137820)	Length: 85 bp
Type: Ser	Anticodon: TGA at 35-37 (1137770-1137772)	Score: 70.17
Seq: GGAAGAATGGCAGAGCGGTttAATGCACCTGTCTTGAAAACAGGAGACCTGAAAGGGTCCGGGGGTTCGAATCCCTCTTCTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna27 (784102-784030)	Length: 73 bp
Type: Thr	Anticodon: CGT at 34-36 (784069-784067)	Score: 75.64
Seq: GCCTAAATAGCTCAGTTGGTAGAGCAACACATTCGTAACGTGTAGGtCGTCGGTTCGATCCCGGCTTTGGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna1 (87151-87222)	Length: 72 bp
Type: Thr	Anticodon: GGT at 33-35 (87183-87185)	Score: 82.61
Seq: GCCCAGATAGCTCAGTGGTAGAGCACTTGCATGGTAAGCAAGCGGtCGTAGGTTCAATTCCTATTCTGGGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna33 (290891-290819)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (290858-290856)	Score: 80.09
Seq: GCTGGAGTAGCTCAATTGGCAGAGCATTCGATTTGTAATCGAACGGtTGAGGGTTCAATTCCTTTCTCCAGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna2 (88492-88564)	Length: 73 bp
Type: Trp	Anticodon: CCA at 34-36 (88525-88527)	Score: 76.03
Seq: GGGTGTGTAGCTTAGCTGGTAGAGCAGTGGCCTCCAAAGCCGCCGGtCGGGGGTTCGATTCCCTTCGCACCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (290813-290731)	Length: 83 bp
Type: Tyr	Anticodon: GTA at 35-37 (290779-290777)	Score: 54.34
Seq: GGGGGTGTCGCATAGTGGTcaATTGCATCGGACTGTAAATCCGGCTCCTTACGGATaCGTTGGTTCAAATCCAGCCACCCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1133163-1133090)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (1133129-1133127)	Score: 72.25
Seq: GGGGTATTAGCTCAGTTGGTtAGAGCGTCACGTTGACATCGTGAAGGtCAGCTGTTCAAGTCAGCTATATCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (293489-293561)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (293522-293524)	Score: 78.56
Seq: GGATGCGTAGCTCAGCGGTtAGAGCACCTGTCTTACACACAGGGGGtCATAGGTTCAAATCCTGTCGTGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.