tRNAscan-SE Analysis of the Chlamydophila pneumoniae J138 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna15 (835440-835512)	Length: 73 bp
Type: Ala	Anticodon: GGC at 34-36 (835473-835475)	Score: 72.48
Seq: GGGGTATTAGCTCAGTTGGTAGAGCGCAACAATGGCATTGTTGAGGtCAGCGGTTCGACCCCGCTATGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna35 (268764-268692)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (268731-268729)	Score: 82.13
Seq: GGGGACTTAGCTTAGTTGGTAGAGCGTCTGATTTGCATTCAGAAGGtCAGGAGTTCGAATCTCCTAGTCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna17 (876721-876794)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (876755-876757)	Score: 78.75
Seq: GCACCAGTAGCTCAGTCGGAtAGAGTACCTGGCTACGAACCAGGTGGtCAGAGGTTCGAGTCCTCTCTGGTGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna8 (461850-461923)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (461884-461886)	Score: 60.56
Seq: GTCCTCGTAGCTCAGCAGGAtAGAGCGGTTGCCTCCTAAGCAGCAGGcCATGCGTTCGAATCGCATCGAGGACG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (676585-676658)	Length: 74 bp
Type: Arg	Anticodon: TCG at 35-37 (676619-676621)	Score: 75.86
Seq: GCACCGATAGCTCAATTGGAtAGAGTACCTGGCTTCGGACCAGGTGGtTGGAGGTTCGAGCCCTCTTCGGTGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (806734-806662)	Length: 73 bp
Type: Arg	Anticodon: TCT at 34-36 (806701-806699)	Score: 85.99
Seq: GGACCGATAGCTCAGTGGAtAGAGCATTCGCCTTCTAAGCGAATGGtCGCAGGTTCGAGTCCTGCTCGGTCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna37 (164100-164029)	Length: 72 bp
Type: Asn	Anticodon: GTT at 33-35 (164068-164066)	Score: 75.21
Seq: TCCGGAGTAGCTCAGCGGTAGAGCAGTGGACTGTTAATCCATTGGtCGTTGGTTCGAACCCATCCTCCGGAG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

chr.trna6 (295773-295846)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (295807-295809)	Score: 74.26
Seq: GCGGGAGTAGTTCAATTGGTtAGAGCACCGCCCTGTCAAGGCGGAAGtTGCGGGTTCGACCCCCGTCTCTCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna23 (1029924-1029854)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (1029892-1029890)	Score: 66.18
Seq: GGTGGCATAGCCAAGCGGTAAGGCCGAGGCCTGCAAAGCCTCTAtCCCCGGTTCGATTCCGGGTGCCACCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1084954-1085025)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (1084986-1084988)	Score: 63.17
Seq: TGGGGTGTGGCCAAGCGGTAAGGCAGCGGTTTTTGGTACCGTGCAtCGGAGGTTCGAATCCTTCCACCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (784143-784217)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (784179-784181)	Score: 50.11
Seq: GGCCCCATCGTCTAGCCtGGCccAGGACATCGGATTTTCATTCCGGTAACAGGGGTTCGAATCCCCTTGGGGTCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (960928-960857)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (960896-960894)	Score: 78.97
Seq: GCGGGTGTAGCTCAGTGGTAGAGCGTCACGTTGCCAACGTGAAGGtCGTGAGTTCAAGCCTCATCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (780931-781001)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (780963-780965)	Score: 69.63
Seq: GCGCCCGTAGCTCAATGGTAGAGCTGTAGCCTTCCAAGCTACCGGTGTCAGTTCGATTCTGATCGGGCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (999343-999270)	Length: 74 bp
Type: His	Anticodon: GTG at 35-37 (999309-999307)	Score: 79.24
Seq: GCGAACGTAGCTCAGCTGGTtAGAGCGTCGGATTGTGGTTCCGAAGGtCGCGGGTTCAAGCCCCGTCGTTCGCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (268687-268614)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (268653-268651)	Score: 83.91
Seq: GCGGTTATAGCTCAGTTGGTtAGAGCGCGACACTGATAATGTCGAGGtCCCAAGTTCAAGTCTTGGTAACCGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (671557-671639)	Length: 83 bp
Type: Leu	Anticodon: CAA at 34-36 (671590-671592)	Score: 61.72
Seq: GCCGGTGTGGCGGAATGGTaGACGCGGTAGACTCAAAATCTACTCTTAGCAATAAGGTGTTGGTTCGAGTCCGATCACCGGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna11 (738724-738807)	Length: 84 bp
Type: Leu	Anticodon: CAG at 35-37 (738758-738760)	Score: 58.42
Seq: GCAGCTATGGCGAAATCGGTaGACGCGCTAGATTCAGGTTCTAGTGAGCTTATGCTCaTGGAAGTTCAAGTCTTCTTAGCTGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna30 (679580-679499)	Length: 82 bp
Type: Leu	Anticodon: GAG at 35-37 (679546-679544)	Score: 51.25
Seq: GCGGAAGTGGCGGAATTGGTaTACGCGCTATCTTGAGGTGGTAGTGGAGCTTTCCtTAGGGGTTCGAGTCCCCTCTTTCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>..<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna28 (715292-715210)	Length: 83 bp
Type: Leu	Anticodon: TAA at 34-36 (715259-715257)	Score: 60.66
Seq: GCTCAGATGGTGGAATGGTaGACACTAGGGACTTAAAATCCCTTGGGCGTAGGCCCGTGCAAGTTCGAGTCTTGTTCTGAGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1172269-1172350)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (1172303-1172305)	Score: 62.09
Seq: GCCCAGGTGGTGAAATTGGTaGACACGCTGGATTTAGGATCCAGTGCTTTCGGGCATGTAGGTTCAAGTCCTATCCTGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna14 (784243-784315)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (784276-784278)	Score: 89.48
Seq: GGGTCTTTAGCTCAGCGGTtAGAGCACCTCACTTTTAATGAGGGGGtCGAAGGTTCAAATCCTTCAAGACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (198940-199012)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (198973-198975)	Score: 71.20
Seq: CGCGGGATAGAGTAGTGGTcATCTCGTTGGGCTCATAACCCAAAGGtCGGAGGTTCGAATCCTTCTCCCGCTA
Str: .>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..

chr.trna4 (199028-199101)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (199062-199064)	Score: 72.73
Seq: GGCGGTATAGCTCAGGTGGTtAGAGCAGCAGAATCATAATCTGCGTGtCGTTGGTTCAAATCCGACTACCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna38 (87192-87120)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (87159-87157)	Score: 82.60
Seq: GGGGCGGTAGCTCAGTGGTtAGAGCTGCGGACTCATAACCCGTAGGtCACAGGTTCAAATCCTGTCCGCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (630765-630693)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (630732-630730)	Score: 72.05
Seq: GGCTAGATAGCTCAGATGGTAGAGCAGAGGATTGAAGATCCTTGTGtCGTCGGTTCGATCCCGGCTCTGGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (843247-843320)	Length: 74 bp
Type: Pro	Anticodon: GGG at 35-37 (843281-843283)	Score: 63.89
Seq: CTGGGTGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGGGgCGGAGGTTCAAATCCTCTCATCCAGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (409557-409631)	Length: 75 bp
Type: Pro	Anticodon: TGG at 36-38 (409592-409594)	Score: 80.24
Seq: CGGAGTATAGCGCAGCTtGGTtAGCGCGGTTGCTTTGGGAGCAATAGGtCGGGGGTTCGAATCCCTCTACTCCGA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (1226363-1226277)	Length: 87 bp
Type: Ser	Anticodon: CGA at 35-37 (1226329-1226327)	Score: 60.98
Seq: GGAAGAGTGGCAGAGTGGTcgAATGCGTCTGATTCGAAATCAGAAGTTCTCTTACAGGAACCAGGGGTTCGAATCCCTTCTCTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>......<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna29 (707762-707675)	Length: 88 bp
Type: Ser	Anticodon: GCT at 35-37 (707728-707726)	Score: 56.02
Seq: GGAAAGATGACTGAGTGGTcgAAAGTACGTCCCTGCTAAGGACGCGTACCCCTAAAGGGTACCGAGGGTTCGAATCCCTCTCTTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna32 (626307-626221)	Length: 87 bp
Type: Ser	Anticodon: GGA at 35-37 (626273-626271)	Score: 64.95
Seq: GGAGAGATGTCCGAGTGGCttAAGGAGCACGCTTGGAAAGCGTGTGTGCGTTAACGCGTACCGTGGGTTCGAATCCCACTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna19 (1138440-1138524)	Length: 85 bp
Type: Ser	Anticodon: TGA at 35-37 (1138474-1138476)	Score: 70.17
Seq: GGAAGAATGGCAGAGCGGTttAATGCACCTGTCTTGAAAACAGGAGACCTGAAAGGGTCCGGGGGTTCGAATCCCTCTTCTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna27 (786101-786029)	Length: 73 bp
Type: Thr	Anticodon: CGT at 34-36 (786068-786066)	Score: 75.64
Seq: GCCTAAATAGCTCAGTTGGTAGAGCAACACATTCGTAACGTGTAGGtCGTCGGTTCGATCCCGGCTTTGGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna1 (89327-89398)	Length: 72 bp
Type: Thr	Anticodon: GGT at 33-35 (89359-89361)	Score: 82.61
Seq: GCCCAGATAGCTCAGTGGTAGAGCACTTGCATGGTAAGCAAGCGGtCGTAGGTTCAATTCCTATTCTGGGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna33 (293099-293027)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (293066-293064)	Score: 80.09
Seq: GCTGGAGTAGCTCAATTGGCAGAGCATTCGATTTGTAATCGAACGGtTGAGGGTTCAATTCCTTTCTCCAGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna2 (90668-90740)	Length: 73 bp
Type: Trp	Anticodon: CCA at 34-36 (90701-90703)	Score: 76.03
Seq: GGGTGTGTAGCTTAGCTGGTAGAGCAGTGGCCTCCAAAGCCGCCGGtCGGGGGTTCGATTCCCTTCGCACCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (293021-292939)	Length: 83 bp
Type: Tyr	Anticodon: GTA at 35-37 (292987-292985)	Score: 54.34
Seq: GGGGGTGTCGCATAGTGGTcaATTGCATCGGACTGTAAATCCGGCTCCTTACGGATaCGTTGGTTCAAATCCAGCCACCCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1133867-1133794)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (1133833-1133831)	Score: 72.25
Seq: GGGGTATTAGCTCAGTTGGTtAGAGCGTCACGTTGACATCGTGAAGGtCAGCTGTTCAAGTCAGCTATATCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (295697-295769)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (295730-295732)	Score: 78.56
Seq: GGATGCGTAGCTCAGCGGTtAGAGCACCTGTCTTACACACAGGGGGtCATAGGTTCAAATCCTGTCGTGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.