tRNAscan-SE Analysis of the Chlamydophila pneumoniae J138 Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	89327	89398	Thr	GGT	0	0	82.61	60.61	22.00	Both
chr	2	90668	90740	Trp	CCA	0	0	76.03	64.56	11.47	Both
chr	3	198940	199012	Met	CAT	0	0	71.20	43.91	27.29	Both
chr	4	199028	199101	Met	CAT	0	0	72.73	54.07	18.66	Both
chr	5	295697	295769	Val	TAC	0	0	78.56	64.68	13.88	Both
chr	6	295773	295846	Asp	GTC	0	0	74.26	62.06	12.20	Both
chr	7	409557	409631	Pro	TGG	0	0	80.24	56.26	23.98	Both
chr	8	461850	461923	Arg	CCT	0	0	60.56	30.60	29.96	Both
chr	9	671557	671639	Leu	CAA	0	0	61.72	33.25	28.47	Both
chr	10	676585	676658	Arg	TCG	0	0	75.86	55.35	20.51	Both
chr	11	738724	738807	Leu	CAG	0	0	58.42	25.29	33.13	Both
chr	12	780931	781001	Gly	TCC	0	0	69.63	43.72	25.91	Both
chr	13	784143	784217	Glu	TTC	0	0	50.11	31.25	18.86	Both
chr	14	784243	784315	Lys	TTT	0	0	89.48	67.19	22.29	Both
chr	15	835440	835512	Ala	GGC	0	0	72.48	52.03	20.45	Both
chr	16	843247	843320	Pro	GGG	0	0	63.89	41.70	22.19	Both
chr	17	876721	876794	Arg	ACG	0	0	78.75	57.60	21.15	Both
chr	18	1084954	1085025	Gln	TTG	0	0	63.17	38.77	24.40	Both
chr	19	1138440	1138524	Ser	TGA	0	0	70.17	33.75	36.42	Both
chr	20	1172269	1172350	Leu	TAG	0	0	62.09	35.05	27.04	Both
chr	21	1226363	1226277	Ser	CGA	0	0	60.98	27.97	33.01	Both
chr	22	1133867	1133794	Val	GAC	0	0	72.25	40.23	32.02	Both
chr	23	1029924	1029854	Cys	GCA	0	0	66.18	34.50	31.68	Both
chr	24	999343	999270	His	GTG	0	0	79.24	58.01	21.23	Both
chr	25	960928	960857	Gly	GCC	0	0	78.97	53.95	25.02	Both
chr	26	806734	806662	Arg	TCT	0	0	85.99	63.55	22.44	Both
chr	27	786101	786029	Thr	CGT	0	0	75.64	59.41	16.23	Both
chr	28	715292	715210	Leu	TAA	0	0	60.66	21.43	39.23	Both
chr	29	707762	707675	Ser	GCT	0	0	56.02	19.48	36.54	Both
chr	30	679580	679499	Leu	GAG	0	0	51.25	24.30	26.95	Both
chr	31	630765	630693	Phe	GAA	0	0	72.05	54.45	17.60	Both
chr	32	626307	626221	Ser	GGA	0	0	64.95	31.13	33.82	Both
chr	33	293099	293027	Thr	TGT	0	0	80.09	59.68	20.41	Both
chr	34	293021	292939	Tyr	GTA	0	0	54.34	31.43	22.91	Both
chr	35	268764	268692	Ala	TGC	0	0	82.13	61.31	20.82	Both
chr	36	268687	268614	Ile	GAT	0	0	83.91	51.91	32.00	Both
chr	37	164100	164029	Asn	GTT	0	0	75.21	54.68	20.53	Both
chr	38	87192	87120	Met	CAT	0	0	82.60	69.61	12.99	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.