tRNAscan-SE Analysis of the Chlamydophila pneumoniae CWL029 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chr.trna15 (836119-836191)	Length: 73 bp
Type: Ala	Anticodon: GGC at 34-36 (836152-836154)	Score: 72.48
Seq: GGGGTATTAGCTCAGTTGGTAGAGCGCAACAATGGCATTGTTGAGGtCAGCGGTTCGACCCCGCTATGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna35 (269142-269070)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (269109-269107)	Score: 82.13
Seq: GGGGACTTAGCTTAGTTGGTAGAGCGTCTGATTTGCATTCAGAAGGtCAGGAGTTCGAATCTCCTAGTCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna17 (877400-877473)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (877434-877436)	Score: 78.75
Seq: GCACCAGTAGCTCAGTCGGAtAGAGTACCTGGCTACGAACCAGGTGGtCAGAGGTTCGAGTCCTCTCTGGTGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna8 (462141-462214)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (462175-462177)	Score: 60.56
Seq: GTCCTCGTAGCTCAGCAGGAtAGAGCGGTTGCCTCCTAAGCAGCAGGcCATGCGTTCGAATCGCATCGAGGACG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (677264-677337)	Length: 74 bp
Type: Arg	Anticodon: TCG at 35-37 (677298-677300)	Score: 75.86
Seq: GCACCGATAGCTCAATTGGAtAGAGTACCTGGCTTCGGACCAGGTGGtTGGAGGTTCGAGCCCTCTTCGGTGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (807413-807341)	Length: 73 bp
Type: Arg	Anticodon: TCT at 34-36 (807380-807378)	Score: 85.99
Seq: GGACCGATAGCTCAGTGGAtAGAGCATTCGCCTTCTAAGCGAATGGtCGCAGGTTCGAGTCCTGCTCGGTCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna37 (164389-164318)	Length: 72 bp
Type: Asn	Anticodon: GTT at 33-35 (164357-164355)	Score: 75.21
Seq: TCCGGAGTAGCTCAGCGGTAGAGCAGTGGACTGTTAATCCATTGGtCGTTGGTTCGAACCCATCCTCCGGAG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

chr.trna6 (296151-296224)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (296185-296187)	Score: 74.26
Seq: GCGGGAGTAGTTCAATTGGTtAGAGCACCGCCCTGTCAAGGCGGAAGtTGCGGGTTCGACCCCCGTCTCTCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna23 (1030603-1030533)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (1030571-1030569)	Score: 66.18
Seq: GGTGGCATAGCCAAGCGGTAAGGCCGAGGCCTGCAAAGCCTCTAtCCCCGGTTCGATTCCGGGTGCCACCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1085605-1085676)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (1085637-1085639)	Score: 63.17
Seq: TGGGGTGTGGCCAAGCGGTAAGGCAGCGGTTTTTGGTACCGTGCAtCGGAGGTTCGAATCCTTCCACCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (784822-784896)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (784858-784860)	Score: 50.11
Seq: GGCCCCATCGTCTAGCCtGGCccAGGACATCGGATTTTCATTCCGGTAACAGGGGTTCGAATCCCCTTGGGGTCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (961607-961536)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (961575-961573)	Score: 78.97
Seq: GCGGGTGTAGCTCAGTGGTAGAGCGTCACGTTGCCAACGTGAAGGtCGTGAGTTCAAGCCTCATCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (781610-781680)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (781642-781644)	Score: 69.63
Seq: GCGCCCGTAGCTCAATGGTAGAGCTGTAGCCTTCCAAGCTACCGGTGTCAGTTCGATTCTGATCGGGCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (1000022-999949)	Length: 74 bp
Type: His	Anticodon: GTG at 35-37 (999988-999986)	Score: 79.24
Seq: GCGAACGTAGCTCAGCTGGTtAGAGCGTCGGATTGTGGTTCCGAAGGtCGCGGGTTCAAGCCCCGTCGTTCGCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (269065-268992)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (269031-269029)	Score: 83.91
Seq: GCGGTTATAGCTCAGTTGGTtAGAGCGCGACACTGATAATGTCGAGGtCCCAAGTTCAAGTCTTGGTAACCGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (672236-672318)	Length: 83 bp
Type: Leu	Anticodon: CAA at 34-36 (672269-672271)	Score: 61.72
Seq: GCCGGTGTGGCGGAATGGTaGACGCGGTAGACTCAAAATCTACTCTTAGCAATAAGGTGTTGGTTCGAGTCCGATCACCGGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna11 (739403-739486)	Length: 84 bp
Type: Leu	Anticodon: CAG at 35-37 (739437-739439)	Score: 58.42
Seq: GCAGCTATGGCGAAATCGGTaGACGCGCTAGATTCAGGTTCTAGTGAGCTTATGCTCaTGGAAGTTCAAGTCTTCTTAGCTGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna30 (680259-680178)	Length: 82 bp
Type: Leu	Anticodon: GAG at 35-37 (680225-680223)	Score: 51.25
Seq: GCGGAAGTGGCGGAATTGGTaTACGCGCTATCTTGAGGTGGTAGTGGAGCTTTCCtTAGGGGTTCGAGTCCCCTCTTTCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>..<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna28 (715971-715889)	Length: 83 bp
Type: Leu	Anticodon: TAA at 34-36 (715938-715936)	Score: 60.66
Seq: GCTCAGATGGTGGAATGGTaGACACTAGGGACTTAAAATCCCTTGGGCGTAGGCCCGTGCAAGTTCGAGTCTTGTTCTGAGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1175863-1175944)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (1175897-1175899)	Score: 62.09
Seq: GCCCAGGTGGTGAAATTGGTaGACACGCTGGATTTAGGATCCAGTGCTTTCGGGCATGTAGGTTCAAGTCCTATCCTGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna14 (784922-784994)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (784955-784957)	Score: 89.48
Seq: GGGTCTTTAGCTCAGCGGTtAGAGCACCTCACTTTTAATGAGGGGGtCGAAGGTTCAAATCCTTCAAGACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (199229-199301)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (199262-199264)	Score: 71.20
Seq: CGCGGGATAGAGTAGTGGTcATCTCGTTGGGCTCATAACCCAAAGGtCGGAGGTTCGAATCCTTCTCCCGCTA
Str: .>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..

chr.trna4 (199317-199390)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (199351-199353)	Score: 72.73
Seq: GGCGGTATAGCTCAGGTGGTtAGAGCAGCAGAATCATAATCTGCGTGtCGTTGGTTCAAATCCGACTACCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna38 (87522-87450)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (87489-87487)	Score: 82.60
Seq: GGGGCGGTAGCTCAGTGGTtAGAGCTGCGGACTCATAACCCGTAGGtCACAGGTTCAAATCCTGTCCGCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (631445-631373)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (631412-631410)	Score: 72.05
Seq: GGCTAGATAGCTCAGATGGTAGAGCAGAGGATTGAAGATCCTTGTGtCGTCGGTTCGATCCCGGCTCTGGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (843926-843999)	Length: 74 bp
Type: Pro	Anticodon: GGG at 35-37 (843960-843962)	Score: 63.89
Seq: CTGGGTGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGGGgCGGAGGTTCAAATCCTCTCATCCAGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (409848-409922)	Length: 75 bp
Type: Pro	Anticodon: TGG at 36-38 (409883-409885)	Score: 80.24
Seq: CGGAGTATAGCGCAGCTtGGTtAGCGCGGTTGCTTTGGGAGCAATAGGtCGGGGGTTCGAATCCCTCTACTCCGA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (1230028-1229942)	Length: 87 bp
Type: Ser	Anticodon: CGA at 35-37 (1229994-1229992)	Score: 60.98
Seq: GGAAGAGTGGCAGAGTGGTcgAATGCGTCTGATTCGAAATCAGAAGTTCTCTTACAGGAACCAGGGGTTCGAATCCCTTCTCTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>......<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna29 (708441-708354)	Length: 88 bp
Type: Ser	Anticodon: GCT at 35-37 (708407-708405)	Score: 56.02
Seq: GGAAAGATGACTGAGTGGTcgAAAGTACGTCCCTGCTAAGGACGCGTACCCCTAAAGGGTACCGAGGGTTCGAATCCCTCTCTTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna32 (626987-626901)	Length: 87 bp
Type: Ser	Anticodon: GGA at 35-37 (626953-626951)	Score: 64.95
Seq: GGAGAGATGTCCGAGTGGCttAAGGAGCACGCTTGGAAAGCGTGTGTGCGTTAACGCGTACCGTGGGTTCGAATCCCACTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna19 (1142034-1142118)	Length: 85 bp
Type: Ser	Anticodon: TGA at 35-37 (1142068-1142070)	Score: 70.17
Seq: GGAAGAATGGCAGAGCGGTttAATGCACCTGTCTTGAAAACAGGAGACCTGAAAGGGTCCGGGGGTTCGAATCCCTCTTCTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna27 (786780-786708)	Length: 73 bp
Type: Thr	Anticodon: CGT at 34-36 (786747-786745)	Score: 75.64
Seq: GCCTAAATAGCTCAGTTGGTAGAGCAACACATTCGTAACGTGTAGGtCGTCGGTTCGATCCCGGCTTTGGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna1 (89657-89728)	Length: 72 bp
Type: Thr	Anticodon: GGT at 33-35 (89689-89691)	Score: 82.61
Seq: GCCCAGATAGCTCAGTGGTAGAGCACTTGCATGGTAAGCAAGCGGtCGTAGGTTCAATTCCTATTCTGGGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna33 (293477-293405)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (293444-293442)	Score: 80.09
Seq: GCTGGAGTAGCTCAATTGGCAGAGCATTCGATTTGTAATCGAACGGtTGAGGGTTCAATTCCTTTCTCCAGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna2 (90998-91070)	Length: 73 bp
Type: Trp	Anticodon: CCA at 34-36 (91031-91033)	Score: 76.03
Seq: GGGTGTGTAGCTTAGCTGGTAGAGCAGTGGCCTCCAAAGCCGCCGGtCGGGGGTTCGATTCCCTTCGCACCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (293399-293317)	Length: 83 bp
Type: Tyr	Anticodon: GTA at 35-37 (293365-293363)	Score: 54.34
Seq: GGGGGTGTCGCATAGTGGTcaATTGCATCGGACTGTAAATCCGGCTCCTTACGGATaCGTTGGTTCAAATCCAGCCACCCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1137462-1137389)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (1137428-1137426)	Score: 72.25
Seq: GGGGTATTAGCTCAGTTGGTtAGAGCGTCACGTTGACATCGTGAAGGtCAGCTGTTCAAGTCAGCTATATCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (296075-296147)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (296108-296110)	Score: 78.56
Seq: GGATGCGTAGCTCAGCGGTtAGAGCACCTGTCTTACACACAGGGGGtCATAGGTTCAAATCCTGTCGTGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.