tRNAscan-SE Analysis of the Chlamydophila pneumoniae CWL029 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	15	836119	836191	View	Ala	GGC	0	0	72.48	52.03	20.45	Both

chr	35	269142	269070	View	Ala	TGC	0	0	82.13	61.31	20.82	Both

chr	17	877400	877473	View	Arg	ACG	0	0	78.75	57.60	21.15	Both

chr	8	462141	462214	View	Arg	CCT	0	0	60.56	30.60	29.96	Both

chr	10	677264	677337	View	Arg	TCG	0	0	75.86	55.35	20.51	Both

chr	26	807413	807341	View	Arg	TCT	0	0	85.99	63.55	22.44	Both

chr	37	164389	164318	View	Asn	GTT	0	0	75.21	54.68	20.53	Both

chr	6	296151	296224	View	Asp	GTC	0	0	74.26	62.06	12.20	Both

chr	23	1030603	1030533	View	Cys	GCA	0	0	66.18	34.50	31.68	Both

chr	18	1085605	1085676	View	Gln	TTG	0	0	63.17	38.77	24.40	Both

chr	13	784822	784896	View	Glu	TTC	0	0	50.11	31.25	18.86	Both

chr	25	961607	961536	View	Gly	GCC	0	0	78.97	53.95	25.02	Both

chr	12	781610	781680	View	Gly	TCC	0	0	69.63	43.72	25.91	Both

chr	24	1000022	999949	View	His	GTG	0	0	79.24	58.01	21.23	Both

chr	36	269065	268992	View	Ile	GAT	0	0	83.91	51.91	32.00	Both

chr	9	672236	672318	View	Leu	CAA	0	0	61.72	33.25	28.47	Both

chr	11	739403	739486	View	Leu	CAG	0	0	58.42	25.29	33.13	Both

chr	30	680259	680178	View	Leu	GAG	0	0	51.25	24.30	26.95	Both

chr	28	715971	715889	View	Leu	TAA	0	0	60.66	21.43	39.23	Both

chr	20	1175863	1175944	View	Leu	TAG	0	0	62.09	35.05	27.04	Both

chr	14	784922	784994	View	Lys	TTT	0	0	89.48	67.19	22.29	Both

chr	3	199229	199301	View	Met	CAT	0	0	71.20	43.91	27.29	Both
chr	4	199317	199390	View	Met	CAT	0	0	72.73	54.07	18.66	Both
chr	38	87522	87450	View	Met	CAT	0	0	82.60	69.61	12.99	Both

chr	31	631445	631373	View	Phe	GAA	0	0	72.05	54.45	17.60	Both

chr	16	843926	843999	View	Pro	GGG	0	0	63.89	41.70	22.19	Both

chr	7	409848	409922	View	Pro	TGG	0	0	80.24	56.26	23.98	Both

chr	21	1230028	1229942	View	Ser	CGA	0	0	60.98	27.97	33.01	Both

chr	29	708441	708354	View	Ser	GCT	0	0	56.02	19.48	36.54	Both

chr	32	626987	626901	View	Ser	GGA	0	0	64.95	31.13	33.82	Both

chr	19	1142034	1142118	View	Ser	TGA	0	0	70.17	33.75	36.42	Both

chr	27	786780	786708	View	Thr	CGT	0	0	75.64	59.41	16.23	Both

chr	1	89657	89728	View	Thr	GGT	0	0	82.61	60.61	22.00	Both

chr	33	293477	293405	View	Thr	TGT	0	0	80.09	59.68	20.41	Both

chr	2	90998	91070	View	Trp	CCA	0	0	76.03	64.56	11.47	Both

chr	34	293399	293317	View	Tyr	GTA	0	0	54.34	31.43	22.91	Both

chr	22	1137462	1137389	View	Val	GAC	0	0	72.25	40.23	32.02	Both

chr	5	296075	296147	View	Val	TAC	0	0	78.56	64.68	13.88	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.