tRNAscan-SE Analysis of the Chlamydophila pneumoniae AR39 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chr.trna38 (5466-5394)	Length: 73 bp
Type: Ala	Anticodon: GGC at 34-36 (5433-5431)	Score: 72.48
Seq: GGGGTATTAGCTCAGTTGGTAGAGCGCAACAATGGCATTGTTGAGGtCAGCGGTTCGACCCCGCTATGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (572141-572213)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (572174-572176)	Score: 82.13
Seq: GGGGACTTAGCTTAGTTGGTAGAGCGTCTGATTTGCATTCAGAAGGtCAGGAGTTCGAATCTCCTAGTCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1194043-1193970)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (1194009-1194007)	Score: 78.75
Seq: GCACCAGTAGCTCAGTCGGAtAGAGTACCTGGCTACGAACCAGGTGGtCAGAGGTTCGAGTCCTCTCTGGTGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (379056-378983)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (379022-379020)	Score: 60.56
Seq: GTCCTCGTAGCTCAGCAGGAtAGAGCGGTTGCCTCCTAAGCAGCAGGcCATGCGTTCGAATCGCATCGAGGACG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna33 (164321-164248)	Length: 74 bp
Type: Arg	Anticodon: TCG at 35-37 (164287-164285)	Score: 75.86
Seq: GCACCGATAGCTCAATTGGAtAGAGTACCTGGCTTCGGACCAGGTGGtTGGAGGTTCGAGCCCTCTTCGGTGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna1 (34172-34244)	Length: 73 bp
Type: Arg	Anticodon: TCT at 34-36 (34205-34207)	Score: 85.99
Seq: GGACCGATAGCTCAGTGGAtAGAGCATTCGCCTTCTAAGCGAATGGtCGCAGGTTCGAGTCCTGCTCGGTCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (676812-676883)	Length: 72 bp
Type: Asn	Anticodon: GTT at 33-35 (676844-676846)	Score: 75.21
Seq: TCCGGAGTAGCTCAGCGGTAGAGCAGTGGACTGTTAATCCATTGGtCGTTGGTTCGAACCCATCCTCCGGAG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

chr.trna29 (545132-545059)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (545098-545096)	Score: 74.26
Seq: GCGGGAGTAGTTCAATTGGTtAGAGCACCGCCCTGTCAAGGCGGAAGtTGCGGGTTCGACCCCCGTCTCTCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (1040839-1040909)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (1040871-1040873)	Score: 66.18
Seq: GGTGGCATAGCCAAGCGGTAAGGCCGAGGCCTGCAAAGCCTCTAtCCCCGGTTCGATTCCGGGTGCCACCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (985810-985739)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (985778-985776)	Score: 63.17
Seq: TGGGGTGTGGCCAAGCGGTAAGGCAGCGGTTTTTGGTACCGTGCAtCGGAGGTTCGAATCCTTCCACCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (56763-56689)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (56727-56725)	Score: 50.11
Seq: GGCCCCATCGTCTAGCCtGGCccAGGACATCGGATTTTCATTCCGGTAACAGGGGTTCGAATCCCCTTGGGGTCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1109835-1109906)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (1109867-1109869)	Score: 78.97
Seq: GCGGGTGTAGCTCAGTGGTAGAGCGTCACGTTGCCAACGTGAAGGtCGTGAGTTCAAGCCTCATCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna35 (59975-59905)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (59943-59941)	Score: 69.63
Seq: GCGCCCGTAGCTCAATGGTAGAGCTGTAGCCTTCCAAGCTACCGGTGTCAGTTCGATTCTGATCGGGCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna17 (1071420-1071493)	Length: 74 bp
Type: His	Anticodon: GTG at 35-37 (1071454-1071456)	Score: 79.24
Seq: GCGAACGTAGCTCAGCTGGTtAGAGCGTCGGATTGTGGTTCCGAAGGtCGCGGGTTCAAGCCCCGTCGTTCGCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna11 (572218-572291)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (572252-572254)	Score: 83.91
Seq: GCGGTTATAGCTCAGTTGGTtAGAGCGCGACACTGATAATGTCGAGGtCCCAAGTTCAAGTCTTGGTAACCGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna32 (169349-169267)	Length: 83 bp
Type: Leu	Anticodon: CAA at 34-36 (169316-169314)	Score: 61.72
Seq: GCCGGTGTGGCGGAATGGTaGACGCGGTAGACTCAAAATCTACTCTTAGCAATAAGGTGTTGGTTCGAGTCCGATCACCGGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna34 (102182-102099)	Length: 84 bp
Type: Leu	Anticodon: CAG at 35-37 (102148-102146)	Score: 58.42
Seq: GCAGCTATGGCGAAATCGGTaGACGCGCTAGATTCAGGTTCTAGTGAGCTTATGCTCaTGGAAGTTCAAGTCTTCTTAGCTGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna5 (161326-161407)	Length: 82 bp
Type: Leu	Anticodon: GAG at 35-37 (161360-161362)	Score: 51.25
Seq: GCGGAAGTGGCGGAATTGGTaTACGCGCTATCTTGAGGTGGTAGTGGAGCTTTCCtTAGGGGTTCGAGTCCCCTCTTTCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>..<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna3 (125614-125696)	Length: 83 bp
Type: Leu	Anticodon: TAA at 34-36 (125647-125649)	Score: 60.66
Seq: GCTCAGATGGTGGAATGGTaGACACTAGGGACTTAAAATCCCTTGGGCGTAGGCCCGTGCAAGTTCGAGTCTTGTTCTGAGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna23 (895551-895470)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (895517-895515)	Score: 62.09
Seq: GCCCAGGTGGTGAAATTGGTaGACACGCTGGATTTAGGATCCAGTGCTTTCGGGCATGTAGGTTCAAGTCCTATCCTGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna37 (56663-56591)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (56630-56628)	Score: 89.48
Seq: GGGTCTTTAGCTCAGCGGTtAGAGCACCTCACTTTTAATGAGGGGGtCGAAGGTTCAAATCCTTCAAGACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (641972-641900)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (641939-641937)	Score: 71.20
Seq: CGCGGGATAGAGTAGTGGTcATCTCGTTGGGCTCATAACCCAAAGGtCGGAGGTTCGAATCCTTCTCCCGCTA
Str: .>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..

chr.trna27 (641884-641811)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (641850-641848)	Score: 72.73
Seq: GGCGGTATAGCTCAGGTGGTtAGAGCAGCAGAATCATAATCTGCGTGtCGTTGGTTCAAATCCGACTACCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (753680-753752)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (753713-753715)	Score: 82.60
Seq: GGGGCGGTAGCTCAGTGGTtAGAGCTGCGGACTCATAACCCGTAGGtCACAGGTTCAAATCCTGTCCGCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (210140-210212)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (210173-210175)	Score: 72.05
Seq: GGCTAGATAGCTCAGATGGTAGAGCAGAGGATTGAAGATCCTTGTGtCGTCGGTTCGATCCCGGCTCTGGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna19 (1227517-1227444)	Length: 74 bp
Type: Pro	Anticodon: GGG at 35-37 (1227483-1227481)	Score: 63.89
Seq: CTGGGTGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGGGgCGGAGGTTCAAATCCTCTCATCCAGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna30 (431349-431275)	Length: 75 bp
Type: Pro	Anticodon: TGG at 36-38 (431314-431312)	Score: 80.24
Seq: CGGAGTATAGCGCAGCTtGGTtAGCGCGGTTGCTTTGGGAGCAATAGGtCGGGGGTTCGAATCCCTCTACTCCGA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna14 (841403-841489)	Length: 87 bp
Type: Ser	Anticodon: CGA at 35-37 (841437-841439)	Score: 60.98
Seq: GGAAGAGTGGCAGAGTGGTcgAATGCGTCTGATTCGAAATCAGAAGTTCTCTTACAGGAACCAGGGGTTCGAATCCCTTCTCTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>......<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna4 (133144-133231)	Length: 88 bp
Type: Ser	Anticodon: GCT at 35-37 (133178-133180)	Score: 56.02
Seq: GGAAAGATGACTGAGTGGTcgAAAGTACGTCCCTGCTAAGGACGCGTACCCCTAAAGGGTACCGAGGGTTCGAATCCCTCTCTTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna7 (214598-214684)	Length: 87 bp
Type: Ser	Anticodon: GGA at 35-37 (214632-214634)	Score: 64.95
Seq: GGAGAGATGTCCGAGTGGCttAAGGAGCACGCTTGGAAAGCGTGTGTGCGTTAACGCGTACCGTGGGTTCGAATCCCACTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna22 (929380-929296)	Length: 85 bp
Type: Ser	Anticodon: TGA at 35-37 (929346-929344)	Score: 70.17
Seq: GGAAGAATGGCAGAGCGGTttAATGCACCTGTCTTGAAAACAGGAGACCTGAAAGGGTCCGGGGGTTCGAATCCCTCTTCTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna2 (54805-54877)	Length: 73 bp
Type: Thr	Anticodon: CGT at 34-36 (54838-54840)	Score: 75.64
Seq: GCCTAAATAGCTCAGTTGGTAGAGCAACACATTCGTAACGTGTAGGtCGTCGGTTCGATCCCGGCTTTGGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (751545-751474)	Length: 72 bp
Type: Thr	Anticodon: GGT at 33-35 (751513-751511)	Score: 82.61
Seq: GCCCAGATAGCTCAGTGGTAGAGCACTTGCATGGTAAGCAAGCGGtCGTAGGTTCAATTCCTATTCTGGGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna8 (547806-547878)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (547839-547841)	Score: 80.09
Seq: GCTGGAGTAGCTCAATTGGCAGAGCATTCGATTTGTAATCGAACGGtTGAGGGTTCAATTCCTTTCTCCAGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (750204-750132)	Length: 73 bp
Type: Trp	Anticodon: CCA at 34-36 (750171-750169)	Score: 76.03
Seq: GGGTGTGTAGCTTAGCTGGTAGAGCAGTGGCCTCCAAAGCCGCCGGtCGGGGGTTCGATTCCCTTCGCACCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (547884-547966)	Length: 83 bp
Type: Tyr	Anticodon: GTA at 35-37 (547918-547920)	Score: 54.34
Seq: GGGGGTGTCGCATAGTGGTcaATTGCATCGGACTGTAAATCCGGCTCCTTACGGATaCGTTGGTTCAAATCCAGCCACCCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna15 (933953-934026)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (933987-933989)	Score: 72.25
Seq: GGGGTATTAGCTCAGTTGGTtAGAGCGTCACGTTGACATCGTGAAGGtCAGCTGTTCAAGTCAGCTATATCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna28 (545208-545136)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (545175-545173)	Score: 78.56
Seq: GGATGCGTAGCTCAGCGGTtAGAGCACCTGTCTTACACACAGGGGGtCATAGGTTCAAATCCTGTCGTGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.