tRNAscan-SE Analysis of the Chlamydophila pneumoniae AR39 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTATTAGCTCAGTTGGTAGAGCGCAACAATGGCATTGTTGAG...........GtCAGCGGTTCGACCCCGCTATGCTCCA... chr.trna38-AlaGGC Sc: 72.48  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGACTTAGCTTAGTTGGTAGAGCGTCTGATTTGCATTCAGAAG...........GtCAGGAGTTCGAATCTCCTAGTCTCCA... chr.trna10-AlaTGC Sc: 82.13  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCAGTAGCTCAGTCGGAtA.GAGTACCTGGCTACGAACCAGGTG...........GtCAGAGGTTCGAGTCCTCTCTGGTGCG... chr.trna20-ArgACG Sc: 78.75  



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCGATAGCTCAATTGGAtA.GAGTACCTGGCTTCGGACCAGGTG...........GtTGGAGGTTCGAGCCCTCTTCGGTGCG... chr.trna33-ArgTCG Sc: 75.86  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCCTCGTAGCTCAGCAGGAtA.GAGCGGTTGCCTCCTAAGCAGCAG...........GcCATGCGTTCGAATCGCATCGAGGACG... chr.trna31-ArgCCT Sc: 60.56  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCGATAGCTCAGT.GGAtA.GAGCATTCGCCTTCTAAGCGAATG...........GtCGCAGGTTCGAGTCCTGCTCGGTCCG... chr.trna1-ArgTCT Sc: 85.99  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
TCCGGAGTAGCTCAGCGGTA.GAGCAGTGGACTGTTAATCCATTG...........GtCGTTGGTTCGAACCCATCCTCCGGAG... chr.trna12-AsnGTT Sc: 75.21  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTAGTTCAATTGGTtAGAGCACCGCCCTGTCAAGGCGGAA...........GtTGCGGGTTCGACCCCCGTCTCTCGCG... chr.trna29-AspGTC Sc: 74.26  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
GGTGGCATAGCCAAGCGGTA.AGGCCGAGGCCTGCAAAGCCTCT...........AtCCCCGGTTCGATTCCGGG.TGCCACCT... chr.trna16-CysGCA Sc: 66.18  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTGTGGCCAAGCGGTA.AGGCAGCGGTTTTTGGTACCGTGC...........AtCGGAGGTTCGAATCCTTCCACCCCAG... chr.trna21-GlnTTG Sc: 63.17  



Glu tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCCATCGTCTAGCCtGGCccAGGACATCGGATTTTCATTCCGGTA...........ACAGGGGTTCGAATCCCCTTGGGGTCA... chr.trna36-GluTTC Sc: 50.11  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGTGGTA.GAGCGTCACGTTGCCAACGTGAAG...........GtCGTGAGTTCAAGCCTCATCACCCGCT... chr.trna18-GlyGCC Sc: 78.97  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAATGGTA.GAGCTGTAGCCTTCCAAGCTACCG...........G.TGTCAGTTCGATTCTGATCGGGCGCT... chr.trna35-GlyTCC Sc: 69.63  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGAACGTAGCTCAGCTGGTtAGAGCGTCGGATTGTGGTTCCGAAG...........GtCGCGGGTTCAAGCCCCGTCGTTCGCC... chr.trna17-HisGTG Sc: 79.24  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGTTATAGCTCAGTTGGTtAGAGCGCGACACTGATAATGTCGAG...........GtCCCAAGTTCAAGTCTTGGTAACCGCA... chr.trna11-IleGAT Sc: 83.91  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGAAGTGGCGGAATTGGTaT.ACGCGCTATCTTGAGGTGGTAGTGGAGC...........TTTCCtTAGGGGTTCGAGTCCCCT.CTTTCGCA... chr.trna5-LeuGAG Sc: 51.25  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<....
GCAGCTATGGCGAAATCGGTaG.ACGCGCTAGATTCAGGTTCTAGTGAGC..TTAT.......GCTCaTGGAAGTTCAAGTCTTCT.TAGCTGCA... chr.trna34-LeuCAG Sc: 58.42  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGTGAAATTGGTaG.ACACGCTGGATTTAGGATCCAGT.GCTTT.........CGGGCA.TGTAGGTTCAAGTCCTAT.CCTGGGCA... chr.trna23-LeuTAG Sc: 62.09  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGTGTGGCGGAAT.GGTaG.ACGCGGTAGACTCAAAATCTACT.CTTA.GCAA......TAAGG.TGTTGGTTCGAGTCCGAT.CACCGGCA... chr.trna32-LeuCAA Sc: 61.72  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<....
GCTCAGATGGTGGAAT.GGTaG.ACACTAGGGACTTAAAATCCCTT.GGGC.GTAG......GCCCG.TGCAAGTTCGAGTCTTGT.TCTGAGCA... chr.trna3-LeuTAA Sc: 60.66  



Lys tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTTTAGCTCAGCGGTtA.GAGCACCTCACTTTTAATGAGGGG...........GtCGAAGGTTCAAATCCTTCAAGACCCA... chr.trna37-LysTTT Sc: 89.48  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCGGTAGCTCAGT.GGTtA.GAGCTGCGGACTCATAACCCGTAG...........GtCACAGGTTCAAATCCTGTCCGCCCCA... chr.trna13-MetCAT Sc: 82.60  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGTATAGCTCAGGTGGTtA.GAGCAGCAGAATCATAATCTGCGT...........GtCGTTGGTTCAAATCCGACTACCGCTA... chr.trna27-MetCAT Sc: 72.73  
.>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGATAGAGTAGT.GGTcA.TCTCGTTGGGCTCATAACCCAAAG...........GtCGGAGGTTCGAATCCTTCTCCCGCTA... chr.trna26-MetCAT Sc: 71.20  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTAGATAGCTCAGATGGTAGAGCAGAGGATTGAAGATCCTTGT...........GtCGTCGGTTCGATCCCGGCTCTGGCCA... chr.trna6-PheGAA Sc: 72.05  



Pro tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CTGGGTGTAGCGCAGCCtGGT.AGCGCACTTGCATGGGGTGCAAGGG...........GgCGGAGGTTCAAATCCTCTCATCCAGA... chr.trna19-ProGGG Sc: 63.89  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTATAGCGCAGCTtGGTtAGCGCGGTTGCTTTGGGAGCAATAG...........GtCGGGGGTTCGAATCCCTCTACTCCGA... chr.trna30-ProTGG Sc: 80.24  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGTCCGAGTGGCttA.AGGAGCACGCTTGGAAAGCGTGT.GTGCGT.TAAC.GCGTAC.CGTGGGTTCGAATCCCAC..TCTCTCCG... chr.trna7-SerGGA Sc: 64.95  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAAGAGTGGCAGAGTGGTcgA.ATGCGTCTGATTCGAAATCAGAA.GTTCTC.TTAC.AGGAAC.CAGGGGTTCGAATCCCTT..CTCTTCCG... chr.trna14-SerCGA Sc: 60.98  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAAGAATGGCAGAGCGGTttA.ATGCACCTGTCTTGAAAACAGGAGACCT...GAAA...GGGTCCGGGGGTTCGAATCCCTC..TTCTTCCG... chr.trna22-SerTGA Sc: 70.17  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAAAGATGACTGAGTGGTcgA.AAGTACGTCCCTGCTAAGGACGC.GTACCCCTAAA.GGGTAC.CGAGGGTTCGAATCCCTC..TCTTTCCG... chr.trna4-SerGCT Sc: 56.02  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCAGATAGCTCAGT.GGTA.GAGCACTTGCATGGTAAGCAAGCG...........GtCGTAGGTTCAATTCCTATTCTGGGCA... chr.trna24-ThrGGT Sc: 82.61  

>>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTAAATAGCTCAGTTGGTA.GAGCAACACATTCGTAACGTGTAG...........GtCGTCGGTTCGATCCCGGCTTTGGGCA... chr.trna2-ThrCGT Sc: 75.64  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGAGTAGCTCAATTGGCA.GAGCATTCGATTTGTAATCGAACG...........GtTGAGGGTTCAATTCCTTTCTCCAGCA... chr.trna8-ThrTGT Sc: 80.09  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGTGTAGCTTAGCTGGTAGAGCAGTGGCCTCCAAAGCCGCCG...........GtCGGGGGTTCGATTCCCTTCGCACCCG... chr.trna25-TrpCCA Sc: 76.03  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGGGGTGTCGCATAGTGGTcaA.TTGCATCGGACTGTAAATCCGGCTCCTTAC....GGATaCGTTGGTTCAAATCCAGC.CACCCCCA... chr.trna9-TyrGTA Sc: 54.34  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTATTAGCTCAGTTGGTtA.GAGCGTCACGTTGACATCGTGAAG...........GtCAGCTGTTCAAGTCAGCTATATCCCA... chr.trna15-ValGAC Sc: 72.25  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGATGCGTAGCTCAGC.GGTtA.GAGCACCTGTCTTACACACAGGGG...........GtCATAGGTTCAAATCCTGTCGTGTCCA... chr.trna28-ValTAC Sc: 78.56

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.