tRNAscan-SE Analysis of the Chlamydia muridarum Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	32623	32695	Arg	TCT	0	0	87.30	66.09	21.21	Both
chr	2	53171	53243	Thr	CGT	0	0	76.52	61.10	15.42	Both
chr	3	216411	216482	Gln	TTG	0	0	63.88	37.29	26.59	Both
chr	4	263371	263455	Ser	TGA	0	0	70.17	33.75	36.42	Both
chr	5	297053	297134	Leu	TAG	0	0	61.09	34.43	26.66	Both
chr	6	479293	479365	Thr	TGT	0	0	80.09	59.68	20.41	Both
chr	7	479373	479455	Tyr	GTA	0	0	56.66	29.14	27.52	Both
chr	8	718864	718936	Met	CAT	0	0	78.30	60.47	17.83	Both
chr	9	763201	763287	Ser	CGA	0	0	62.46	33.79	28.67	Both
chr	10	893599	893681	Leu	CAA	0	0	63.24	34.23	29.01	Both
chr	11	896399	896472	Arg	TCG	0	0	75.01	54.50	20.51	Both
chr	12	958000	958086	Leu	CAG	0	0	56.15	25.21	30.94	Both
chr	13	1071248	1071321	Pro	GGG	0	0	67.00	40.95	26.05	Both
chr	14	1035374	1035302	Arg	ACG	0	0	76.99	55.84	21.15	Both
chr	15	934391	934309	Leu	TAA	0	0	58.49	19.26	39.23	Both
chr	16	927358	927270	Ser	GCT	0	0	59.15	21.30	37.85	Both
chr	17	898609	898528	Leu	GAG	0	0	51.25	24.30	26.95	Both
chr	18	842701	842629	Phe	GAA	0	0	76.09	58.49	17.60	Both
chr	19	837963	837877	Ser	GGA	0	0	65.29	32.02	33.27	Both
chr	20	713652	713581	Thr	GGT	0	0	75.30	57.01	18.29	Both
chr	21	712297	712225	Trp	CCA	0	0	70.24	58.64	11.60	Both
chr	22	601706	601634	Val	TAC	0	0	78.56	64.68	13.88	Both
chr	23	601626	601553	Asp	GTC	0	0	77.52	65.32	12.20	Both
chr	24	582970	582898	Met	CAT	0	0	71.20	43.91	27.29	Both
chr	25	582881	582808	Met	CAT	0	0	73.61	55.77	17.84	Both
chr	26	550765	550693	Ala	TGC	0	0	82.13	61.31	20.82	Both
chr	27	550688	550615	Ile	GAT	0	0	83.91	51.91	32.00	Both
chr	28	390146	390072	Pro	TGG	0	0	78.14	54.16	23.98	Both
chr	29	364731	364660	Asn	GTT	0	0	75.21	54.68	20.53	Both
chr	30	258680	258607	Val	GAC	0	0	72.25	40.23	32.02	Both
chr	31	167619	167549	Cys	GCA	0	0	61.76	30.07	31.69	Both
chr	32	133288	133215	His	GTG	0	0	81.22	59.99	21.23	Both
chr	33	94367	94296	Gly	GCC	0	0	75.06	55.31	19.75	Both
chr	34	58425	58355	Gly	TCC	0	0	69.63	43.72	25.91	Both
chr	35	55189	55115	Glu	TTC	0	0	50.11	31.25	18.86	Both
chr	36	55097	55025	Lys	TTT	0	0	83.84	66.79	17.05	Both
chr	37	5490	5418	Ala	GGC	0	0	74.81	54.35	20.46	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.