tRNAscan-SE Analysis of the Chlamydophila caviae Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	38	5284	5212	Ala	GGC	0	0	75.26	54.81	20.45	Both

chr	25	674053	673981	Ala	TGC	0	0	78.02	57.19	20.83	Both

chr	17	1138112	1138040	Arg	ACG	0	0	76.45	55.31	21.14	Both

chr	30	428305	428232	Arg	CCT	0	0	61.41	31.45	29.96	Both

chr	33	162141	162068	Arg	TCG	0	0	75.50	53.76	21.74	Both

chr	1	31667	31739	Arg	TCT	0	0	85.99	63.55	22.44	Both

chr	10	738275	738346	Asn	GTT	0	0	75.21	54.68	20.53	Both

chr	28	590195	590122	Asp	GTC	0	0	76.40	64.20	12.20	Both

chr	13	992926	992996	Cys	GCA	0	0	66.18	34.50	31.68	Both

chr	18	943470	943399	Gln	TTG	0	0	65.58	41.99	23.59	Both

chr	36	54571	54497	Glu	TTC	0	0	50.11	31.25	18.86	Both

chr	15	1064489	1064560	Gly	GCC	0	0	75.06	55.31	19.75	Both

chr	35	57805	57735	Gly	TCC	0	0	69.63	43.72	25.91	Both

chr	14	1026352	1026425	His	GTG	0	0	80.09	58.86	21.23	Both

chr	26	673975	673902	Ile	GAT	0	0	83.91	51.91	32.00	Both

chr	32	168159	168077	Leu	CAA	0	0	64.83	31.91	32.92	Both

chr	34	98416	98333	Leu	CAG	0	0	57.86	22.62	35.24	Both

chr	5	159272	159353	Leu	GAG	0	0	51.25	24.30	26.95	Both

chr	3	122375	122457	Leu	TAA	0	0	61.02	21.79	39.23	Both

chr	20	845065	844984	Leu	TAG	0	0	62.58	34.84	27.74	Both

chr	37	54470	54398	Lys	TTT	0	0	90.95	69.98	20.97	Both

chr	23	694814	694742	Met	CAT	0	0	71.20	43.91	27.29	Both
chr	24	694721	694648	Met	CAT	0	0	73.33	54.67	18.66	Both
chr	11	809848	809920	Met	CAT	0	0	83.78	69.22	14.56	Both

chr	6	209996	210068	Phe	GAA	0	0	74.36	57.39	16.97	Both

chr	16	1171209	1171136	Pro	GGG	0	0	67.73	42.31	25.42	Both

chr	29	482178	482104	Pro	TGG	0	0	78.14	54.16	23.98	Both

chr	31	350084	349998	Ser	CGA	0	0	61.89	30.12	31.77	Both

chr	4	130116	130203	Ser	GCT	0	0	56.02	19.48	36.54	Both

chr	7	214462	214551	Ser	GGA	0	0	63.10	33.51	29.59	Both

chr	19	879184	879100	Ser	TGA	0	0	70.17	33.75	36.42	Both

chr	2	52238	52310	Thr	CGT	0	0	76.52	61.10	15.42	Both

chr	21	807750	807679	Thr	GGT	0	0	82.61	60.61	22.00	Both

chr	8	594018	594090	Thr	TGT	0	0	81.03	60.62	20.41	Both

chr	22	806398	806326	Trp	CCA	0	0	73.32	60.62	12.70	Both

chr	9	594097	594179	Tyr	GTA	0	0	56.66	29.14	27.52	Both

chr	12	883805	883878	Val	GAC	0	0	72.25	40.23	32.02	Both

chr	27	590271	590199	Val	TAC	0	0	78.56	64.68	13.88	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.