tRNAscan-SE Analysis of the Chlamydophila caviae Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTATTAGCTCAATTGGTAGAGCGCAACAATGGCATTGTTGAG...........GtCAGCGGTTCGATTCCGCTATGCTCCA... chr.trna38-AlaGGC Sc: 75.26  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGACTTAGCTTAGCTGGTAGAGCGTCTGATTTGCATTCAGAAG...........GtCAGGAGTTCGACTCTCCTAGTCTCCA... chr.trna25-AlaTGC Sc: 78.02  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCAGTAGCTCAGT.GGAtA.GAGTGCCTGGCTACGAACCAGGTG...........GtCAGAGGTTCAAATCCTCTCTGGTGCG... chr.trna17-ArgACG Sc: 76.45  



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCGATAGCTCAATCGGAtA.GAGTACCTGGCTTCGAACCAGGTG...........GtTAGAGGTTCGAGCCCTCTTCGGTGCG... chr.trna33-ArgTCG Sc: 75.50  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCCTCGTAGCTCAGTAGGAtA.GAGCGGTTGCCTCCTAAGCAGCAG...........GcCATGCGTTCGAATCGCATCGAGGACG... chr.trna30-ArgCCT Sc: 61.41  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCGATAGCTCAGT.GGAtA.GAGCATTCGCCTTCTAAGCGAATG...........GtCGCAGGTTCGAATCCTGCTCGGTCCG... chr.trna1-ArgTCT Sc: 85.99  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
TCCGGAGTAGCTCAGCGGTA.GAGCAGTGGACTGTTAATCCATTG...........GtCGTTGGTTCGAACCCATCCTCCGGAG... chr.trna10-AsnGTT Sc: 75.21  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTAGTTCAATTGGTtAGAGCACCGCCCTGTCAAGGCGGAA...........GtTGCGGGTTCAAGCCCCGTCTCTCGCG... chr.trna28-AspGTC Sc: 76.40  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
GGTGGCATAGCCAAGCGGTA.AGGCCGAGGCCTGCAAAGCCTCT...........AtCCCCGGTTCGATTCCGGG.TGCCACCT... chr.trna13-CysGCA Sc: 66.18  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTGTAGCCAAGCGGTA.AGGCAGCGGTTTTTGGTACCGTGC...........AtCGGAGGTTCGAATCCTTTCACCCCAA... chr.trna18-GlnTTG Sc: 65.58  



Glu tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCCATCGTCTAGCCtGGCccAGGACATCGGATTTTCATTCCGGTA...........ACAGGGGTTCGAATCCCCTTGGGGTCA... chr.trna36-GluTTC Sc: 50.11  



Gly tRNAs



>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGTGGTA.GAGCGCCACGTTGCCAACGTGAAG...........GtCGTGAGTTCAAGCCTCATCACCCGCT... chr.trna15-GlyGCC Sc: 75.06  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAATGGTA.GAGCTGTAGCCTTCCAAGCTACCG...........G.TGTCAGTTCGATTCTGATCGGGCGCT... chr.trna35-GlyTCC Sc: 69.63  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGAACGTAGCTCAGTTGGTtAGAGCGTCGGATTGTGGTTCCGAAG...........GtCGCGGGTTCAAGCCCCGTCGTTCGCC... chr.trna14-HisGTG Sc: 80.09  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGTTATAGCTCAGTTGGTtAGAGCGCGACACTGATAATGTCGAG...........GtCCCAAGTTCAAGTCTTGGTAACCGCA... chr.trna26-IleGAT Sc: 83.91  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<..<<<<<<<....
GCGGAAGTGGCGGAATTGGTaT.ACGCGCTATCTTGAGGTGGTAGTGGAGC...........TTTCCtTAGGGGTTCGAGTCCCCT..CTTTCGCA... chr.trna5-LeuGAG Sc: 51.25  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<..<<<<<<<....
GCAGCTATGGCGGAACCGGTaG.ACGCGCTAGATTCAGGTTCTAGTGAGC..TTAG.......GCTCaTGGAAGTTCAAGTCTTCT..TAGCTGCA... chr.trna34-LeuCAG Sc: 57.86  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>.........<<<.....>>>>>.......<<<<<..<<<<<<<....
GCCCAGGTGGTGAAATTGGTaG.ACACGCTGGATTTAGGATCCAGTGCTTCG.........CGGCA..TGTAGGTTCAAGTCCTAT..CCTGGGCA... chr.trna20-LeuTAG Sc: 62.58  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<..<<<<<<<....
GCCGGCGTGGCGGAAT.GGTaG.ACGCGGTAGACTCAAAATCTACT.CTTA.GCAA......TAAGG.TGTTGGTTCGAGTCCAAT..CGCCGGCA... chr.trna32-LeuCAA Sc: 64.83  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<..<<<<<<<....
GCTCAGATGGTGGAAT.GGTaG.ACACTAGGGACTTAAAATCCCTT.GGGC.GCAA......GCCCG.TGCAAGTTCGAGTCTTGT..TCTGAGCA... chr.trna3-LeuTAA Sc: 61.02  



Lys tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTTTAGCTCAGCGGTtA.GAGCACCTCACTTTTAATGAGGGG...........GtCGAAGGTTCAAATCCTTCAAGGCCCA... chr.trna37-LysTTT Sc: 90.95  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCAGTAGCTCAGC.GGTtA.GAGCCACGGACTCATAACCCGTTG...........GtCACAGGTTCGAATCCTGTCTGCCCCA... chr.trna11-MetCAT Sc: 83.78  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGTATAGCTCAGATGGTtA.GAGCAGCAGAATCATAATCTGCGA...........GtCGTTGGTTCAAGTCCGACTACCGCTA... chr.trna24-MetCAT Sc: 73.33  
.>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGATAGAGTAGT.GGTcA.TCTCGTTGGGCTCATAACCCAAAG...........GtCGGAGGTTCGAATCCTTCTCCCGCTA... chr.trna23-MetCAT Sc: 71.20  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTGGATAGCTCAGTTGGTAGAGCAGAGGATTGAAGATCCTTGT...........GtCGTCGGTTCGACCCCGGCTCCGGCCA... chr.trna6-PheGAA Sc: 74.36  



Pro tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CTGGGTGTAGCGCAGCCtGGT.AGCGCACTTGCATGGGGTGCAAGGG...........GgCGGAGGTTCAAATCCTCTCACCCAGA... chr.trna16-ProGGG Sc: 67.73  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTATAGCGCAGCCtGGTtAGCGCGGTTGCTTTGGGAGCAATAG...........GtCGGGGGTTCGAATCCCTCTACTCCGA... chr.trna29-ProTGG Sc: 78.14  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGTCCGAGTGGCttA.AGGAGCACGCTTGGAAAGCGTGT.GTGCGT.TAAC.GCGTAC.CGAGGGTTCGAATCCCTC..TCTCTCCGTCA chr.trna7-SerGGA Sc: 63.10  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAAGAGTGGCAGAGTGGTcgA.ATGCATCTGATTCGAAATCAGAA.GTTCTC.TTAC.AGGAAC.CGGGGGTTCGAATCCCTT..CTCTTCCG... chr.trna31-SerCGA Sc: 61.89  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAAGAATGGCAGAGCGGTttA.ATGCACCTGTCTTGAAAACAGGAGACCT...GAAA...GGGTCCGGGGGTTCGAATCCCTC..TTCTTCCG... chr.trna19-SerTGA Sc: 70.17  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAAAGATGACTGAGTGGTcgA.AAGTACGTCCCTGCTAAGGACGC.GTACCCCTAAA.GGGTAC.CGAGGGTTCGAATCCCTC..TCTTTCCG... chr.trna4-SerGCT Sc: 56.02  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCAGATAGCTCAGT.GGTA.GAGCACTTGCATGGTAAGCAAGCG...........GtCGTAGGTTCAATTCCTATTCTGGGCA... chr.trna21-ThrGGT Sc: 82.61  

>>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTAAATAGCTCAGTTGGTA.GAGCAACGCATTCGTAACGCGTAG...........GtCGTCGGTTCGATCCCGGCTTTGGGCA... chr.trna2-ThrCGT Sc: 76.52  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGAGTAGCTCAATTGGCA.GAGCATTCGATTTGTAATCGAACG...........GtTGAGGGTTCAAGTCCTTTCTCCAGCA... chr.trna8-ThrTGT Sc: 81.03  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGTGTAGCTTAGCTGGTAGAGCAGTGGCCTCCAAAGCCGCCG...........GtCAGGGGTTCGACTCCCTTCGCACCCG... chr.trna22-TrpCCA Sc: 73.32  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGGGGTGTCGCATAGCGGTcaA.TTGCATCGGACTGTAAATCCGACTCCTTAC....GGATaCGTTGGTTCAAATCCAGC.CACCCCCA... chr.trna9-TyrGTA Sc: 56.66  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTATTAGCTCAGTTGGTtA.GAGCGTCACGTTGACATCGTGAAG...........GtCAGCTGTTCAAGTCAGCTATATCCCA... chr.trna12-ValGAC Sc: 72.25  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGATGCGTAGCTCAGC.GGTtA.GAGCACCTGTCTTACACACAGGGG...........GtCATAGGTTCAAATCCTGTCGTGTCCA... chr.trna27-ValTAC Sc: 78.56

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.