tRNAscan-SE Analysis of the Chlamydophila abortus S26 3 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	31825	31897	Arg	TCT	0	0	84.86	62.43	22.43	Both
chr	2	52289	52361	Thr	CGT	0	0	76.52	61.10	15.42	Both
chr	3	122658	122740	Leu	TAA	0	0	59.80	21.60	38.20	Both
chr	4	130402	130489	Ser	GCT	0	0	56.02	19.48	36.54	Both
chr	5	160175	160256	Leu	GAG	0	0	51.78	24.83	26.95	Both
chr	6	210853	210925	Phe	GAA	0	0	74.36	57.39	16.97	Both
chr	7	215320	215409	Ser	GGA	0	0	73.25	39.41	33.84	Both
chr	8	586877	586949	Thr	TGT	0	0	81.03	60.62	20.41	Both
chr	9	586956	587038	Tyr	GTA	0	0	54.27	29.27	25.00	Both
chr	10	708361	708432	Asn	GTT	0	0	75.21	54.68	20.53	Both
chr	11	780865	780937	Met	CAT	0	0	83.78	69.22	14.56	Both
chr	12	855534	855607	Val	GAC	0	0	72.25	40.23	32.02	Both
chr	13	966338	966408	Cys	GCA	0	0	66.18	34.50	31.68	Both
chr	14	997618	997691	His	GTG	0	0	80.09	58.86	21.23	Both
chr	15	1035730	1035801	Gly	GCC	0	0	75.06	55.31	19.75	Both
chr	16	1142290	1142217	Pro	GGG	0	0	67.73	42.31	25.42	Both
chr	17	1109292	1109220	Arg	ACG	0	0	76.99	55.84	21.15	Both
chr	18	916895	916824	Gln	TTG	0	0	65.58	41.99	23.59	Both
chr	19	850945	850861	Ser	TGA	0	0	70.17	33.75	36.42	Both
chr	20	816806	816725	Leu	TAG	0	0	62.58	34.84	27.74	Both
chr	21	778770	778699	Thr	GGT	0	0	82.61	60.61	22.00	Both
chr	22	777416	777344	Trp	CCA	0	0	73.70	62.24	11.46	Both
chr	23	663685	663613	Met	CAT	0	0	71.20	43.91	27.29	Both
chr	24	663592	663519	Met	CAT	0	0	73.33	54.67	18.66	Both
chr	25	642907	642835	Ala	TGC	0	0	78.02	57.19	20.83	Both
chr	26	642829	642756	Ile	GAT	0	0	83.91	51.91	32.00	Both
chr	27	584178	584106	Val	TAC	0	0	78.56	64.68	13.88	Both
chr	28	584102	584029	Asp	GTC	0	0	76.40	64.20	12.20	Both
chr	29	475720	475646	Pro	TGG	0	0	78.14	54.16	23.98	Both
chr	30	421631	421558	Arg	CCT	0	0	66.00	36.03	29.97	Both
chr	31	345898	345809	Ser	CGA	0	0	64.10	32.63	31.47	Both
chr	32	169078	168996	Leu	CAA	0	0	64.83	31.91	32.92	Both
chr	33	163044	162971	Arg	TCG	0	0	75.48	53.74	21.74	Both
chr	34	98612	98529	Leu	CAG	0	0	57.86	22.62	35.24	Both
chr	35	57867	57797	Gly	TCC	0	0	69.63	43.72	25.91	Both
chr	36	54634	54560	Glu	TTC	0	0	48.65	29.79	18.86	Both
chr	37	54533	54461	Lys	TTT	0	0	90.95	69.98	20.97	Both
chr	38	5378	5306	Ala	GGC	0	0	76.04	51.83	24.21	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.