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tRNAscan-SE Analysis of Canis familiaris (dog) (May 2005)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1 52 8697679 8697750 View Ala TGC tttcagacct tgacttttcc 0 0 73.08 47.67 25.41 Both chr1 178 17172977 17173049 View Lys CTT ctaaagggac cagagcttac 0 0 53.97 42.42 11.55 Both chr1 540 38361428 38361500 View Lys CTT gtaaaagagt tggagcctgt 0 0 54.55 40.42 14.13 Both chr1 547 38708864 38708945 View Leu TAA gttcgcctgt gatgtttggt 0 0 81.58 50.37 31.21 Both chr1 603 42291102 42291174 View Gln CTG ttttcagagt tggagattat 0 0 41.90 36.25 5.65 Both chr1 797 54356485 54356555 View Gln TTG aaatacaggt tatagctcac 0 0 38.25 33.16 5.09 Both chr1 903 61537491 61537582 View Lys CTT tttttggggt ctgtgcttag 61537528 61537548 33.36 26.92 6.44 Both chr1 942 64017180 64017252 View Lys CTT gagcaggggc tagagattac 0 0 48.08 36.08 12.00 Both chr1 979 66752636 66752708 View Lys CTT atgagagggt cagagatgac 0 0 55.30 41.73 13.57 Both chr1 1069 73522747 73522828 View His GTG cttctgggca ccctgcatgg 0 0 22.83 16.25 6.58 Both chr1 1158 78754845 78754917 View Arg CCT gtttaggagc tgaagattgc 0 0 50.58 42.01 8.57 Both chr1 1199 81834101 81834172 View Ala AGC acctctagct ttttctgagc 0 0 55.80 37.75 18.05 Both chr1 1971 111719109 111719188 View Gln TTG attctaggat ccctgcatgg 0 0 39.40 32.74 6.66 Both chr1 1992 112104737 112104809 View Lys CTT ctgtgggatc tggagataac 0 0 33.43 21.71 11.72 Both chr1 2024 112810603 112810675 View Lys CTT atatgggggc tggagcctac 0 0 57.06 45.68 11.38 Eufind chr1 2036 112975306 112975391 View SeC(e) TCA agcgagcctt gacacaacaa 0 0 75.99 0.00 0.00 Eufind chr1 2156 116720789 116720881 View Ile TAT tgcggccgga tctctttttc 116720827 116720845 67.11 38.92 28.19 Both chr1 2163 117003006 117003078 View Lys CTT cccaggggcc tggagcctcc 0 0 37.91 29.00 8.91 Both chr1 2452 121873217 121873144 View Thr AGT ccgtgcgggc caaccgagcg 0 0 84.06 64.45 19.61 Both chr1 2480 120960465 120960393 View Lys CTT agggggggac tagagatgat 0 0 53.30 38.29 15.01 Both chr1 2622 117166414 117166342 View Lys CTT agctcggagc tagagatcac 0 0 54.34 47.21 7.13 Both chr1 2626 117039139 117039058 View Lys CTT gcagtggggc tgggccctac 0 0 36.64 29.39 7.25 Both chr1 2875 110442590 110442518 View Lys CTT ttcttgcgac tagatactac 0 0 40.58 25.74 14.84 Both chr1 2891 109980712 109980640 View Lys CTT aatcatggac gcagggagca 0 0 38.15 22.59 15.56 Both chr1 3012 106368133 106368061 View Lys CTT aaaatgggat tagagattac 0 0 53.78 40.98 12.80 Both chr1 3327 92722946 92722874 View Sup CTA gctctagggc tacaacctgt 0 0 56.40 33.00 23.40 Both chr1 3487 85405692 85405620 View Lys CTT ttttgaggac tagagattac 0 0 46.52 36.29 10.23 Both chr1 3557 82110654 82110582 View Lys CTT actgtatggt cagacattac 0 0 43.65 31.38 12.27 Both chr1 3788 67711687 67711616 View Glu CTC gtactcaagt acacgtcttt 0 0 76.61 53.94 22.67 Both chr1 4169 42345916 42345846 View Arg TCG gaggggtggg tagagattag 0 0 28.62 18.59 10.03 Both chr1 4287 34370093 34370020 View Lys CTT aagccaaggc atagagatta 0 0 30.50 21.70 8.80 Both chr1 4454 21526343 21526271 View Lys TTT tcagaggggt agagatcaca 0 0 34.83 29.57 5.26 Both   chr2 144 12909902 12909976 View Gln TTG ctcgggcgat ccctgtgagg 0 0 35.97 29.55 6.42 Both chr2 175 13796992 13797065 View Asn GTT cggcaccgga acgcccgctt 0 0 82.24 58.97 23.27 Both chr2 273 20203789 20203861 View Lys CTT aaatagaggt tagagattac 0 0 60.87 46.72 14.15 Both chr2 310 22543864 22543936 View Lys CTT ttctaggggc tagagattac 0 0 47.43 34.42 13.01 Both chr2 445 29860086 29860158 View Glu CTC gttttggggt tagagactat 0 0 37.97 29.07 8.90 Both chr2 477 31638118 31638201 View Gln TTG tccttggggt ttctgctcag 0 0 40.70 24.49 16.21 Both chr2 528 36143880 36143961 View Ser AGA aaccacacct gtgtgttttt 0 0 61.31 34.31 27.00 Both chr2 554 37525768 37525838 View Gln TTG aaataggaat tagacatcac 0 0 29.49 24.23 5.26 Both chr2 887 54057697 54057769 View Lys CTT gtgttggggt tagagattat 0 0 39.89 33.64 6.25 Both chr2 1058 61965809 61965891 View Leu CAG agagcgagca agtgttcttt 0 0 77.22 46.89 30.33 Both chr2 1124 66081813 66081885 View Glu CTC accgaggggc taaagattac 0 0 32.40 26.46 5.94 Both chr2 1326 74691676 74691746 View Gln TTG aatcgggagc tagagattac 0 0 21.36 12.71 8.65 Both chr2 1530 80586649 80586721 View Gln CTG ttaggggggc gaggattatt 0 0 43.60 34.17 9.43 Both chr2 1804 85225810 85225727 View Arg TCG tttgaggggc tcctgctcag 0 0 38.78 33.05 5.73 Both chr2 1933 80724617 80724545 View Lys CTT agtgaagggc cagaaattcc 0 0 35.25 20.93 14.32 Both chr2 2120 75187986 75187914 View Lys CTT catatggggt gagaaactac 0 0 38.73 31.12 7.61 Both chr2 2203 72815457 72815382 View Lys CTT ctacagcagt taaagattac 0 0 30.57 20.87 9.70 Both chr2 2250 71059227 71059155 View Lys CTT attatggggt gagagattat 0 0 38.27 32.52 5.75 Both chr2 2366 63971882 63971812 View Lys TTT aagagaggtt tggagcttac 0 0 31.26 16.01 15.25 Both chr2 2404 61966264 61966182 View Leu CAG ctcccgggaa actcctctct 0 0 75.90 46.89 29.01 Both chr2 2514 57492467 57492384 View Gln TTG acagtttagg ccctgctcag 0 0 35.65 27.95 7.70 Both chr2 2515 57478539 57478467 View Lys CTT acccaggggc tagagattac 0 0 53.62 41.62 12.00 Both chr2 2654 51548716 51548644 View Glu CTC gatcaggggt tagagattag 0 0 29.50 21.98 7.52 Both chr2 2706 48166963 48166891 View Lys CTT catctgggct tagagattgc 0 0 39.23 32.43 6.80 Both chr2 2730 46065514 46065442 View Lys CTT ttgttggggc tagagattac 0 0 45.79 31.76 14.03 Both chr2 2751 45294996 45294906 View Lys CTT tcttggaagg ctgccctcag 45294959 45294942 38.29 33.02 5.27 Both chr2 2944 37258430 37258343 View Glu CTC tacttggggc ccacgctcag 37258393 37258379 38.33 25.30 13.03 Both chr2 3091 27068870 27068798 View Lys CTT gaattggggt tagagcttac 0 0 60.96 49.34 11.62 Both chr2 3110 26536288 26536218 View Arg TCG gcggatgggc taaagattac 0 0 37.37 31.86 5.51 Both   chr3 337 26779017 26779089 View Lys CTT tcctaggggc tagaaattgc 0 0 45.38 34.06 11.32 Both chr3 571 37423800 37423871 View Glu TTC ttctgtcgcc tgctggagtt 0 0 74.37 53.30 21.07 Both chr3 802 54896789 54896861 View Lys TTT gtactggggc cagagatgac 0 0 42.00 33.07 8.93 Both chr3 814 55235798 55235870 View Arg TCG ggcgtcgggc caagggagtc 0 0 76.93 58.34 18.59 Both chr3 815 55247479 55247551 View Lys TTT ttcttggggc tagagatcac 0 0 43.70 30.54 13.16 Both chr3 852 56483749 56483821 View Lys CTT ggtggggggc tagtgattac 0 0 41.19 32.97 8.22 Both chr3 875 57137172 57137244 View Lys CTT tattgggagt tggaacctac 0 0 44.60 33.59 11.01 Both chr3 1064 71384677 71384758 View Gln CTG cttgtgtgac ccctgtgagg 0 0 29.65 19.80 9.85 Both chr3 1253 82472667 82472739 View Lys CTT ttctggggct tagatatttc 0 0 44.00 31.75 12.25 Both chr3 1502 90188208 90188136 View Arg CCT tgagaggggc tagagattgc 0 0 44.21 29.66 14.55 Both chr3 1981 61018159 61018087 View Lys CTT gcctccgccc gttgccgttt 0 0 80.72 58.28 22.44 Both chr3 2197 50200791 50200719 View Lys CTT aaagaggggt tagagattat 0 0 39.99 29.37 10.62 Both chr3 2625 24159313 24159241 View Lys CTT tagggaggac tagagtttac 0 0 45.04 32.38 12.66 Both chr3 2819 9925747 9925675 View Lys CTT ttataggggt tagagcttac 0 0 59.09 49.16 9.93 Both   chr4 136 11009263 11009335 View Lys CTT tttgtggggc ttgagactat 0 0 58.89 47.64 11.25 Eufind chr4 178 12958545 12958617 View Arg CCT gtccctaggt tagagagtta 0 0 40.87 35.16 5.71 Both chr4 324 22277928 22278009 View Ser TGA cgcctccgtg gaagcgggtg 0 0 90.86 62.33 28.53 Both chr4 885 54150736 54150808 View Lys CTT ttacagatgt tagagatcgc 0 0 37.42 27.17 10.25 Both chr4 998 62722308 62722379 View Lys CTT aggaaggagc tagagattat 0 0 23.26 17.34 5.92 Both chr4 1415 89551615 89551698 View Arg TCG cacaggggac cccctgaggg 0 0 49.67 42.10 7.57 Both chr4 1671 75042625 75042554 View Leu TAA ggtaggggat tagagattac 0 0 32.88 20.44 12.44 Both chr4 1828 65012583 65012511 View Gly CCC aacttctggc cagagattac 0 0 48.09 34.10 13.99 Both chr4 2213 38814078 38814006 View Lys CTT tgagcagggc tagagattac 0 0 49.88 36.13 13.75 Both chr4 2404 27698983 27698911 View Lys CTT ttcttggggg gggggattac 0 0 43.35 29.70 13.65 Both chr4 2512 23917640 23917568 View Lys CTT atggaggggc tagagatgac 0 0 49.48 40.44 9.04 Both chr4 2542 23115708 23115636 View Lys CTT ttcttggggt tggagattgc 0 0 32.04 20.24 11.80 Both chr4 2561 22792277 22792205 View Lys CTT cttcaggggt tagagattac 0 0 51.70 39.32 12.38 Both chr4 2585 21951351 21951279 View Arg TCT ctttgtctga tttgcccttt 0 0 70.94 52.68 18.26 Both chr4 2658 16232216 16232144 View Lys CTT ttcttgagac tggagattac 0 0 51.22 39.54 11.68 Both chr4 2734 11503012 11502939 View Lys CTT aatttggggg tagagattac 0 0 43.26 26.47 16.79 Both chr4 2783 8609525 8609453 View Arg CCT taccaggggc tagaaattac 0 0 39.78 25.23 14.55 Both   chr5 48 7567988 7568060 View Lys CTT ttttcggggc tagaggttac 0 0 57.08 37.92 19.16 Eufind chr5 65 7864381 7864453 View Lys CTT ctggaggggt tggagcctac 0 0 38.21 29.00 9.21 Both chr5 84 8890328 8890400 View Lys CTT acgcaggcac gagagtctac 0 0 56.25 47.34 8.91 Eufind chr5 187 14112471 14112554 View Arg TCG tagtaggggc ccctgctcag 0 0 26.60 19.16 7.44 Both chr5 247 16380052 16380124 View Lys TTT ggccggggtg taatttagtt 0 0 31.66 22.33 9.33 Both chr5 286 17651570 17651641 View Lys CTT aaactggggc tggagattac 0 0 27.24 16.86 10.38 Both chr5 325 19302569 19302641 View Lys CTT cgggaggggc tggagcctgc 0 0 45.86 28.73 17.13 Both chr5 402 25302194 25302263 View Glu TTC acctacgggt tcaaggttac 0 0 41.84 29.99 11.85 Both chr5 414 25745652 25745724 View Lys CTT aaaatgagcc tggagcctac 0 0 41.01 29.93 11.08 Both chr5 432 26765656 26765728 View Lys CTT ttcctgaggt tagagattac 0 0 40.59 32.50 8.09 Both chr5 491 31143101 31143191 View Lys CTT ggcttggggt ccacactcag 31143138 31143155 43.30 37.10 6.20 Both chr5 553 34986458 34986530 View Lys CTT aaagtgggat aagagagtac 0 0 58.40 48.01 10.39 Eufind chr5 585 35936040 35936112 View Lys TTT acagacaaga tttgcttttt 0 0 83.80 62.78 21.02 Both chr5 586 35936792 35936863 View Gln CTG tcctgaagtt tgcattttag 0 0 73.65 50.36 23.29 Both chr5 587 35937918 35938004 View Arg TCT cccgccaggt attttatttc 35937955 35937968 70.50 50.05 20.45 Both chr5 588 35942872 35942942 View Gly GCC gttactactt ctgacttact 0 0 81.62 61.57 20.05 Both chr5 589 35994805 35994876 View Trp CCA ccggccggcc gctctttttc 0 0 74.00 52.21 21.79 Both chr5 590 35995287 35995368 View Ser GCT cagcccggca gcgtgcggtt 0 0 85.34 57.77 27.57 Both chr5 591 35995624 35995697 View Thr AGT cctcacggtg ccacactttg 0 0 84.06 64.45 19.61 Both chr5 592 35996032 35996105 View Ile AAT aacatcaact ggagtggttc 0 0 80.66 62.17 18.49 Both chr5 594 36022485 36022556 View Gly TCC cttgcggcgg gcactttttc 0 0 73.26 52.83 20.43 Both chr5 846 43537501 43537573 View Lys CTT attaagagga cagagattat 0 0 38.38 17.10 21.28 Both chr5 888 44602054 44602126 View Lys CTT gttttagggc tagagattac 0 0 44.52 27.42 17.10 Both chr5 1113 56936703 56936775 View Lys CTT tgaattgggc tagagatcac 0 0 46.08 35.06 11.02 Both chr5 1142 57843831 57843903 View Lys CTT agggtggtac tggagcctac 0 0 36.78 27.12 9.66 Both chr5 1148 58215620 58215701 View Trp CCA taagtgggat tcctgtgagg 0 0 39.31 32.43 6.88 Both chr5 1446 73244689 73244771 View Arg TCG gagtggggac ccctgcatgg 0 0 35.35 29.86 5.49 Both chr5 1567 79731164 79731234 View Gly GCC gagcagcaca cggctgctct 0 0 81.62 61.57 20.05 Both chr5 1568 79732423 79732493 View Gly GCC cacagctgga aacagcaaat 0 0 81.62 61.57 20.05 Both chr5 1609 81840979 81841051 View Lys CTT tgagtggggt tagagattac 0 0 40.97 30.02 10.95 Both chr5 1985 84006026 84005954 View Lys CTT taataggggt taaagattat 0 0 32.80 23.85 8.95 Both chr5 2006 83573913 83573841 View Lys CTT tttgatgggc tagagatgac 0 0 46.43 30.50 15.93 Both chr5 2095 79723423 79723353 View Gly GCC ctccagcgca gatgcgggga 0 0 81.62 61.57 20.05 Both chr5 2106 79285955 79285885 View Gly GCC tgtcggcgca gctgtgaagt 0 0 81.62 61.57 20.05 Both chr5 2130 78726270 78726180 View Lys CTT agtgaggagc ctgtgctaag 78726233 78726214 24.48 17.38 7.10 Both chr5 2131 78720109 78720037 View Met CAT ccacaggggc tagagattat 0 0 32.60 24.40 8.20 Both chr5 2186 76274503 76274431 View Met CAT ttctagggat tagagcttac 0 0 41.93 29.46 12.47 Both chr5 2462 57632135 57632063 View Lys CTT agaatagggc tagaggttac 0 0 48.53 35.93 12.60 Both chr5 2582 50503341 50503259 View Gln TTG ttccggggat cgcggcatgg 0 0 36.77 31.15 5.62 Both chr5 2672 45174205 45174135 View Ser CGA caagtggggc tggagcttac 0 0 35.22 24.73 10.49 Both chr5 2783 42342867 42342795 View Lys CTT aaaatggggc tagagtttac 0 0 26.27 21.08 5.19 Both chr5 2928 37865538 37865466 View Lys CTT cactcagggc tagagattac 0 0 44.65 29.59 15.06 Both chr5 2978 36027111 36027038 View Ile AAT ccccaccgct cgttaggatc 0 0 80.66 62.17 18.49 Both chr5 2979 36026600 36026519 View Ser AGA tcccggcggt caagcttttt 0 0 88.01 56.90 31.11 Both chr5 2980 36026267 36026194 View Thr AGT cagtatcctt ttattcaacc 0 0 84.06 64.45 19.61 Both chr5 2981 36023569 36023498 View Pro CGG ctctcacgtc catttggttt 0 0 76.52 54.46 22.06 Both chr5 2982 36023055 36022984 View Asp GTC ttcagctccc aagcggtgtg 0 0 72.92 48.38 24.54 Both chr5 2983 36021956 36021885 View Trp CCA gacgcgggag cggaaggttg 0 0 74.81 54.94 19.87 Both chr5 2986 35951197 35951124 View Thr AGT gccttccgcc ggttccgtaa 0 0 81.60 62.00 19.60 Both chr5 2987 35950680 35950599 View Ser CGA gccgcacgcg tgtgtacttt 0 0 92.09 62.91 29.18 Both chr5 2988 35937421 35937340 View Leu TAG cttccacgca agatggagtt 0 0 72.19 50.81 21.38 Both chr5 3023 34750886 34750814 View Lys CTT ttgctggagc cagagatcac 0 0 44.56 28.12 16.44 Both chr5 3235 21514517 21514445 View Lys CTT gaagaggggt tagaaattac 0 0 32.98 23.88 9.10 Both chr5 3413 12435242 12435170 View Lys CTT ggcttggggg tagaaattac 0 0 40.56 30.25 10.31 Both chr5 3416 12024376 12024304 View Lys CTT atcatgggga tagagcttac 0 0 50.92 41.58 9.34 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr6 207 10814601 10814673 View Lys TTT agctgggggc tagagaccgc 0 0 41.92 34.21 7.71 Both chr6 224 11559605 11559678 View Lys CTT ggaaagggga tagagatgat 0 0 53.85 44.48 9.37 Both chr6 253 12644517 12644589 View Lys CTT agagggaggt tagagattac 0 0 41.20 28.05 13.15 Both chr6 272 13134223 13134294 View Lys CTT atattgagtc tagaacctac 0 0 35.24 25.05 10.19 Both chr6 421 20363491 20363563 View Lys CTT ggattggagt aagagattac 0 0 31.18 25.40 5.78 Both chr6 462 21298230 21298302 View Lys CTT tgaaagtgac tagagattac 0 0 32.34 25.42 6.92 Both chr6 516 23448264 23448336 View Lys CTT tacagacggc tagagattac 0 0 56.17 37.39 18.78 Eufind chr6 599 25535813 25535885 View Lys CTT atactggggc tggagcctac 0 0 53.97 43.64 10.33 Both chr6 627 26472427 26472508 View Leu TAG cgtagcgggc cacccaggac 0 0 63.31 40.72 22.59 Both chr6 1012 41072631 41072703 View Arg CCT ccaggggcgc cggtggttct 0 0 71.31 54.11 17.20 Both chr6 1014 41087218 41087289 View Pro AGG ccccgagggc tagctttttc 0 0 75.92 53.85 22.07 Both chr6 1015 41090260 41090332 View Lys CTT ggctgcatct tcttttaaac 0 0 65.44 49.09 16.35 Both chr6 1016 41094436 41094508 View Lys CTT ccacccgccg tggcttttgt 0 0 81.85 59.19 22.66 Both chr6 1052 42972683 42972753 View Gly CCC attgctaaca tcagttttct 0 0 76.98 51.05 25.93 Both chr6 1153 49224094 49224176 View Gln TTG aggtagggat ccctgcatgg 0 0 25.94 20.02 5.92 Both chr6 1213 52800099 52800171 View Lys CTT ggattgggat tagaacttac 0 0 53.93 43.13 10.80 Both chr6 1342 59789828 59789910 View Gln TTG tttcaggggc ccccatgggg 0 0 30.34 21.40 8.94 Both chr6 1375 61053251 61053323 View Lys CTT gggggcaact taaaccttac 0 0 54.42 43.36 11.06 Both chr6 1562 72818982 72819054 View Lys CTT gagctggggc tagagattgc 0 0 35.58 29.94 5.64 Both chr6 1950 61874682 61874610 View Gln CTG atagaggggc tagagaatac 0 0 37.45 29.75 7.70 Both chr6 2026 58329861 58329777 View Arg TCT tccaacaggt cagtttttcc 58329824 58329813 71.18 52.88 18.30 Both chr6 2037 57961534 57961443 View Lys CTT aagaaggggt ccctgctcag 57961497 57961478 31.02 24.22 6.80 Both chr6 2051 57447721 57447649 View Lys CTT attcagggga tagagaggac 0 0 44.28 32.64 11.64 Both chr6 2091 53488884 53488812 View Ala TGC gctcatctta caaaattgcc 0 0 63.53 43.89 19.64 Both chr6 2237 45966769 45966697 View Lys CTT cttcggggac cgagattatt 0 0 27.12 19.34 7.78 Both chr6 2321 41105841 41105769 View Arg CCG tcagtgctgg ctgcagtggt 0 0 69.88 52.79 17.09 Both chr6 2322 41104350 41104278 View Arg CCT tcccctgccg cagagggtta 0 0 71.53 57.48 14.05 Both chr6 2323 41093561 41093490 View Pro TGG gcgccggggc acttttttgg 0 0 76.15 54.09 22.06 Both chr6 2324 41086997 41086925 View Lys CTT tctcgtcttc tgtggttttg 0 0 79.24 57.94 21.30 Both chr6 2325 41081960 41081888 View Lys CTT gggctggtgt tgaagctttt 0 0 83.44 59.46 23.98 Both chr6 2326 41078503 41078432 View Pro CGG tcgcgtgcca gcggtgtgcg 0 0 76.52 54.46 22.06 Both chr6 2327 41071757 41071685 View Lys CTT ctcccctagc aggctgatat 0 0 77.69 56.35 21.34 Both chr6 2328 41069211 41069140 View Pro TGG gaggcgtggc tccctatctt 0 0 76.15 54.09 22.06 Both chr6 2329 41067757 41067686 View Pro AGG tgtccagcag tcctttttgt 0 0 75.92 53.85 22.07 Both chr6 2330 41063045 41062973 View Lys CTT gcccaagggc gcttattttc 0 0 80.47 57.81 22.66 Both chr6 2331 41062478 41062407 View Pro AGG ctagccctgt tccttttgta 0 0 75.92 53.85 22.07 Both chr6 2332 41059958 41059886 View Arg CCT cttggcagct ataggaagga 0 0 73.88 56.31 17.57 Both chr6 2360 40146237 40146165 View Lys CTT agggtaggga tagagcttac 0 0 43.14 34.55 8.59 Both chr6 2518 34060652 34060570 View Cys GCA aaggtgggat ccctgcaggg 0 0 35.11 26.31 8.80 Both chr6 2546 31925210 31925139 View Thr CGT ttccaacgca ggcgtcggtc 0 0 80.42 57.57 22.85 Both chr6 2550 31791001 31790929 View Lys CTT catatggggt tggagattac 0 0 53.93 36.98 16.95 Both chr6 2642 28406416 28406345 View Ala AGC gtcaccaggt ttctgttgtg 0 0 81.40 56.28 25.12 Both chr6 2682 26387213 26387132 View Leu AAG tcggcagcac ggacgctttt 0 0 69.84 50.16 19.68 Both chr6 2686 26330932 26330860 View Glu CTC tttaaggggt cagagcctac 0 0 65.26 50.68 14.58 Both chr6 2687 26310055 26309983 View Lys CTT aaaaagaggt tggagcctac 0 0 47.44 32.15 15.29 Both chr6 2741 25133540 25133468 View Lys CTT atataggggt tgagattact 0 0 34.04 22.34 11.70 Both chr6 3019 13120497 13120426 View Trp CCA cagcgtgcag cggctgtggc 0 0 75.74 53.95 21.79 Both chr6 3024 13067063 13066991 View Lys CTT aatcaggggc taaagattac 0 0 33.48 18.19 15.29 Both chr6 3138 9011291 9011219 View Lys CTT atttgggggc cagagataaa 0 0 48.62 33.77 14.85 Both   chr7 136 10315699 10315771 View Lys CTT gtttagaggc tagaaattac 0 0 49.09 32.65 16.44 Both chr7 257 17141989 17142061 View Lys CTT ttttttgggc tagagattac 0 0 37.69 31.75 5.94 Both chr7 477 27306819 27306891 View Lys TTT ttcctggggt tagagatgac 0 0 37.71 23.54 14.17 Both chr7 566 31646476 31646548 View Lys CTT cttctggggt tagagattac 0 0 32.46 24.82 7.64 Both chr7 611 33714283 33714354 View Pro AGG gagtcacgcc tctttttttc 0 0 75.92 53.85 22.07 Both chr7 699 39246749 39246821 View Lys CTT atcctggagt tggagcctaa 0 0 57.77 48.26 9.51 Both chr7 791 43134881 43134953 View Lys CTT catttggggc tagaaatgat 0 0 42.20 34.47 7.73 Both chr7 809 44394287 44394359 View Lys CTT taccaaaggt tagacttacc 0 0 44.22 32.42 11.80 Both chr7 894 47393065 47393137 View Lys CTT ggagaggggc tagagttcag 0 0 42.24 28.45 13.79 Both chr7 961 54918619 54918691 View Lys CTT tccatgggtc cagagattag 0 0 32.83 25.25 7.58 Both chr7 1050 61235269 61235341 View Lys TTT gtggtgggat tatagattac 0 0 49.78 34.35 15.43 Both chr7 1109 65379311 65379383 View Lys CTT atttaggggc tagaaattac 0 0 33.62 27.86 5.76 Both chr7 1346 78430303 78430375 View Lys CTT ttgtcagggt tggagcctat 0 0 57.64 45.71 11.93 Both chr7 1470 82532387 82532315 View Gly CCC ttcctggggt tagagattac 0 0 44.39 28.91 15.48 Both chr7 1682 70074617 70074545 View Lys CTT attagggggc taaagattac 0 0 38.20 27.05 11.15 Both chr7 1701 69427504 69427432 View Glu TTC tgagagcggt tggagcctac 0 0 35.29 28.63 6.66 Both chr7 1791 64506524 64506434 View Lys CTT aatttggggt ctagttcagt 64506487 64506480 30.50 24.51 5.99 Both chr7 1871 60156593 60156521 View Lys CTT gaataggggt tagaacttat 0 0 55.22 47.38 7.84 Eufind chr7 1954 54390571 54390488 View Gln TTG gtttagggga ccctgctcag 0 0 33.41 28.19 5.22 Both chr7 2023 48165233 48165161 View Lys CTT ctctgggggt tggagcctac 0 0 55.01 46.40 8.61 Eufind chr7 2046 46561570 46561500 View Ser TGA aagaggaggg tagagattac 0 0 26.66 13.23 13.43 Both chr7 2050 46380069 46379998 View Met CAT caacgccagt taaggtatta 0 0 68.98 40.96 28.02 Both chr7 2339 33715064 33714993 View Pro CGG tgccgagagt aggcttttct 0 0 76.52 54.46 22.06 Both chr7 2457 26439333 26439261 View Lys CTT gtggggagac tggagtctac 0 0 39.73 29.72 10.01 Both   chr8 41 6260906 6260978 View Arg ACG aattgtctcc agtgagaccg 0 0 72.37 52.49 19.88 Both chr8 61 6988118 6988198 View Sup TTA ctaatgagat ccctgcatgg 0 0 40.86 32.61 8.25 Both chr8 222 17093209 17093299 View Lys CTT gttctagggc tagagattac 17093246 17093252 34.81 29.61 5.20 Both chr8 244 18183922 18184002 View Lys CTT gaggaggagc tataacttag 18183959 18183966 35.61 25.61 10.00 Both chr8 393 29758643 29758714 View Lys CTT aacttggggc tagagattac 0 0 39.02 28.69 10.33 Both chr8 818 50077409 50077481 View Lys CTT ggcggggggc tagagattag 0 0 44.71 28.30 16.41 Both chr8 894 52128919 52128991 View Lys CTT aaacttaggc tggagattac 0 0 45.16 24.57 20.59 Both chr8 1149 67548491 67548563 View Lys CTT agtgtgaggt cagagattac 0 0 48.19 39.74 8.45 Both chr8 1268 73323412 73323485 View Ile AAT gccaccgggt cgggagcagc 0 0 80.66 62.17 18.49 Both chr8 1279 73691543 73691615 View Lys CTT aatctggggc tagagattac 0 0 56.67 44.58 12.09 Eufind chr8 1382 74211768 74211695 View Lys CTT atctaagggt tagagattac 0 0 31.84 25.55 6.29 Both chr8 1400 73597585 73597513 View Arg CCT cctctggggt cagagcctac 0 0 44.56 37.00 7.56 Both chr8 1780 52234112 52234040 View Glu CTC tttgtcaggt tggagcctat 0 0 39.53 31.58 7.95 Both chr8 2028 41477893 41477821 View Lys CTT tttgtagggt tagagattac 0 0 53.21 42.59 10.62 Both chr8 2046 41091914 41091842 View Lys CTT gggcgggggt tggagcttac 0 0 38.13 32.47 5.66 Both chr8 2127 36643324 36643252 View Lys CTT cctcccaggc attggctctt 0 0 80.72 58.28 22.44 Both chr8 2384 19410189 19410116 View Asn GTT tctttagccg gggcgttctc 0 0 60.73 42.98 17.75 Both chr8 2461 16433557 16433468 View Tyr GTA gagcgcgcac ggtgcctgac 16433520 16433504 65.40 42.70 22.70 Both chr8 2511 13527232 13527160 View Lys CTT taactgaaac tagagtttac 0 0 43.77 36.59 7.18 Both   chr9 92 7204624 7204696 View Asn ATT cttctggggt tagagattac 0 0 37.99 27.26 10.73 Both chr9 152 8443215 8443287 View Arg CCT cgccccgcag gcgcgggcgg 0 0 73.41 55.84 17.57 Both chr9 270 14136427 14136500 View Lys CTT gggggtggat tagagaggac 0 0 42.20 32.98 9.22 Both chr9 319 15687709 15687781 View Arg CCG atcctgtggt cacggagatt 0 0 65.49 49.24 16.25 Both chr9 412 18573051 18573123 View Met CAT ctctgggggg tagatattac 0 0 36.05 26.64 9.41 Both chr9 513 22700725 22700797 View Lys CTT gtcagggagc aggaaattac 0 0 41.88 31.52 10.36 Both chr9 521 23027232 23027304 View Lys CTT tgttagaggc tagagcttac 0 0 44.08 28.73 15.35 Both chr9 557 23846348 23846420 View Lys CTT aaccaggggc gagaggttac 0 0 45.40 31.82 13.58 Both chr9 580 24414936 24415008 View Lys CTT gccatgggat tagagattac 0 0 42.57 35.48 7.09 Both chr9 626 26535896 26535967 View Cys GCA ctggcgtgct ctcgtcgtca 0 0 77.71 58.47 19.24 Both chr9 627 26536582 26536653 View Cys GCA cgtcagcgga tggcaagaat 0 0 77.71 58.47 19.24 Both chr9 631 26712181 26712252 View Cys GCA gcagcggcgt tcgtggtttt 0 0 77.18 59.26 17.92 Both chr9 632 26717750 26717821 View Cys GCA agccagcaga gctgtattca 0 0 74.26 55.02 19.24 Both chr9 633 26736748 26736819 View Cys GCA actaggtcat tcctcttccc 0 0 74.26 55.02 19.24 Both chr9 637 26811935 26812008 View Asn GTT agttgtcgca cagctgtttt 0 0 82.24 58.97 23.27 Both chr9 642 27018319 27018391 View Lys CTT gatttggggt gagagattac 0 0 55.88 45.94 9.94 Both chr9 706 28683939 28684010 View Gln TTG gcagccagca cttcaaatct 0 0 73.77 50.83 22.94 Both chr9 956 39412821 39412893 View Lys CTT atttgatggt tagattactt 0 0 48.50 31.81 16.69 Both chr9 963 39652715 39652787 View Lys CTT aatgtggggt ggaagcctac 0 0 57.46 41.56 15.90 Both chr9 1066 44029779 44029864 View Gln TTG gagatggggt gggagcctgc 0 0 26.00 16.57 9.43 Both chr9 1113 45240977 45241049 View Glu TTC gcagaggggt tagagcctga 0 0 61.38 45.81 15.57 Both chr9 1125 45588864 45588936 View Lys CTT tctttgggga taaagtttac 0 0 64.00 44.03 19.97 Both chr9 1153 46333376 46333449 View Undet ??? tcactgggga ggtgtagaaa 0 0 29.68 16.47 13.21 Both chr9 1172 46814961 46815033 View Lys CTT gatttggggt tggggcctat 0 0 46.47 38.63 7.84 Both chr9 1201 47691133 47691205 View Lys CTT acccaggatc tagagattac 0 0 40.10 28.43 11.67 Both chr9 1251 48953506 48953587 View Gln CTG gaactgggac ccttgcaggg 0 0 33.58 25.90 7.68 Both chr9 1360 53206907 53206979 View Lys CTT gatgagggac tagacatcac 0 0 48.31 32.77 15.54 Both chr9 1435 57067697 57067787 View Lys CTT gctatgggca ctgtgcttaa 57067734 57067740 35.92 26.80 9.12 Both chr9 1455 57506259 57506332 View Lys CTT tctggggggt taaagattac 0 0 51.81 37.66 14.15 Both chr9 1498 58522161 58522251 View Arg TCT tcaagtagct aattttgata 58522198 58522215 66.16 45.71 20.45 Both chr9 1850 57182821 57182750 View Lys CTT aaagaagggt tagagattat 0 0 54.56 40.80 13.76 Both chr9 1941 50607380 50607290 View Lys CTT gggcaaaagt ctatgctctg 50607343 50607326 42.50 36.19 6.31 Both chr9 2157 44111976 44111906 View Arg TCG tgcaaggggc tagacattgc 0 0 27.99 15.75 12.24 Both chr9 2321 37665875 37665803 View Arg CCT gctttggggg tggagcctac 0 0 41.73 36.31 5.42 Both chr9 2345 37100754 37100682 View Lys CTT ttgaaagggc cagggattac 0 0 43.78 27.28 16.50 Both chr9 2395 35799503 35799432 View Lys CTT atggaggggc tagcgcttac 0 0 40.38 21.92 18.46 Both chr9 2398 35780954 35780862 View Lys CTT ggttagaggt ccactcatag 35780917 35780896 31.96 26.86 5.10 Both chr9 2591 26713965 26713894 View Cys GCA caccagcaga tggttgcctt 0 0 77.71 58.47 19.24 Both chr9 2627 25681848 25681776 View Lys CTT gaggaggggt tagagagtac 0 0 47.52 34.42 13.10 Both chr9 2797 18487825 18487754 View Lys CTT atttgggggt tagagattac 0 0 46.66 31.16 15.50 Both chr9 2975 11836899 11836827 View Lys CTT atgtcagggt tagagattac 0 0 43.63 25.60 18.03 Both chr9 3055 8443634 8443562 View Arg CCT cgccccgcag agggcgcctt 0 0 73.88 56.31 17.57 Both chr9 3056 8442206 8442134 View Arg CCT cttgcgtgaa aggtggtctg 0 0 70.63 54.39 16.24 Both chr9 3081 7585067 7584998 View Lys CTT atgaaggggt tagagattac 0 0 38.26 22.08 16.18 Both chr9 3083 7562998 7562926 View Lys CTT gtctcagggc tagagattac 0 0 49.90 27.03 22.87 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr10 29 3487176 3487257 View Ser CGA ggtctgggga gccgcttttt 0 0 89.14 63.50 25.64 Both chr10 36 3591297 3591369 View Lys CTT tgtacagagt tagagattac 0 0 52.10 45.68 6.42 Both chr10 179 10088167 10088239 View Asn GTT ctagaggggc cagggattac 0 0 52.97 43.88 9.09 Both chr10 390 19909369 19909441 View Lys CTT aaaataggat tagattactt 0 0 50.54 31.82 18.72 Both chr10 591 28492465 28492537 View Glu CTC aaagaggggc tagaagttac 0 0 32.72 22.71 10.01 Both chr10 772 37379894 37379966 View Lys CTT tccttggggc tagagattac 0 0 45.05 27.47 17.58 Both chr10 778 38192257 38192329 View Lys CTT ctttagggag gagagattac 0 0 32.53 16.62 15.91 Both chr10 803 39420689 39420770 View Arg TCT ggcaggggac ccctgtgagg 0 0 42.27 24.79 17.48 Both chr10 921 46656479 46656551 View Lys CTT taatgagggt tatagattat 0 0 57.59 45.11 12.48 Both chr10 957 48526375 48526467 View Ile TAT gctcagcgga cgaccctttt 48526413 48526431 68.11 39.92 28.19 Both chr10 991 49712416 49712487 View Lys CTT aaaaaggggc tagagcttat 0 0 55.28 46.94 8.34 Eufind chr10 1008 50292608 50292680 View Lys CTT acagagggcc tagagattac 0 0 39.85 23.05 16.80 Both chr10 1150 59332043 59332113 View Gln TTG tctttagggt tagagcttac 0 0 38.92 32.78 6.14 Both chr10 1154 59447258 59447330 View Glu CTC agcaaggggc tgaaatctac 0 0 55.06 39.30 15.76 Eufind chr10 1267 65571837 65571909 View Lys CTT attatggggt ttggagctta 0 0 51.74 39.62 12.12 Both chr10 1315 68012909 68012980 View Asp GTC ccagtgcagt gcacaaaagc 0 0 50.92 35.53 15.39 Both chr10 1415 71954923 71954853 View Gly CCC ctgcccaaca cgagcgtttt 0 0 76.98 51.05 25.93 Both chr10 1430 71550403 71550321 View Arg TCG ttgatgggac ccccgcatgg 0 0 40.84 34.88 5.96 Both chr10 1563 65274479 65274407 View Glu TTC tttggggggc tggaggctat 0 0 62.33 46.65 15.68 Eufind chr10 1583 64954606 64954524 View Lys CTT cactgggggc tagagattac 0 0 48.21 35.24 12.97 Both chr10 1641 62016363 62016291 View Lys CTT gccaagggag cagagattac 0 0 50.10 27.29 22.81 Both chr10 1680 59456783 59456711 View Lys CTT tttggggggt tagagtttac 0 0 56.95 48.66 8.29 Eufind chr10 1718 57794839 57794767 View Lys CTT ttattggggt tagagattat 0 0 46.52 31.15 15.37 Both chr10 1809 52665483 52665411 View Lys CTT ctcttggggt tagtgtgtac 0 0 48.76 35.23 13.53 Both chr10 2721 9937854 9937782 View Lys CTT gttgaagggt cagattatac 0 0 47.14 37.97 9.17 Both chr10 2779 7266397 7266325 View Lys CTT agcctggggc tggagactac 0 0 46.56 37.55 9.01 Both chr10 2841 3993553 3993481 View Lys CTT tgtatgggac tggagattac 0 0 43.37 36.49 6.88 Both chr10 2848 3917482 3917410 View Lys CTT aggtttgagt tagagattac 0 0 53.00 44.03 8.97 Both   chr11 5 3406850 3406921 View Ala TGC ctagtaacgt gcgccggtgt 0 0 74.45 50.86 23.59 Both chr11 6 3407372 3407444 View Lys CTT gattccaggt cgaggcttgt 0 0 80.47 57.81 22.66 Both chr11 97 6538332 6538414 View Gln TTG accaggggat ctcacgtcgg 0 0 37.63 31.04 6.59 Both chr11 371 20882204 20882276 View Lys CTT acatagggac tacagattgc 0 0 46.11 25.16 20.95 Both chr11 449 25511533 25511605 View Asn GTT cgtgtgtggc tagtgattac 0 0 41.12 28.08 13.04 Both chr11 460 25807397 25807470 View Lys CTT gagccagggt tggagcctac 0 0 33.90 17.48 16.42 Both chr11 786 47483269 47483341 View Lys CTT attgagtaat tagagattac 0 0 21.00 13.68 7.32 Both chr11 795 48067971 48068043 View Lys CTT aagaagggat tagagatagc 0 0 58.18 44.08 14.10 Both chr11 1141 64135997 64136068 View Lys CTT tttcaggtgc tatagattgc 0 0 45.70 31.04 14.66 Both chr11 1265 69859467 69859539 View Lys CTT agcagggagc cagagattac 0 0 35.11 27.77 7.34 Both chr11 1298 70747253 70747325 View Lys CTT agagagtggt tagcgattac 0 0 33.47 20.43 13.04 Both chr11 1617 65878365 65878293 View Lys CTT ctttaggggc tagagcctgc 0 0 49.23 38.81 10.42 Both chr11 1775 56342700 56342611 View Lys CTT tacatggagt tcatgctcag 56342663 56342646 26.97 21.64 5.33 Both chr11 1888 53337453 53337381 View Lys CTT ggttaggtct tagaacctac 0 0 35.53 21.95 13.58 Both chr11 2155 35712923 35712851 View Sup CTA tatttggggc tagagcatac 0 0 42.70 33.82 8.88 Both chr11 2423 20980610 20980538 View Lys CTT taggaaaggc tggagataat 0 0 43.66 34.40 9.26 Both chr11 2610 8061472 8061383 View Gln CTG atataggggc ctgcaattgg 8061435 8061418 27.46 14.95 12.51 Both chr11 2734 3417209 3417137 View Val CAC tgcgctgtcg tcttttggcc 0 0 87.39 62.20 25.19 Both chr11 2735 3416747 3416675 View Lys CTT gttgctgtgt cagttccgtt 0 0 80.47 57.81 22.66 Both chr11 2736 3413536 3413464 View Val AAC tcccccgtcg gcagcgggca 0 0 86.79 61.60 25.19 Both chr11 2737 3393632 3393560 View Thr TGT ggctgtggtc gtctctgttt 0 0 79.46 56.92 22.54 Both chr11 2738 3391295 3391224 View Pro TGG ggccccggac gctttttcct 0 0 70.25 54.76 15.49 Both chr11 2739 3390910 3390838 View Val AAC gcgtgcggcg ccgagacttg 0 0 86.79 61.60 25.19 Both   chr12 72 6022088 6022162 View Lys CTT tttctggggt tggagattac 0 0 31.77 25.62 6.15 Both chr12 78 6475352 6475424 View Lys CTT ttttgggggc tagagattac 0 0 51.85 29.87 21.98 Both chr12 134 7772338 7772428 View Lys CTT tcagcagggc ctgcagtggg 7772375 7772392 28.51 22.82 5.69 Both chr12 573 31871070 31871151 View Gln TTG gaatcaggat cccctcgggg 0 0 29.10 23.04 6.06 Both chr12 682 40556613 40556685 View Lys TTT ggtaaggggt tagagcttac 0 0 49.42 36.91 12.51 Both chr12 795 48553779 48553851 View Lys CTT atctaggggg tggagtctac 0 0 57.94 49.85 8.09 Eufind chr12 946 57681899 57681971 View Lys CTT atttggggat tgaagcctac 0 0 49.19 36.25 12.94 Both chr12 992 61517730 61517802 View Arg TCT aactttagta tttgcccttt 0 0 72.76 54.50 18.26 Both chr12 1078 67216616 67216688 View Glu TTC ggtttggggc tagagattac 0 0 44.79 22.07 22.72 Both chr12 1113 68530259 68530331 View Lys CTT gcttaaggtc tagagattac 0 0 41.69 28.54 13.15 Both chr12 1150 70432290 70432370 View Arg CCT ttgtatgggt tgaagcctac 0 0 51.39 33.06 18.33 Both chr12 1261 74338557 74338474 View Gln TTG atcatgggat tcctgcatgg 74338521 74338509 38.63 31.63 7.00 Both chr12 1354 70257211 70257139 View Lys CTT ggttaaatat cagagattac 0 0 36.90 24.36 12.54 Both chr12 1373 69122246 69122174 View Lys CTT ctataggggt caaagatttt 0 0 42.75 36.61 6.14 Both chr12 1562 59149221 59149149 View Lys CTT gatgatggat gagagattac 0 0 50.12 40.20 9.92 Both chr12 1992 29992120 29992048 View Lys CTT gaagtgggac cggagcctac 0 0 50.15 33.64 16.51 Both chr12 2032 27344345 27344273 View Lys CTT gactaggggc tagagattac 0 0 39.29 29.20 10.09 Both chr12 2433 7628765 7628693 View Lys CTT gacagggagt tagagattac 0 0 58.13 50.76 7.37 Both   chr13 236 19044497 19044587 View Lys CTT aataccgggc ccatgctcag 19044534 19044551 33.91 22.14 11.77 Both chr13 270 21714935 21715025 View Lys CTT atacaggggt ccatgctcag 21714972 21714989 32.79 23.90 8.89 Both chr13 293 23116959 23117031 View Met CAT cttctagtta gtgtagcttt 0 0 68.41 45.67 22.74 Both chr13 325 24475109 24475181 View Lys CTT agttaggggt tagagattac 0 0 53.22 41.06 12.16 Both chr13 336 24738708 24738783 View Lys CTT tcttaggggc tggagattac 0 0 38.34 20.21 18.13 Both chr13 772 51443012 51443083 View Lys TTT agagaggatt tgaaggtaac 0 0 26.64 21.07 5.57 Both chr13 816 53818485 53818567 View Gln TTG ctatcgggac ccctgcaagg 0 0 43.54 35.16 8.38 Both chr13 1244 50775026 50774954 View Lys CTT agaaaacagg tggagactac 0 0 46.14 36.54 9.60 Both chr13 1505 34750573 34750501 View Lys CTT acacagaggc tagagcttac 0 0 50.36 38.14 12.22 Both chr13 1592 29184050 29183973 View Arg CCT aattcttgga tagagcttac 0 0 35.69 16.75 18.94 Both chr13 1628 26405936 26405864 View Lys CTT tgggggtggc tagagattac 0 0 43.93 36.54 7.39 Both chr13 1657 24584167 24584095 View Met CAT gcacgcaggt caatactttt 0 0 75.93 55.57 20.36 Both chr13 1685 22890904 22890832 View Lys TTT cttgttgagg aaacatgctc 0 0 64.79 55.19 9.60 Both chr13 1731 20387944 20387874 View Lys CTT cttcaggagc tagagattac 0 0 25.23 18.89 6.34 Both   chr14 2 3280440 3280519 View Lys CTT cccttcaggt tagagcttac 3280477 3280483 49.12 38.94 10.18 Both chr14 87 9785289 9785361 View Met CAT ggtaagaggt tggagcctag 0 0 62.07 52.45 9.62 Eufind chr14 133 11028474 11028546 View Lys CTT aaatagaggc tagagattac 0 0 36.71 31.49 5.22 Both chr14 317 25631435 25631519 View Glu TTC tctgaagcgc cccagggagt 25631472 25631484 39.30 28.38 10.92 Both chr14 321 25790754 25790826 View Glu CTC tgaatggggc cagagattac 0 0 57.42 38.47 18.95 Both chr14 482 36221221 36221293 View Lys CTT aaattggggt tagagtttac 0 0 38.23 31.32 6.91 Both chr14 499 37796019 37796091 View Lys CTT cattgggggc tagagattac 0 0 45.05 29.66 15.39 Both chr14 698 45977857 45977929 View Lys CTT aagacagggc tagagtttac 0 0 50.23 43.49 6.74 Both chr14 720 47541098 47541189 View Lys CTT gtgttggagt ccatgttcag 47541135 47541154 28.61 23.39 5.22 Both chr14 778 50335246 50335318 View Met CAT agtataaacg ccaagaggca 0 0 62.08 45.05 17.03 Eufind chr14 934 61299479 61299558 View Lys CTT cccttcaggt tagagcttac 61299516 61299522 47.80 38.94 8.86 Both chr14 1011 61228973 61228893 View Arg TCG aaggaaggat ccccgcatgg 0 0 44.54 39.25 5.29 Both chr14 1035 59839436 59839354 View Arg TCT ttagagaaac tcctgcaggg 0 0 48.91 38.96 9.95 Both chr14 1086 57238709 57238637 View Lys CTT gtggaggggt cagagcttac 0 0 45.32 32.17 13.15 Both chr14 1173 51651738 51651666 View Lys CTT aatgtaaaaa tagagattac 0 0 40.03 30.10 9.93 Both chr14 1332 42993239 42993167 View Lys CTT cttgtgggac tagagattac 0 0 60.83 41.34 19.49 Both chr14 1581 27435270 27435198 View Lys CTT ttctggggtt tagatattat 0 0 44.69 30.28 14.41 Both chr14 1703 19040462 19040390 View Lys CTT aatggggggc tagaaattac 0 0 41.89 31.66 10.23 Both chr14 1810 10815904 10815833 View Pro AGG aaccatcagt tggttttctt 0 0 75.92 53.85 22.07 Both chr14 1845 9780633 9780561 View Lys CTT acagaaggac cagagattac 0 0 43.78 35.91 7.87 Both chr14 1875 8900050 8899978 View Lys CTT gtctggaggt tggagattac 0 0 30.58 24.81 5.77 Both chr14 1878 8801562 8801490 View Lys CTT ttgttggggc tagagattac 0 0 43.82 30.66 13.16 Both chr14 1901 7292210 7292127 View Gln TTG caatgtgagt ccctgctcag 0 0 40.60 34.87 5.73 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr15 185 9715808 9715890 View Lys TTT aatgagggac ccctgcatgg 0 0 46.29 40.76 5.53 Both chr15 200 10000451 10000543 View Lys TTT cttgaggggt ccatactggg 10000489 10000508 36.73 30.81 5.92 Both chr15 225 11753289 11753361 View Lys CTT tttcaggggc tagaggttat 0 0 46.50 35.12 11.38 Both chr15 347 17572150 17572222 View Lys CTT aggggggggt tagaggttac 0 0 52.28 41.18 11.10 Both chr15 362 17809951 17810023 View Lys CTT ttttaggggc ttcagattac 0 0 48.60 29.27 19.33 Both chr15 396 19175425 19175497 View Lys CTT accctgagga tacagatagc 0 0 36.62 22.75 13.87 Both chr15 441 20930235 20930316 View Leu TAG ccgaggctgt ggagagcgtt 0 0 68.16 47.32 20.84 Both chr15 442 20934786 20934857 View Pro TGG ctgcagggct cagctgcggt 0 0 79.61 57.55 22.06 Both chr15 444 21071973 21072045 View Lys CTT atcctagggt tgaagattac 0 0 40.78 31.94 8.84 Both chr15 455 21369976 21370048 View Sup CTA atataggagt cagggattag 0 0 40.90 34.26 6.64 Both chr15 528 24952167 24952239 View Arg CCT gtccaggggc taatgtttac 0 0 55.12 37.90 17.22 Eufind chr15 598 29258042 29258114 View Lys CTT gttcagcggc tagagattac 0 0 31.07 25.61 5.46 Both chr15 724 37748943 37749015 View Lys CTT ctcttggggc tggagattac 0 0 48.06 26.37 21.69 Both chr15 737 38124137 38124209 View Met CAT aaatgaggat cagagattac 0 0 49.93 36.75 13.18 Both chr15 758 38841601 38841672 View Asp GTC tacgtgcagt gcacgagagc 0 0 72.92 48.38 24.54 Both chr15 783 40933157 40933228 View Asp GTC ggacaccagc gtcggcatgt 0 0 74.76 50.21 24.55 Both chr15 784 40933853 40933924 View Trp CCA agcccagcag tgggcttttt 0 0 71.65 49.85 21.80 Both chr15 825 43838375 43838447 View Lys CTT aagtaggggc tagagattcc 0 0 36.10 18.56 17.54 Both chr15 872 47019465 47019543 View Gln TTG atctagggtt cctaactcag 0 0 36.28 29.85 6.43 Both chr15 939 51431728 51431800 View Lys CTT aggcataggc cagagattac 0 0 41.67 31.97 9.70 Both chr15 996 53787791 53787863 View Lys CTT atgccatggc cagagataac 0 0 36.39 28.19 8.20 Both chr15 1140 61479413 61479483 View Gln TTG gtctaggggc tggaatctac 0 0 32.62 19.88 12.74 Both chr15 1511 52024294 52024222 View Asp ATC tatctggtgt tagagattac 0 0 46.53 37.79 8.74 Both chr15 1560 48494337 48494265 View Lys CTT gaacagaggc tagagatttc 0 0 51.02 30.86 20.16 Both chr15 1585 46902671 46902599 View Lys TTT tctctggggt tggagcctat 0 0 33.60 12.90 20.70 Both chr15 1756 35748695 35748623 View Lys CTT atgctgcggt taaagactac 0 0 60.57 47.55 13.02 Eufind chr15 1906 25004745 25004673 View Lys CTT ggggcaccac tgtaatatta 0 0 50.13 35.28 14.85 Both chr15 1977 21608593 21608521 View Lys CTT gcttgggggt tacagattac 0 0 43.07 35.62 7.45 Both chr15 2003 20976766 20976685 View Leu TAG acgccgcgtc gggttttgct 0 0 71.31 49.62 21.69 Both chr15 2004 20971808 20971727 View Leu AAG cgaggcatgt agtgggagtt 0 0 69.84 50.16 19.68 Both chr15 2007 20933253 20933163 View Tyr GTA ggcgtcgcgc gctgccttgc 20933216 20933199 71.63 45.22 26.41 Both chr15 2009 20924099 20924027 View Thr TGT cgcgggaggt gtggtccttt 0 0 79.46 56.92 22.54 Both chr15 2010 20920810 20920739 View Pro AGG gggcgtgcaa tgtttttctg 0 0 75.92 53.85 22.07 Both chr15 2417 6541179 6541107 View Gly CCC atttagggac tagagattac 0 0 35.90 30.11 5.79 Both chr15 2497 3966551 3966469 View Gln TTG tgataggggc ccctgtgagg 0 0 37.55 28.19 9.36 Both   chr16 79 9222843 9222915 View Lys CTT ccttaggggc tagagattac 0 0 42.20 31.44 10.76 Both chr16 168 12612043 12612115 View Lys CTT ataaagggat tagagattac 0 0 54.62 40.09 14.53 Both chr16 225 15624394 15624466 View Lys CTT aatttggggt tagaggtact 0 0 44.08 29.89 14.19 Both chr16 240 16721994 16722099 View Leu CAA cccgccggtt cagacctttt 16722032 16722053 61.12 40.08 21.04 Both chr16 241 16722335 16722406 View Glu CTC gagcgtgcct tggatgtttt 0 0 76.61 53.94 22.67 Both chr16 244 16996144 16996216 View Lys TTT cattaggggc cataaaaata 0 0 45.04 33.10 11.94 Both chr16 251 17277554 17277625 View Cys GCA aggcaggtgt ggctggctga 0 0 74.26 55.02 19.24 Both chr16 252 17278781 17278852 View Cys GCA ataggcaggt tccttatgtt 0 0 74.20 55.02 19.18 Both chr16 254 17394428 17394499 View Cys GCA tagtaaacca ggcctgagtt 0 0 52.77 44.22 8.55 Both chr16 255 17398590 17398661 View Cys GCA tatcaagtag gcccaattgt 0 0 74.20 55.02 19.18 Both chr16 256 17399620 17399691 View Cys GCA tctgcagcct tatttatgtg 0 0 70.58 51.40 19.18 Both chr16 257 17407653 17407724 View Cys GCA catagcagaa acttattcct 0 0 71.19 49.16 22.03 Both chr16 258 17411046 17411117 View Cys GCA taccagttaa tccttaactt 0 0 74.26 55.02 19.24 Both chr16 259 17430221 17430292 View Cys GCA acctacatca gccatttccc 0 0 74.20 55.02 19.18 Both chr16 263 17569751 17569832 View Gln TTG tttaagggat ccctgcgaga 0 0 32.71 27.54 5.17 Both chr16 638 38793803 38793875 View Met CAT tagcaccaca cagttatttt 0 0 79.63 57.06 22.57 Both chr16 647 39453576 39453666 View Lys CTT actctggggt ccatgctcag 39453613 39453630 43.16 35.27 7.89 Both chr16 966 61100620 61100692 View Gln CTG tatatggggc tggagattac 0 0 43.02 33.14 9.88 Both chr16 1361 37124613 37124541 View Lys CTT aatgtggggc tagagcttac 0 0 40.33 27.85 12.48 Both chr16 1377 36628986 36628914 View Asp ATC taatcagggc tggagcctac 0 0 53.06 35.75 17.31 Both chr16 1712 17566855 17566783 View Lys CTT aaactggggt tagagattac 0 0 41.66 34.93 6.73 Both chr16 1716 17426787 17426716 View Cys GCA tagcggctgt gtcggttttc 0 0 66.95 45.96 20.99 Both chr16 1717 17422916 17422845 View Cys GCA cccagcgtca gctggagctt 0 0 70.34 51.09 19.25 Both chr16 1718 17419312 17419241 View Cys GCA gctctagcaa acagatggct 0 0 74.26 55.02 19.24 Both chr16 1719 17414455 17414384 View Cys GCA atgtatgagt attatgcttg 0 0 65.25 50.47 14.78 Both chr16 1723 17287543 17287472 View Tyr GTA tttagcatga ttgaaaaccc 0 0 63.22 50.15 13.07 Both chr16 1785 13770628 13770555 View Gln TTG gcattgggac ccctgcatgg 0 0 37.45 28.79 8.66 Both chr16 1792 13300486 13300414 View Lys TTT tgttaggggt cataaaaata 0 0 43.62 31.68 11.94 Both chr16 1834 12382469 12382397 View Arg CCT gctcacagaa gtctcgtttt 0 0 67.28 54.18 13.10 Both chr16 1992 4799021 4798949 View Lys TTT cctgaggggc taaagattac 0 0 41.34 28.25 13.09 Both   chr17 91 9660760 9660832 View Lys CTT ttcctggggt tagagagtac 0 0 52.85 42.86 9.99 Both chr17 341 23812008 23812080 View Lys CTT cacttgggat taaagcttac 0 0 43.47 36.03 7.44 Both chr17 349 24026693 24026782 View Tyr GTA agcagcggag cttcgtacaa 24026730 24026746 75.86 49.45 26.41 Both chr17 350 24027124 24027196 View Ala AGC ggcagcaggc ctcaggtttt 0 0 63.68 41.02 22.66 Both chr17 424 28280138 28280210 View Lys CTT ttggaggggt cagagataac 0 0 54.48 38.58 15.90 Both chr17 707 42758683 42758755 View Lys CTT gcaatagggt tgaagcctac 0 0 55.80 48.28 7.52 Eufind chr17 867 54369253 54369325 View Arg CCT gtttagaggc tagagcttac 0 0 43.15 33.04 10.11 Both chr17 964 60660605 60660676 View Gln CTG cgcccccggc tcgcgggggg 0 0 68.42 45.13 23.29 Both chr17 996 61901496 61901567 View Glu CTC ttcttcagct tgacgttttt 0 0 76.61 53.94 22.67 Both chr17 997 61903566 61903637 View Gly TCC tcccggcacc tctgctgtcc 0 0 73.26 52.83 20.43 Both chr17 998 61904408 61904479 View His GTG cgggtggcgc cataatgtct 0 0 64.63 37.18 27.45 Both chr17 999 61905374 61905446 View Lys CTT accgaccagc cgagcacgtt 0 0 80.47 57.81 22.66 Both chr17 1001 61935152 61935223 View Gln CTG gccctacatg ttccctttaa 0 0 69.34 47.76 21.58 Both chr17 1002 61962603 61962676 View Asn GTT agcgccctgt gagtgagtgc 0 0 82.24 58.97 23.27 Both chr17 1004 61973824 61973896 View Val CAC cggcggcctg gccctctttc 0 0 87.39 62.20 25.19 Both chr17 1005 61977866 61977937 View His GTG agggtggcgc ctcttcccgg 0 0 64.63 37.18 27.45 Both chr17 1006 61980452 61980523 View Glu TTC tggcaccgtc tcaccttttg 0 0 72.33 49.66 22.67 Both chr17 1007 61989191 61989261 View Gly CCC tccgagcgca tcctgcctcg 0 0 79.65 59.24 20.41 Both chr17 1008 61999849 61999922 View Asn GTT ctgcccgcag agttggcctt 0 0 82.62 59.70 22.92 Both chr17 1010 62054619 62054691 View Val CAC cggcggcctg gccctctttc 0 0 87.39 62.20 25.19 Both chr17 1011 62075054 62075127 View Asn GTT gcattcgcgg tggcggcatt 0 0 77.29 54.03 23.26 Both chr17 1014 62153801 62153872 View Glu TTC gcttgtaagc tgaggtcgct 0 0 72.33 49.66 22.67 Both chr17 1263 62160382 62160312 View Gly CCC acaagtaaag cgaaggtttt 0 0 80.05 60.00 20.05 Both chr17 1264 62145879 62145806 View Asn GTT gcgtcgtctt gaaggaagtg 0 0 84.63 59.66 24.97 Both chr17 1266 62079075 62079003 View Val CAC cggcggcctg gccctctttc 0 0 87.39 62.20 25.19 Both chr17 1267 62074377 62074306 View His GTG accgtggcgc aggcttccgt 0 0 64.63 37.18 27.45 Both chr17 1268 62068518 62068445 View Asn GTT gctctcgccg gggcgttctc 0 0 57.09 43.71 13.38 Both chr17 1269 62058129 62058056 View Asn GTT ctgcctgcag aggtggcctt 0 0 82.62 59.70 22.92 Both chr17 1271 62009403 62009330 View Asn GTT acaatataaa gagtgcctga 0 0 43.79 35.34 8.45 Both chr17 1272 62003302 62003230 View Val CAC cggcggcctg gccctctttc 0 0 87.39 62.20 25.19 Both chr17 1273 61999289 61999218 View His GTG agggtggcgc ctcttcccgg 0 0 64.63 37.18 27.45 Both chr17 1274 61996782 61996711 View Glu TTC tggcaccgtc tcaccttttg 0 0 72.33 49.66 22.67 Both chr17 1275 61988053 61987983 View Gly CCC tccgagcgca tcctgcctcg 0 0 79.65 59.24 20.41 Both chr17 1276 61977306 61977233 View Asn GTT ctgcccgcag agttggcctt 0 0 82.62 59.70 22.92 Both chr17 1278 61915583 61915510 View Asn GTT gagcttccgt gtctggtctc 0 0 82.24 58.97 23.27 Both chr17 1708 36843953 36843881 View Lys CTT aggaggtggc tagacattac 0 0 30.56 13.16 17.40 Both chr17 1718 36018216 36018134 View Gln CTG ctttcgggat ttctgcatgg 0 0 43.03 34.98 8.05 Both chr17 1957 22108437 22108365 View Lys CTT tttgaggggt cagagattac 0 0 35.44 30.39 5.05 Both chr17 2041 16242447 16242357 View Arg CCT acatagaggc ccatgctggg 16242410 16242393 45.87 39.30 6.57 Both chr17 2204 6615619 6615547 View Lys CTT agtgaggggt tagaacctac 0 0 47.99 32.83 15.16 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr18 23 4230371 4230443 View Lys CTT tcataggggt tagagattcc 0 0 43.11 35.90 7.21 Both chr18 484 28904658 28904730 View Lys CTT aaaaaggggg tggagactac 0 0 60.56 47.07 13.49 Both chr18 692 40255997 40256069 View Phe GAA cccgtgagca gtggttttag 0 0 84.19 62.58 21.61 Both chr18 693 40259768 40259840 View Lys TTT ctgcctgcga gcgcttccct 0 0 83.80 62.78 21.02 Both chr18 694 40261952 40262024 View Phe GAA tctcgtcttc gggtttttgc 0 0 84.19 62.58 21.61 Both chr18 695 40266925 40266997 View Val TAC cgctgcgcgc gggggccgcg 0 0 81.05 57.69 23.36 Both chr18 787 45643528 45643600 View Lys CTT atagaggggt gagattactt 0 0 42.43 34.80 7.63 Both chr18 839 48116105 48116194 View Glu CTC aggggggggt ccatgccggg 48116141 48116160 24.37 18.54 5.83 Both chr18 895 52458916 52458988 View Ala AGC cgcccgagct cggttgaatt 0 0 58.48 35.52 22.96 Both chr18 952 54057284 54057355 View Lys CTT gacctggggt agcagattac 0 0 34.37 27.55 6.82 Both chr18 1047 57020835 57020907 View Lys CTT aaataggggc tggagcctac 0 0 50.84 34.00 16.84 Both chr18 1064 57902614 57902686 View Lys CTT taatgggaat tagagatgat 0 0 33.34 22.18 11.16 Both chr18 1216 53989716 53989635 View Ser GCT ctctacgtgg gtcgtgtttt 0 0 85.83 58.25 27.58 Both chr18 1475 40266651 40266566 View Arg TCT gccagtgcct cttttgtttt 40266614 40266602 68.58 48.13 20.45 Both chr18 1476 40266218 40266136 View Leu TAA ctcgcgggat aagacttttc 0 0 73.85 42.39 31.46 Both chr18 1477 40263038 40262966 View Lys TTT cctcttgcga gagcttattt 0 0 83.80 62.78 21.02 Both chr18 1495 39155797 39155725 View Lys CTT actagggggt tagagattat 0 0 41.00 27.84 13.16 Both chr18 1543 37494738 37494666 View Lys CTT gccagaggat tagagatttt 0 0 50.74 42.17 8.57 Both chr18 1590 35631506 35631425 View Pro TGG atttaggggc ccccacgtgg 0 0 46.35 38.04 8.31 Both chr18 1799 21548054 21547982 View Lys CTT atgtcagggt tagagattac 0 0 43.63 25.60 18.03 Both   chr19 243 18622423 18622494 View Gly TCC agtaggagga gacaaggaca 0 0 76.83 56.40 20.43 Both chr19 309 22597093 22597165 View Lys CTT cacacgggga tggaacctac 0 0 42.10 32.98 9.12 Both chr19 922 49588417 49588335 View Gln TTG gttcaggggc ccccaagggg 0 0 35.63 30.31 5.32 Both chr19 1021 41620877 41620805 View Lys CTT atggaggggt cagagatgac 0 0 42.21 30.65 11.56 Both chr19 1038 40842155 40842083 View Lys CTT gcatagaggc tacttaaaat 0 0 49.78 40.89 8.89 Both chr19 1147 33351279 33351207 View Lys CTT agggtggtac tagagattac 0 0 35.18 23.22 11.96 Both chr19 1475 10880680 10880607 View Val TAC aggggcttgc gatgcagctg 0 0 61.78 42.68 19.10 Eufind chr19 1555 5725648 5725574 View Lys CTT aggggtgggc tagagaggcc 0 0 32.34 27.09 5.25 Both   chr20 467 28963761 28963833 View Lys CTT aatgggggat tagaaattac 0 0 36.44 20.75 15.69 Both chr20 574 35716545 35716617 View Arg CCT ggttttgggt tagagcttac 0 0 43.98 30.81 13.17 Both chr20 576 35745901 35745973 View Lys CTT ttggaggggc tagagtttac 0 0 36.31 30.62 5.69 Both chr20 614 36774218 36774290 View Lys CTT tttttggggt gagagattag 0 0 46.89 35.39 11.50 Both chr20 690 42007334 42007406 View Lys CTT gattgggggt cagagcttac 0 0 41.50 35.19 6.31 Both chr20 707 42540892 42540964 View Lys CTT atttcggggc cagagattac 0 0 49.88 31.75 18.13 Both chr20 710 42654044 42654116 View Lys CTT tttagggggc taaagattac 0 0 51.55 31.51 20.04 Both chr20 792 44690827 44690899 View Lys CTT ttgttggggt tagagcatat 0 0 67.10 52.53 14.57 Both chr20 812 45792367 45792439 View Arg ACG ggccggtacg ggacgcgctt 0 0 68.07 51.18 16.89 Both chr20 897 47689882 47689954 View Lys CTT gaacaggggt tagagattgc 0 0 41.54 34.68 6.86 Both chr20 1201 57981507 57981579 View Val CAC ccctccaccg cgcttgcgtt 0 0 85.92 60.73 25.19 Both chr20 1266 60589621 60589693 View Phe GAA ctgccgcccg tccgttttgg 0 0 80.64 64.43 16.21 Both chr20 1283 60589502 60589429 View Asn GTT cggcagcgcc ctcttttgag 0 0 82.24 58.97 23.27 Both chr20 1329 57981813 57981742 View Gly TCC cttcgccgga gacaagggcg 0 0 76.83 56.40 20.43 Both chr20 1376 56610305 56610233 View Lys CTT gagtaggggc tggagcctag 0 0 45.62 35.43 10.19 Both chr20 1695 46458742 46458639 View Leu CAG agttcttggt tatccccact 46458704 46458685 35.03 21.33 13.70 Both chr20 1840 42948253 42948181 View Lys CTT agactggggt tagagaccat 0 0 47.88 37.74 10.14 Both chr20 2370 11287309 11287237 View Arg CCT gtctaggggc tagagattat 0 0 32.97 21.68 11.29 Both chr20 2504 5911159 5911087 View Lys CTT aaaatgggac cagagattgc 0 0 35.77 21.97 13.80 Both   chr21 307 24875047 24875120 View Lys CTT aagcaagggt tgaagattac 0 0 48.73 42.99 5.74 Both chr21 318 25423927 25423998 View Pro TGG ccgagtagtt ctcttttttt 0 0 76.24 54.23 22.01 Both chr21 379 28019681 28019761 View Gln TTG catttgggat ccctgcatgg 0 0 33.07 22.95 10.12 Both chr21 485 35822904 35823091 View Lys TTT ggttaggagt tcctgcatgg 35822941 35823055 36.35 27.81 8.54 Both chr21 558 38789710 38789782 View Lys CTT aggcaggagc tagagattct 0 0 45.38 35.52 9.86 Both chr21 620 41709895 41709967 View Lys CTT tgactggggc taaagattac 0 0 43.87 37.35 6.52 Both chr21 646 43094803 43094875 View Lys CTT tttagggggc tagcacttgc 0 0 36.52 26.78 9.74 Both chr21 671 44479022 44479094 View Lys CTT tgctcggggc tagagattac 0 0 43.15 37.73 5.42 Both chr21 1279 27823246 27823175 View Gln CTG ctacaggggt cagagattac 0 0 45.02 33.80 11.22 Both chr21 1301 27349880 27349808 View Lys CTT ttacaggggt tagagactac 0 0 62.86 51.81 11.05 Eufind chr21 1350 25424299 25424228 View Pro AGG ctcgcggcgc tccttttact 0 0 75.92 53.85 22.07 Both chr21 1617 8861299 8861227 View Lys CTT atcctggggt tagagattac 0 0 45.43 37.82 7.61 Both   chr22 38 4889049 4889131 View Arg TCG ctagagggcg ccctctgccc 0 0 29.76 23.75 6.01 Both chr22 112 8518919 8518991 View Lys CTT agattggggc tagagattaa 0 0 40.86 31.08 9.78 Both chr22 122 8700167 8700239 View Lys CTT aaagaggggt tagagattac 0 0 41.24 28.61 12.63 Both chr22 132 8905171 8905243 View Arg CCT tttggggggt tggagcccac 0 0 63.09 57.02 6.07 Eufind chr22 135 9005133 9005205 View Lys TTT ttctaggggc tagagattac 0 0 39.61 27.56 12.05 Both chr22 136 9049420 9049491 View Glu TTC gctcgtcgtc cgccaagcct 0 0 76.26 53.72 22.54 Both chr22 199 12512797 12512868 View Glu TTC tgccagcact cgttgtaatt 0 0 75.00 51.69 23.31 Both chr22 393 30660873 30660945 View Lys CTT ggctgggggc tagagcttac 0 0 37.69 30.01 7.68 Both chr22 589 47077927 47077999 View Lys CTT atcttggggt tagagattac 0 0 43.30 29.72 13.58 Both chr22 707 52532510 52532582 View Arg CCT ttttggtggc tagagattac 0 0 41.95 35.01 6.94 Both chr22 1008 53532277 53532205 View Lys CTT ttctgggggt tagagcttac 0 0 45.63 30.76 14.87 Both chr22 1011 53400232 53400142 View Lys CTT ttacagaggt tcacactcag 53400195 53400178 29.45 24.04 5.41 Both chr22 1090 51162251 51162179 View Lys CTT agagatgggt taaagattac 0 0 43.53 30.32 13.21 Both chr22 1151 48303046 48302974 View Phe GAA agccgaggcc acgccccccc 0 0 84.19 62.58 21.61 Both chr22 1707 4971905 4971833 View Lys CTT ttgtcgggga tggagcctac 0 0 46.40 32.29 14.11 Both chr22 1711 4892541 4892469 View Lys CTT tgcaaggggt cagagattgc 0 0 43.56 29.89 13.67 Both   chr23 414 28235177 28235249 View Glu CTC acataagggc cagcagagat 0 0 39.64 32.89 6.75 Both chr23 432 29578347 29578419 View Lys CTT actgcagggc tagacattac 0 0 37.14 29.93 7.21 Both chr23 529 35757431 35757503 View Lys CTT gctttggggc gagaggttat 0 0 40.58 24.56 16.02 Both chr23 551 36807541 36807631 View Lys CTT caacaggggt ccacattggg 36807578 36807597 35.35 29.89 5.46 Both chr23 556 37049940 37050012 View Lys CTT taggggtggt tagagtctac 0 0 52.30 38.50 13.80 Both chr23 1299 32280558 32280487 View Cys GCA ttctatcact gtacactcca 0 0 74.20 55.02 19.18 Both chr23 1300 32278004 32277933 View Cys GCA attgccatca gtgtgatctt 0 0 77.65 58.48 19.17 Both chr23 1370 27640362 27640290 View Lys TTT ctttgagggg tacttaaaaa 0 0 39.56 31.15 8.41 Both chr23 1447 21879897 21879825 View Lys CTT aacaaggagc tagacattaa 0 0 44.70 23.75 20.95 Both chr23 1573 14503061 14502989 View Lys CTT aaagtggggt tagagattac 0 0 66.08 54.00 12.08 Both chr23 1732 4925975 4925893 View Gly TCC cactcaggat ccccgcaggg 0 0 41.20 34.41 6.79 Both   chr24 16 4361400 4361481 View Ser GCT aaatgtatga cttgatctcc 0 0 83.74 54.63 29.11 Both chr24 66 7412281 7412353 View Met CAT ggggaggggc tagagattaa 0 0 43.38 30.42 12.96 Both chr24 349 22553826 22553898 View Lys CTT gatgaaggtt tgaagattat 0 0 41.43 31.17 10.26 Both chr24 465 26005936 26006007 View Lys CTT atcatggggc gagattactt 0 0 35.33 26.90 8.43 Both chr24 539 28274876 28274948 View Lys CTT ttccatgggc tagagattac 0 0 42.04 26.20 15.84 Both chr24 839 40927359 40927431 View Lys CTT tttaagggat tagagtttac 0 0 36.61 24.36 12.25 Both chr24 843 41021737 41021809 View Lys CTT agctaggggc tagagctaaa 0 0 60.26 47.65 12.61 Eufind chr24 1119 43486043 43485970 View Lys CTT aaactggggc tagagattac 0 0 43.23 27.17 16.06 Both chr24 1238 38946954 38946882 View Lys CTT ataaaagggc tagagatcac 0 0 39.71 25.04 14.67 Both chr24 1265 38333879 38333807 View Gln CTG tatttggggt tagagattac 0 0 38.39 28.68 9.71 Both chr24 1558 25985963 25985881 View Gln TTG ttccagggat ccccgcaggg 0 0 39.08 33.59 5.49 Both chr24 1679 21459433 21459361 View Gln CTG ctcctgcagc tagagattcc 0 0 37.80 23.00 14.80 Both   chr25 245 18394875 18394946 View Ala TGC ttcctgcagt cttccagaag 0 0 72.73 49.15 23.58 Both chr25 320 22014527 22014598 View Glu TTC atgcagcacc tgggagtagc 0 0 75.00 51.69 23.31 Both chr25 440 29358947 29359019 View Lys CTT gcagaggggc tagagattac 0 0 37.79 29.70 8.09 Both chr25 487 32084877 32084949 View Lys CTT tagtggggat taaagattac 0 0 55.06 46.71 8.35 Eufind chr25 596 37032491 37032563 View Lys CTT ccacatgggt cagagattac 0 0 53.95 44.84 9.11 Both chr25 773 46526378 46526449 View Lys CTT gggagggggc taaagattac 0 0 24.14 16.84 7.30 Both chr25 996 48642517 48642445 View Lys TTT ttcttggggc tagagactgc 0 0 40.61 26.13 14.48 Both chr25 1041 47357793 47357703 View Lys CTT ttccatggat ccacactcag 47357756 47357739 37.37 30.66 6.71 Both chr25 1222 40617957 40617885 View Phe GAA gcctgagcaa gtgtttttga 0 0 80.85 57.70 23.15 Both chr25 1273 37840498 37840417 View Pro TGG atgggaggac ccctgtgagg 0 0 36.45 31.03 5.42 Both chr25 1284 37571290 37571218 View Lys CTT catcaggggt tagagatgac 0 0 50.31 36.98 13.33 Both chr25 1714 12365623 12365551 View Lys CTT cacttgtggt tggagatcgc 0 0 40.70 29.01 11.69 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr26 94 8007659 8007730 View Asp GTC ggagggctca gctagaacat 0 0 72.92 48.38 24.54 Both chr26 95 8009349 8009421 View Phe GAA cccagcggcg gcccccctcc 0 0 84.19 62.58 21.61 Both chr26 96 8009938 8010009 View Asp GTC ccagcgccag gctgccggac 0 0 72.92 48.38 24.54 Both chr26 97 8012417 8012488 View Ala TGC aaaaagggag tcgtgttttt 0 0 74.45 50.86 23.59 Both chr26 252 12647846 12647918 View Lys CTT aaataggggc cagagattac 0 0 43.15 29.29 13.86 Both chr26 255 12685180 12685252 View Arg CCT aaaaaggggt tagagcttac 0 0 43.40 31.46 11.94 Both chr26 380 17812584 17812656 View Lys CTT aatactgggc tagagattac 0 0 43.98 26.61 17.37 Both chr26 401 18970101 18970173 View Lys CTT ttaaggggac tagagattat 0 0 35.31 26.30 9.01 Both chr26 418 19602652 19602724 View Lys CTT acagtccccc tggagcctac 0 0 55.09 42.30 12.79 Eufind chr26 427 19782821 19782893 View Lys CTT atcctggggc tagagattgc 0 0 57.49 36.37 21.12 Both chr26 630 27468699 27468771 View Met CAT catttggcgc tagatattat 0 0 34.90 21.67 13.23 Both chr26 672 31499953 31500023 View Gln TTG gattagaggc tagagattac 0 0 29.80 23.91 5.89 Both chr26 675 31653977 31654049 View Lys TTT tgagcagagt taaagattac 0 0 58.26 44.68 13.58 Both chr26 741 34040942 34041014 View Lys CTT tactggggat taaagctcaa 0 0 57.43 48.54 8.89 Eufind chr26 745 34063471 34063543 View Lys CTT aaagtggggt taaagttcag 0 0 48.66 33.45 15.21 Both chr26 779 35754200 35754282 View Gln TTG tttcaggggc ccccgcaggg 0 0 37.71 30.32 7.39 Both chr26 1061 33418855 33418783 View Lys CTT gggtcacggc tggagcttac 0 0 58.69 48.48 10.21 Eufind chr26 1102 31716887 31716815 View Lys CTT gtttaggggc tagcgattac 0 0 45.17 34.52 10.65 Both chr26 1126 30992408 30992336 View Lys CTT ctccagtggc tggagcctac 0 0 42.37 28.39 13.98 Both chr26 1316 21385884 21385812 View Asn GTT caagaggtgc tagagattac 0 0 26.77 17.07 9.70 Both chr26 1346 20489099 20489018 View Gln TTG tgctagggac ccctgcatgg 0 0 45.24 38.22 7.02 Both chr26 1414 17739008 17738923 View Pro TGG gccctggggc ccctacaggg 17738972 17738959 35.62 23.31 12.31 Both chr26 1688 8007421 8007350 View Ala TGC ctcacagtta cttttttttt 0 0 72.71 49.12 23.59 Both   chr27 15 3951804 3951877 View Lys CTT gggtcggcgt tagaccttac 0 0 40.93 29.77 11.16 Both chr27 213 11458970 11459042 View Lys CTT atacaagagc cagagcttac 0 0 33.18 20.14 13.04 Both chr27 289 15112072 15112146 View Lys CTT ttttaggggc gtagagatga 0 0 32.61 16.29 16.32 Both chr27 588 31098975 31099047 View Lys CTT ctaattgagt tagagattac 0 0 45.07 36.78 8.29 Both chr27 662 36556607 36556679 View Lys CTT atccaggggt tggagatact 0 0 48.64 41.78 6.86 Both chr27 689 37234685 37234757 View Lys CTT gatcctgggt tagagattat 0 0 46.79 33.47 13.32 Both chr27 879 45970333 45970405 View Arg CCT gagttggggc tatagccttc 0 0 32.56 13.95 18.61 Both chr27 1127 41711980 41711908 View Lys CTT tcctaagggt tagagagtac 0 0 44.86 37.03 7.83 Both chr27 1226 38140446 38140372 View Ser CGA cttctccaga catgcttagc 0 0 30.60 22.16 8.44 Both chr27 1279 34883734 34883663 View Gly TCC ttgcaagcag gtgcctccca 0 0 70.09 52.28 17.81 Both chr27 1458 22665788 22665716 View Lys CTT aaatgggggt tggagctcac 0 0 59.02 44.58 14.44 Eufind chr27 1571 17255589 17255517 View Lys CTT ttctaggtgt tagaatttac 0 0 57.33 43.89 13.44 Both chr27 1829 5269405 5269333 View Arg CCG acccaggggc tagagcttac 0 0 38.26 22.23 16.03 Both chr27 1861 4548316 4548244 View Lys CTT ggggtgggtc tccaggtgac 0 0 38.65 32.20 6.45 Both chr27 1862 4519676 4519595 View Gln TTG cacttgggac ccctgcatgg 0 0 34.90 28.86 6.04 Both   chr28 363 19364351 19364423 View Lys CTT agataggcgc tagtgattat 0 0 47.79 40.23 7.56 Both chr28 576 34517381 34517453 View Lys CTT ttcacggggt tagagaggac 0 0 47.28 34.55 12.73 Both chr28 604 35857531 35857621 View Lys CTT aagctggggc ctgagcatcg 35857568 35857574 30.46 23.27 7.19 Both chr28 634 37825641 37825722 View Lys CTT ttgaaggggt tagagattac 37825678 37825686 36.94 21.91 15.03 Both chr28 1099 19412458 19412386 View Lys CTT ttacaagggt aagagattac 0 0 32.08 21.83 10.25 Both chr28 1404 6814458 6814387 View Asp GTC aaaaaggttc atgacaaaaa 0 0 50.18 36.93 13.25 Both   chr29 245 18779096 18779188 View Tyr GTA ttcgcctgtc gacgctggtt 18779133 18779152 72.53 46.12 26.41 Both chr29 246 18779702 18779791 View Tyr GTA caccccgctc gaggggtggt 18779739 18779755 69.82 43.41 26.41 Both chr29 247 18779944 18780016 View Ala AGC gcccagcggt gttgctctcc 0 0 63.68 41.02 22.66 Both chr29 512 33752693 33752775 View Gln TTG atagaaggat cccctcaggg 0 0 37.33 31.63 5.70 Both chr29 533 35354211 35354283 View Lys CTT ctgaaggggc tggagccaac 0 0 35.34 26.90 8.44 Both chr29 698 42858598 42858517 View Ser AGA cgcagcagca gggcggcggc 0 0 88.01 56.90 31.11 Both chr29 807 35698794 35698723 View Lys CTT tttcgggggc tagagattac 0 0 44.44 35.15 9.29 Both chr29 1106 18778752 18778680 View Arg ACG tccccgtgga gatttttgtc 0 0 67.96 51.06 16.90 Both chr29 1116 18128485 18128413 View Lys CTT accatggggc tggggcctat 0 0 40.91 33.97 6.94 Both chr29 1143 16193366 16193294 View Lys CTT aactggggac tagagatagt 0 0 43.77 32.62 11.15 Both   chr30 168 12431780 12431852 View Lys CTT gcttaggggt tagagattac 0 0 41.14 32.51 8.63 Both chr30 243 14609431 14609502 View His GTG ccggtagctc ttgtgggaac 0 0 64.63 37.18 27.45 Both chr30 323 19579193 19579283 View Lys CTT gaccagaggt ccctgctacc 19579230 19579236 39.12 25.94 13.18 Both chr30 735 38895399 38895481 View Arg TCG aacatgggat ccctatgggg 38895435 38895446 35.39 28.36 7.03 Both chr30 1101 33195067 33194996 View Gln CTG cgcttgtggc gcggcggtct 0 0 73.65 50.36 23.29 Both chr30 1274 27048342 27048272 View Gln TTG catcaggggc tatagattat 0 0 29.59 22.55 7.04 Both chr30 1523 14620660 14620588 View Lys CTT cagttgggac tagagcttat 0 0 52.96 47.19 5.77 Both chr30 1524 14608795 14608724 View His GTG ccagtagctc ttgcgaaagg 0 0 64.63 37.18 27.45 Both chr30 1525 14607232 14607161 View His GTG ccggtagctc ttgtgggaac 0 0 64.63 37.18 27.45 Both chr30 1559 13300342 13300270 View Lys CTT ctcttggggt tacagattac 0 0 45.59 32.60 12.99 Both chr30 1653 10742406 10742325 View Ser GCT aggcttctgg atcgtgcctt 0 0 85.34 57.77 27.57 Both chr30 1759 3869774 3869702 View Lys CTT aaagaggggt tagagattac 0 0 38.22 25.68 12.54 Both   chr31 152 16922803 16922875 View Lys CTT ctcctagggt tagagattac 0 0 36.57 28.85 7.72 Both chr31 182 18893397 18893469 View Glu CTC tttctggagc tacagattac 0 0 53.88 38.01 15.87 Both chr31 418 32091833 32091905 View Lys CTT gtttctgggc ttgaagttac 0 0 50.48 32.72 17.76 Both chr31 419 32172426 32172498 View Lys CTT gcatagggat tagagatttc 0 0 49.63 37.70 11.93 Both chr31 473 34260792 34260864 View Lys CTT ttactggggt tagagcctac 0 0 50.13 37.26 12.87 Both chr31 587 38672842 38672914 View Lys CTT gttccggggc cagagtctgc 0 0 47.23 35.64 11.59 Both chr31 890 32414154 32414082 View Lys CTT atcctggagc tagagcttac 0 0 44.58 35.67 8.91 Both chr31 1046 26857133 26857061 View Lys CTT ttttgggggc tggagattac 0 0 51.90 29.62 22.28 Both chr31 1155 17163786 17163714 View Lys CTT accctggggt tagagattac 0 0 43.05 31.44 11.61 Both chr31 1333 3389251 3389169 View Gln TTG ctttaggaat ccctgcggag 3389215 3389203 39.04 29.14 9.90 Both   chr32 28 3899169 3899241 View Lys CTT actctggggc tagagattac 0 0 35.69 20.59 15.10 Both chr32 130 9416494 9416566 View Lys TTT aatccaggat tagagatcac 0 0 47.15 35.97 11.18 Both chr32 132 9454135 9454207 View Lys CTT tggagggagc gaaagattgc 0 0 49.52 31.64 17.88 Both chr32 157 10221261 10221332 View Lys CTT ggtcaggggg taaagattat 0 0 23.27 17.22 6.05 Both chr32 249 14968986 14969058 View Lys CTT aaggaggggc cagagattgc 0 0 42.18 28.90 13.28 Both chr32 315 19953430 19953502 View Lys CTT ctttcaggac tggagattac 0 0 54.09 40.31 13.78 Both chr32 531 35092450 35092522 View Lys CTT ctctcagggc tagagattac 0 0 37.58 22.75 14.83 Both chr32 538 35327027 35327098 View Lys CTT actcagaaga tagagattaa 0 0 39.69 15.33 24.36 Both chr32 705 36360990 36360918 View Lys CTT gttttggggt tggagcctac 0 0 52.76 41.99 10.77 Both chr32 713 35755972 35755900 View Lys CTT catttagggc tagaggttac 0 0 38.85 30.12 8.73 Both chr32 727 35512249 35512176 View Lys CTT taaacagggc tagagattac 0 0 46.19 25.96 20.23 Both chr32 919 23378213 23378123 View Lys CTT actgcggagt ccacactggg 23378176 23378157 31.78 24.39 7.39 Both chr32 1275 4254669 4254597 View Lys TTT aataaagggt tggaattact 0 0 36.60 27.38 9.22 Both   chr33 171 15264648 15264720 View Phe GAA aggaagcaga attcagattt 0 0 66.32 52.82 13.50 Both chr33 398 29097966 29098038 View Gln CTG ggacaggggc tagagatggc 0 0 34.87 27.21 7.66 Both chr33 559 33752478 33752550 View Lys CTT ttgtcaggga tacagattta 0 0 35.49 29.39 6.10 Both chr33 698 31228013 31227941 View Lys CTT atataggggc tgacgatcac 0 0 56.93 39.07 17.86 Both chr33 703 31071592 31071520 View Lys CTT gtctgggggt tagaggttat 0 0 39.64 34.43 5.21 Both   chr34 6 3564428 3564500 View Lys CTT tgctgggagt cagagattac 0 0 57.63 42.90 14.73 Eufind chr34 9 3616467 3616539 View Lys CTT taggtggggc tagagattac 0 0 41.16 29.12 12.04 Both chr34 214 17755719 17755802 View Gln TTG gttttgggat ccttgcatga 0 0 37.89 29.28 8.61 Both chr34 261 19640446 19640517 View Lys CTT cttttggggt tagagattac 0 0 53.82 42.35 11.47 Both chr34 538 37382252 37382324 View Val AAC aagcagcgag aaagtttttg 0 0 86.79 61.60 25.19 Both chr34 589 39179255 39179327 View Lys CTT gtcttgaggt tagagattac 0 0 54.97 45.81 9.16 Both chr34 780 39242404 39242332 View Lys CTT aaaaaggaat tagagattac 0 0 31.61 24.09 7.52 Both chr34 846 35931537 35931465 View Asn GTT ttcttggggc cagacatcgc 0 0 47.57 35.19 12.38 Both chr34 1034 22360415 22360333 View Gln TTG tgagggggat ctgcttctgt 0 0 22.29 11.97 10.32 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr35 178 13326466 13326537 View Lys CTT atggaggggt tagagatcac 0 0 55.67 45.06 10.61 Both chr35 368 20082600 20082672 View Lys CTT cactgggaat tagagatgac 0 0 40.83 30.86 9.97 Both chr35 516 27214701 27214772 View Met CAT cctaccgagg acaatttttg 0 0 68.98 40.96 28.02 Both chr35 517 27218073 27218145 View Arg TCG cgagctcaga ggagtcttta 0 0 67.10 47.22 19.88 Both chr35 518 27237244 27237316 View Arg TCG atctcaggag ttgtgtggct 0 0 69.08 49.20 19.88 Both chr35 521 27314141 27314223 View Leu CAG cttccagtga agtcgttttt 0 0 77.22 46.89 30.33 Both chr35 522 27321145 27321217 View Arg ACG cccgcatgcg gtgggcgcgc 0 0 72.37 52.49 19.88 Both chr35 523 27321711 27321783 View Val CAC ctcgcggctg ggtgcgctcc 0 0 87.39 62.20 25.19 Both chr35 524 27339440 27339511 View Ala CGC ttgcagggct agatgttttg 0 0 74.81 51.23 23.58 Both chr35 525 27340041 27340114 View Ile AAT ttgcgtagtt gtccaacgtt 0 0 80.66 62.17 18.49 Both chr35 526 27341100 27341171 View Pro AGG cagcatatgt agtttttgtg 0 0 75.92 53.85 22.07 Both chr35 527 27358559 27358648 View Tyr GTA cggtgtgatt gttcaagttt 27358596 27358612 74.69 48.28 26.41 Both chr35 528 27363827 27363914 View Tyr GTA cttccggggt cgacaatttt 27363864 27363878 77.26 50.85 26.41 Both chr35 529 27374282 27374372 View Tyr GTA caccccagat ctatgccttt 27374319 27374336 75.49 50.79 24.70 Both chr35 534 27435108 27435180 View Met CAT agtcctcacc tgtttttgtc 0 0 76.99 55.77 21.22 Both chr35 535 27452169 27452242 View Ile AAT agcagcgttc gtacgtcttt 0 0 81.94 60.76 21.18 Both chr35 536 27476904 27476997 View Ile TAT gggagcaggt tcattttcca 27476942 27476961 66.94 38.75 28.19 Both chr35 537 27533039 27533110 View Pro CGG gcacgtgggt gcttcctttt 0 0 71.93 50.03 21.90 Both chr35 538 27544576 27544657 View Ser GCT ggcgcgtcgc gttggggcat 0 0 79.32 56.09 23.23 Both chr35 540 27584678 27584749 View His GTG ccggtggcgc ggagttttaa 0 0 64.63 37.18 27.45 Both chr35 541 27594098 27594171 View Thr AGT cacaaaaaag tctttgtttc 0 0 79.08 60.98 18.10 Both chr35 542 27615069 27615149 View Ser CGA attgtgccag tatgaggctg 0 0 82.88 52.23 30.65 Both chr35 544 27628856 27628928 View Val AAC tactcagcgg agtgctactt 0 0 86.39 60.84 25.55 Both chr35 545 27647271 27647344 View Ile AAT gccaccaggt tgtggtattg 0 0 78.03 59.55 18.48 Both chr35 549 27677648 27677719 View Gln CTG cccagaggtg ttggtggcct 0 0 50.09 40.76 9.33 Both chr35 550 27679574 27679655 View Ser GCT cagctcagat gctttctcct 0 0 86.00 55.46 30.54 Both chr35 553 27819718 27819799 View Ser AGA cgagggctgt cgtgtttttc 0 0 88.01 56.90 31.11 Both chr35 554 27828516 27828597 View Ser AGA ccgcccgcgt gcgtgttttt 0 0 75.07 47.15 27.92 Both chr35 555 27835530 27835611 View Ser AGA tcgtcgtcgt acagctcctt 0 0 88.01 56.90 31.11 Both chr35 556 27836112 27836183 View Asp GTC cgccgggtcc tgctgaggtt 0 0 72.92 48.38 24.54 Both chr35 557 27847393 27847464 View Gln CTG gcgagtgtgg gactgttctc 0 0 73.65 50.36 23.29 Both chr35 558 27854259 27854340 View Ser AGA gggctcccgc gctctcccca 0 0 88.01 56.90 31.11 Both chr35 559 27860045 27860126 View Ser AGA gctttgttgt tatgttttga 0 0 62.38 32.06 30.32 Both chr35 560 27864879 27864950 View Met CAT cttgtgtgga gggctttgtt 0 0 67.60 39.59 28.01 Both chr35 561 27869451 27869532 View Ser TGA cagcgagcag gttttaccag 0 0 59.80 50.40 9.40 Eufind chr35 562 27889880 27889952 View Lys TTT ttttgtcggg aggtgtgttt 0 0 80.08 62.43 17.65 Both chr35 563 27917233 27917305 View Thr CGT aacccaccgg cctactctcg 0 0 76.84 56.63 20.21 Both chr35 564 27941393 27941486 View Ile TAT gagaaagcat tgttttcttc 27941431 27941450 67.58 39.39 28.19 Both chr35 566 27952995 27953068 View Ile AAT gtttgcaggt catgaagtgc 0 0 77.09 58.60 18.49 Both chr35 567 27990204 27990277 View Ile AAT tggattataa ttcttttaga 0 0 60.51 52.30 8.21 Both chr35 568 27996613 27996684 View Met CAT ctccccaagg aatatttttg 0 0 67.60 39.59 28.01 Both chr35 587 28686750 28686841 View Ile TAT ccgccgggcc cttttgccac 28686788 28686805 65.12 36.92 28.20 Both chr35 590 28752065 28752136 View Ala AGC cctcacggct tcggttttga 0 0 76.69 53.05 23.64 Both chr35 591 28759825 28759896 View Ala TGC aaatgtcaat gtttcttgct 0 0 72.71 49.12 23.59 Both chr35 595 28835272 28835344 View Phe GAA tttcccagcg gccgccagcg 0 0 83.87 63.95 19.92 Both chr35 596 28837255 28837328 View Thr AGT ctctcgtgtg gagggggtat 0 0 85.50 65.94 19.56 Both chr35 597 28840717 28840788 View Ala TGC ttgttgtccg gaggcatttc 0 0 71.51 46.85 24.66 Both chr35 599 28898057 28898129 View Arg CCG cccgctagcc ctgttttcct 0 0 69.88 52.79 17.09 Both chr35 602 28959112 28959216 View Leu CAA gtttccgggt cgtccttttt 28959150 28959170 67.45 41.67 25.78 Both chr35 603 28963606 28963678 View Met CAT acacgcggcc acacgttttt 0 0 74.93 54.78 20.15 Both chr35 604 28983123 28983204 View Leu AAG cccgcggaac acagttttcc 0 0 69.84 50.16 19.68 Both chr35 613 28970364 28970292 View Met CAT tgtgccacct gtaacgtttt 0 0 76.58 56.44 20.14 Both chr35 615 28963049 28962968 View Leu AAG gggcccaggc gagccttttt 0 0 69.84 50.16 19.68 Both chr35 616 28959605 28959534 View Gln CTG catcgagtgg ttccttttat 0 0 73.65 50.36 23.29 Both chr35 617 28916555 28916452 View Leu CAA tccgcagggt catacttttt 28916517 28916498 64.39 43.45 20.94 Both chr35 618 28889842 28889771 View Ala AGC cccagcgcta cttttactta 0 0 77.18 53.38 23.80 Both chr35 619 28879282 28879211 View Ala AGC gctctcctgc cttttgttcc 0 0 77.18 53.38 23.80 Both chr35 620 28871260 28871189 View Ala TGC ctcttccaga ggctttaact 0 0 46.27 34.06 12.21 Both chr35 621 28866129 28866058 View Ala TGC ttgttgtcca gaggcatttc 0 0 71.51 46.85 24.66 Both chr35 625 28835956 28835884 View Phe GAA tttcccagcg gccgcgagcg 0 0 83.87 63.95 19.92 Both chr35 626 28821955 28821884 View Ala AGC cttgtgggaa tggggccttc 0 0 77.92 53.26 24.66 Both chr35 627 28812510 28812439 View Ala CGC agggaagaaa ctctgcattt 0 0 68.51 47.51 21.00 Both chr35 628 28797174 28797103 View Ala CGC tgccccagta catcggtttt 0 0 73.07 49.49 23.58 Both chr35 629 28781116 28781045 View Ala AGC cccacgtggc gtttttcttg 0 0 81.40 56.28 25.12 Both chr35 631 28755619 28755549 View Ala TGC tgtgcatcgt cttccaggag 0 0 59.61 46.62 12.99 Eufind chr35 633 28699166 28699094 View Arg TCG aaaactattg caatttacgt 0 0 58.24 45.68 12.56 Both chr35 634 28620800 28620727 View Thr CGT ctgctcaggt ggtcttttct 0 0 84.21 63.51 20.70 Both chr35 635 28601646 28601573 View Thr TGT cacctatatg tgacttttct 0 0 79.95 60.03 19.92 Both chr35 645 28005860 28005789 View Gln TTG cacagccact tcatgagttt 0 0 68.31 52.31 16.00 Both chr35 646 27986121 27986039 View Leu TAA gtgcccagcc gagcaagttt 0 0 81.57 53.18 28.39 Both chr35 648 27960773 27960700 View Thr AGT tattgtgtct gttctgcttt 0 0 79.42 63.20 16.22 Both chr35 649 27957385 27957313 View Val AAC cttacatctg cgtgtccttc 0 0 69.36 43.29 26.07 Both chr35 650 27955769 27955688 View Ser CGA taagagaggg ttgctctttt 0 0 90.35 61.17 29.18 Both chr35 651 27954514 27954442 View Arg ACG cagcgggtgt ctgaccttgt 0 0 66.36 49.46 16.90 Both chr35 652 27910745 27910640 View Leu CAA gcgccgcagt cttccacttt 27910707 27910686 63.92 43.51 20.41 Both chr35 654 27902355 27902284 View Met CAT cccggcaggc gctagcgttt 0 0 68.98 40.96 28.02 Both chr35 655 27901112 27901040 View Lys TTT ctcgcatgag gtaaccagtt 0 0 80.08 62.43 17.65 Both chr35 656 27894037 27893966 View Asp GTC actcacgttc ataacaagcg 0 0 72.92 48.38 24.54 Both chr35 657 27876721 27876640 View Ser AGA tcacgcagct tttgagcttt 0 0 88.21 57.38 30.83 Both chr35 658 27866643 27866562 View Ser AGA gggctcccgc gctctcccca 0 0 88.01 56.90 31.11 Both chr35 659 27839527 27839446 View Ser TGA caaccagcag attttgccaa 0 0 87.07 58.74 28.33 Both chr35 660 27709722 27709650 View Lys TTT tttagcttga gcatggtctt 0 0 74.51 55.53 18.98 Both chr35 661 27703725 27703653 View Met CAT tgggacagca cagagcttat 0 0 59.11 32.92 26.19 Eufind chr35 665 27658436 27658364 View Val TAC ggcatctcca gaaaggtatc 0 0 82.69 59.32 23.37 Both chr35 667 27608746 27608674 View Val CAC tcctccaggc gcagctttcc 0 0 79.50 56.02 23.48 Both chr35 668 27600651 27600578 View Ile AAT gcacccgagt cgcgcttgtt 0 0 80.66 62.17 18.49 Both chr35 669 27590504 27590432 View Val TAC gccggcttgc gatgcggctt 0 0 86.54 61.50 25.04 Both chr35 670 27493405 27493324 View Ser GCT atggtataga gtcgtgtacc 0 0 83.73 54.46 29.27 Both chr35 671 27469841 27469769 View Arg ACG attgtcagca gcagcttctt 0 0 72.84 52.96 19.88 Both chr35 673 27462615 27462543 View Ala AGC agacgtgctt agttttgtcc 0 0 62.65 38.17 24.48 Both chr35 674 27456568 27456496 View Val AAC gttgatgtgg gtgtctgctt 0 0 82.64 57.80 24.84 Both chr35 675 27455997 27455918 View Ala AGC acatagggta cattttactg 27455960 27455954 41.79 21.32 20.47 Both chr35 676 27446985 27446913 View Ala AGC aagatatcag gcttttgcac 0 0 58.16 40.72 17.44 Both chr35 677 27381328 27381255 View Asn GTT catcgccggt gtagttgcca 0 0 82.24 58.97 23.27 Both chr35 678 27360482 27360410 View Ala AGC catctcgggt attttaggct 0 0 63.06 39.95 23.11 Both chr35 679 27337424 27337352 View Lys TTT ctctatgtga gtttgtgctt 0 0 83.80 62.78 21.02 Both chr35 680 27317263 27317190 View Thr AGT tgagcgtgtt tttgtgattt 0 0 83.05 63.49 19.56 Both chr35 681 27244195 27244124 View Trp CCA agcctgcaga gtagttttag 0 0 76.45 54.66 21.79 Both chr35 682 27231108 27231037 View Met CAT ccatggcagg tgtgttaggg 0 0 68.98 40.96 28.02 Both chr35 683 27230640 27230559 View Ser TGA gagctgtcat gagtagtgtt 0 0 88.25 57.14 31.11 Both chr35 684 27229508 27229437 View Gln TTG actcacctgt gtctgtcttt 0 0 68.31 52.31 16.00 Both chr35 685 27228977 27228906 View Gln TTG tttatgaggt gctttagttt 0 0 64.39 48.39 16.00 Both chr35 686 27222555 27222474 View Ser GCT cctcctaggt tcagttctcc 0 0 85.34 57.77 27.57 Both chr35 806 21963070 21962980 View Lys CTT tggcagagat ccaggctcag 21963033 21963016 41.36 35.88 5.48 Both chr35 807 21885281 21885211 View Lys CTT gaaatcacag agaggttact 0 0 31.55 25.67 5.88 Both chr35 926 17293091 17293019 View Lys CTT tggtgttgga taaaagctta 0 0 55.74 48.07 7.67 Eufind chr35 1121 8091997 8091925 View Glu CTC tagtgggggc tagaacttac 0 0 43.42 27.98 15.44 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr36 62 6898518 6898590 View Lys CTT ccacaggggc tagagattac 0 0 49.31 41.57 7.74 Both chr36 233 17138673 17138745 View Lys CTT acaccaaagt tagagattgc 0 0 48.04 38.02 10.02 Both chr36 368 21798668 21798750 View Sup TTA tggaagggac ccttgtgtgg 0 0 47.00 38.29 8.71 Both chr36 565 32951261 32951333 View Lys CTT atgttggggc tagaggagac 0 0 37.61 29.33 8.28 Both chr36 583 33386768 33386696 View Thr CGT tgctaggggt tggagattag 0 0 25.84 20.70 5.14 Both chr36 1076 7731812 7731740 View Lys CTT ttctcagggc tagagattac 0 0 51.61 35.51 16.10 Both chr36 1105 5610663 5610593 View Gly GCC tgccgccggc gctttttctt 0 0 75.99 61.09 14.90 Both   chr37 81 8369983 8370055 View Lys CTT ttttggggat tagggcttgc 0 0 56.62 42.88 13.74 Both chr37 210 14212334 14212406 View Lys CTT aatgaggggt tagagattac 0 0 56.77 40.59 16.18 Both chr37 298 18102712 18102784 View Lys CTT cgctggaggc tagagattac 0 0 46.82 40.11 6.71 Both chr37 322 19171999 19172072 View Lys CTT ggtggaaggc tagcgatcac 0 0 40.52 33.22 7.30 Both chr37 329 19396175 19396265 View Lys CTT gatttgggga ccacattcag 19396212 19396231 27.67 21.90 5.77 Both chr37 557 32979410 32979482 View Phe GAA gcctgaacaa gtgtttttga 0 0 79.13 55.98 23.15 Both chr37 706 25801034 25800962 View Gly CCC ttcctgaggc tagcattact 0 0 44.62 33.96 10.66 Both chr37 893 14247771 14247688 View Gln TTG cattgggggc cctagctcag 0 0 37.69 25.36 12.33 Both chr37 898 14176768 14176696 View Lys CTT ttttaggggt tggagattac 0 0 47.00 39.59 7.41 Both chr37 979 9345532 9345460 View Lys CTT aacctggggc tgtagagctt 0 0 44.77 39.71 5.06 Both   chr38 25 4049264 4049336 View Lys TTT ccctaagagc tttgtggctt 0 0 83.80 62.78 21.02 Both chr38 231 19786730 19786802 View Thr TGT gtaacgagca tttgctcgcg 0 0 83.03 60.49 22.54 Both chr38 329 24071189 24071271 View Leu CAG gagctcccgt agatcctctt 0 0 75.90 46.89 29.01 Both chr38 330 24079110 24079180 View Gly GCC tgcagcgcga acgttgcctc 0 0 64.31 48.35 15.96 Eufind chr38 331 24094349 24094420 View Asp GTC gccgccgccg gcgagacacg 0 0 72.92 48.38 24.54 Both chr38 332 24095199 24095270 View Gly TCC gggctgtgca gctggccaac 0 0 73.26 52.83 20.43 Both chr38 333 24095588 24095659 View Glu CTC agcctgacgc gcctttcttc 0 0 76.61 53.94 22.67 Both chr38 334 24102661 24102732 View Gly TCC gggctgtgca gctggccaac 0 0 73.26 52.83 20.43 Both chr38 335 24103050 24103121 View Glu CTC agcctgacgc gcctttcttc 0 0 76.61 53.94 22.67 Both chr38 336 24109222 24109293 View Asp GTC gccgccgccg gcgagacacg 0 0 72.92 48.38 24.54 Both chr38 337 24110072 24110143 View Gly TCC gggctgtgca gctggccaac 0 0 73.26 52.83 20.43 Both chr38 338 24110461 24110532 View Glu CTC agcctgacgc gcctttcttc 0 0 76.61 53.94 22.67 Both chr38 339 24113029 24113102 View Asn GTT gaaaggcgta actgaagttt 0 0 83.66 60.39 23.27 Both chr38 340 24119275 24119346 View Glu TTC cccacacccc gtttgtcctt 0 0 76.25 53.58 22.67 Both chr38 379 25836152 25836225 View Arg TCT gtgtggtgag gtcacctggc 0 0 76.29 56.97 19.32 Both chr38 473 24119983 24119912 View Glu TTC caggcgcccc gcctgttttc 0 0 76.25 53.58 22.67 Both chr38 474 24108578 24108496 View Leu CAG caggcccgcc cgcccacctt 0 0 77.22 46.89 30.33 Both chr38 475 24106982 24106912 View Gly GCC cgccaccggt gcgcgccgcc 0 0 82.15 62.58 19.57 Both chr38 476 24099507 24099437 View Gly GCC cgccaccggt gcgcgccgcc 0 0 82.15 62.58 19.57 Both chr38 477 24093743 24093661 View Leu CAG caggcccgcc cgcccacctt 0 0 77.22 46.89 30.33 Both chr38 478 24092162 24092092 View Gly GCC cgccaccggt gcgcgccgcc 0 0 82.15 62.58 19.57 Both chr38 479 24090610 24090539 View Asp GTC gccgccgccg gcgagacacg 0 0 72.92 48.38 24.54 Both chr38 480 24089765 24089694 View Gly TCC gggctgtgca gctggccaac 0 0 73.26 52.83 20.43 Both chr38 481 24089374 24089303 View Glu CTC agcctgacgc gcctttcttc 0 0 76.61 53.94 22.67 Both chr38 482 24070664 24070593 View Gly TCC ggaagcgccg agcttttttt 0 0 73.26 52.83 20.43 Both chr38 483 24070287 24070216 View Asp GTC cccgcggttt acagcgaagg 0 0 72.92 48.38 24.54 Both chr38 484 24061869 24061796 View Asn GTT nnnnnnnnct gggcgcgagc 0 0 82.24 58.97 23.27 Both chr38 576 19901563 19901491 View Lys CTT aaggaggggt taaagattac 0 0 41.45 24.92 16.53 Both chr38 646 16201294 16201210 View Lys CTT gctcagaggc ctgcactcag 16201257 16201251 36.47 24.58 11.89 Both chr38 724 10022545 10022473 View Lys CTT aaaagatggt tgtgcctatt 0 0 48.90 34.57 14.33 Both chr38 780 5704164 5704092 View Lys CTT ggacaggggt cagagattac 0 0 49.09 41.78 7.31 Both chr38 835 4049687 4049615 View Lys TTT tctcatgaga ctttgcttta 0 0 83.80 62.78 21.02 Both   chrX 119 6372555 6372627 View Lys CTT gcctagaggc tagagattac 0 0 33.60 28.08 5.52 Both chrX 250 9644280 9644352 View Arg CCT tgttagggat tacagattac 0 0 43.95 35.16 8.79 Both chrX 741 26117248 26117320 View Glu CTC ttctagaggc tggagcctac 0 0 54.97 43.77 11.20 Both chrX 947 34886215 34886287 View Lys CTT gggggggggc cagagattgc 0 0 40.77 21.14 19.63 Both chrX 1217 41707098 41707170 View Lys CTT ctattggggc aggggttact 0 0 39.13 25.27 13.86 Both chrX 1519 60720262 60720342 View Gln TTG cccttgggac ccctgcgagg 0 0 30.43 23.50 6.93 Both chrX 1757 79721476 79721548 View Lys CTT ataggatgat tgcagattac 0 0 47.19 25.09 22.10 Both chrX 1944 90384854 90384926 View Arg CCT agagaggagc tagagattac 0 0 45.83 27.04 18.79 Both chrX 2160 94884344 94884416 View Lys CTT cccatggggc tagagattac 0 0 49.83 37.77 12.06 Both chrX 2175 95161216 95161288 View Lys CTT ctacaggggt tagcgattac 0 0 45.78 31.26 14.52 Both chrX 2209 95806860 95806932 View Arg CCT gggggcgcct ttgagattac 0 0 35.53 28.70 6.83 Both chrX 2372 104493616 104493688 View Lys CTT tgctaggggt tagagcttat 0 0 56.24 47.68 8.56 Both chrX 2442 107681883 107681962 View Glu CTC gctcaagggc tggagactac 0 0 39.95 31.24 8.71 Both chrX 2683 115473695 115473767 View Lys CTT gcagagtggt tggaacctac 0 0 54.95 42.50 12.45 Both chrX 2747 117684305 117684377 View Thr CGT ggagccaggc tagagcccac 0 0 53.20 35.03 18.17 Both chrX 2796 119687323 119687395 View Lys CTT atctcggggt tagagattac 0 0 44.98 32.83 12.15 Both chrX 2935 125914889 125914960 View Lys CTT aatacatgtg tagagattac 0 0 31.67 23.76 7.91 Both chrX 3320 113444831 113444759 View Lys CTT ggccagagat tggagactac 0 0 55.07 45.24 9.83 Eufind chrX 3484 107996942 107996870 View Lys CTT atctaagggt tggagcctac 0 0 45.55 27.44 18.11 Both chrX 3549 106116993 106116921 View Lys CTT atgtagggac tagagattac 0 0 44.04 32.80 11.24 Both chrX 3799 94530889 94530817 View Arg CCT ccataggggc tagagattac 0 0 43.15 32.91 10.24 Both chrX 3851 93586018 93585947 View Lys TTT attccaagat tagagattac 0 0 29.33 21.32 8.01 Both chrX 3989 87703185 87703113 View Asn GTT acctaggggt tggagcctac 0 0 49.78 38.16 11.62 Both chrX 4121 81417564 81417483 View Sup TTA gtctagggat ccctgcaggg 0 0 37.81 32.37 5.44 Both chrX 4484 58052398 58052326 View Lys CTT gaataggggc tagagcttac 0 0 42.07 24.55 17.52 Both chrX 4851 38174145 38174072 View Lys CTT tccttggggc tagagattag 0 0 39.01 33.25 5.76 Both chrX 4884 37391839 37391769 View Gln TTG ctggagaggt tggagcctac 0 0 33.73 22.35 11.38 Both chrX 4954 35431355 35431283 View Lys CTT catttagggc tagatattac 0 0 57.18 49.82 7.36 Both chrX 5465 15320171 15320098 View Lys CTT ttttaggggc tagagattac 0 0 21.37 14.72 6.65 Both chrX 5493 14706495 14706423 View Val TAC ctaccgtcag taggtctaag 0 0 85.12 60.08 25.04 Both chrX 5535 13426322 13426228 View Gln TTG gagcaggggc tggagcctac 13426285 13426264 50.72 37.20 13.52 Both chrX 5666 9909798 9909726 View Arg CCT ttttgggggt cggggcctac 0 0 55.04 46.65 8.39 Both chrX 5866 4941740 4941668 View Lys CTT ccatagaggt tagagattac 0 0 40.55 31.40 9.15 Both   chrUn 146 35177877 35177956 View Lys CTT cccttcaggt tagagcttac 35177914 35177920 49.12 38.94 10.18 Both chrUn 169 40067659 40067738 View Lys CTT cccttcaggt tagagcttac 40067696 40067702 46.35 37.48 8.87 Both chrUn 183 41248946 41249016 View Ser CGA aattaggaac tagacttaaa 0 0 40.34 30.66 9.68 Both chrUn 271 54978622 54978694 View Lys CTT catcagggac tagggtttac 0 0 37.28 27.91 9.37 Both chrUn 547 52441870 52441798 View Lys CTT atgtcagggt tagagattac 0 0 43.63 25.60 18.03 Both chrUn 601 42536055 42535976 View Lys CTT cccttcaggt tagagcttac 42536018 42536012 49.12 38.94 10.18 Both chrUn 612 39123424 39123345 View Lys CTT cccttcaggt tagagcttac 39123387 39123381 49.12 38.94 10.18 Both chrUn 723 11776091 11776020 View Met CAT aggcggcagc tctgctcttc 0 0 67.60 39.59 28.01 Both chrUn 724 11775922 11775851 View Gln CTG agcagcagcc gtacaattgg 0 0 71.85 48.91 22.94 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.