Genomic tRNA Database: Cenarchaeum symbiosum

tRNAscan-SE Analysis of Cenarchaeum symbiosum

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>> Genome Seq

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna43 (1-75)	Length: 75 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 72.31
Seq: GGGCCGGTGGTTTAGGGGTATAATGCTGCGTTCGCAACGCAGAAGtCGGGGGTTCAATTCCCTCCCGGTCCACCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTGGTTTAGGGGTATAATGCTGCGTTCGCAACGCAGAAGTCGGGGGTTCAATTCCCTCCCGGTCCACCACTATACAGGCAA[AGCGGGA

chr.trna28 (1-77)	Length: 77 bp
Type: Ala	Anticodon: GGC at 35-37 (35-37)	Score: 73.85
Seq: GGGCCGGTCGTCTAGTCtGGTAGGATGCGCCCTTGGCATGGGCGAGAtCGAGGGTTCAAATCCCTCTCGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (1-77)	Length: 77 bp
Type: Ala	Anticodon: TGC at 35-37 (35-37)	Score: 73.68
Seq: GGGCTGATAGTATAGACtGGTAGTATACCCGCCTTGCACGCGGGGGGtCGGGGGTTCAAATCCCCCTCAGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna40 (1-75)	Length: 75 bp
Type: Arg	Anticodon: CCG at 36-38 (36-38)	Score: 52.20
Seq: GGACCCGTTGCATAGCCtGGAtAGTGCAGGTGATTCCGGATCATCAGGtCGGGGGATCGAAGCCCCCCGGGTCCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (1-75)	Length: 75 bp
Type: Arg	Anticodon: CCT at 36-38 (36-38)	Score: 59.04
Seq: GGGCTCGTGGCGCAGCAtGGAtAGCGCGGTAGCCTCCTAAGTTACAGGtCGAGGGATCGAAGCCCTCCGAGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCTCGTGGCGCAG[TGCCGCATCTGCGGCGCGCAG]CATGGATAGCGCGGTAGCCTCCTAAGTTACAGGTCGAGGGATCGAAGCCCTCCGAGCCCG

chr.trna41 (1-75)	Length: 75 bp
Type: Arg	Anticodon: GCG at 36-38 (36-38)	Score: 62.83
Seq: GGGCTCGTTGCATAGCAtGGAtAGTGCGATCGCTTGCGGAGCGATAGGtCGCCGGTTCGAATCCGGTCGGGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna23 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCG at 36-38 (36-38)	Score: 54.47
Seq: GGACTCGTTGCACAGCCtGGAcAGTGCGGGCGGCTTCGGACCGCCAGGtCGAGGGATCGAAGCCCTCCGAGCCCT
Str: >>.>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<.<<.

chr.trna44 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 60.80
Seq: GGGCCTGTAGCTCAGCAtGGAtAGAGTGTTGGACTTCTAATCCAATGGtCAAGAGATCGAAGCTCTTCAGGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna11 (1-77)	Length: 77 bp
Type: Asn	Anticodon: GTT at 35-37 (35-37)	Score: 73.53
Seq: GCCGCCCTAGCTCAGCCcGGTAGAGCGTCGGACTGTTAATCCGTTGGtCGCCAGTTCAAGTCTGGTGGGCGGCGCCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna29 (1-78)	Length: 78 bp
Type: Asp	Anticodon: GTC at 37-39 (37-39)	Score: 64.16
Seq: GCCCTTGTAGTATAGCCcGGTctAGAATTCGGCCCTGTCACGGCTGAGACGCGTGTTCAAATCCCGCCGAGGGCGCCA
Str: >>>>>>>..>>.>...........<.<<.>>>>>.......<<<<<....>>>.>.......<.<<<<<<<<<<....

chr.trna2 (1-72)	Length: 72 bp
Type: Cys	Anticodon: GCA at 33-35 (33-35)	Score: 39.47
Seq: GGTGAGATGGCAGAGCGGTTATGCGTGGGCCTGCAAAGCCTATCTaTGGGGGTTCAACTCCCTCTCTCACCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna45 (1-88)    Length: 88 bp
Type: Gln       Anticodon: CTG at 35-37 (35-37) Score: 54.93
Possible intron: 39-53 (39-53)
Seq: AGCCCGATAGTCTAGTGGCcaAGGATTCCGCGCTCTGGatctagcgagtagacACGCGGAGACGGCAGTTCGAATCTGCCTCGGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>......................<<<<<....>>>>>.......<<<<<<<<<<<<.
BHB: AGCCCGATAGTCTAGT[CTGGCCAAACCTTACGG]GGCCAAGGATTCCGCGCTCTGGATCTAGCGAGTAGACACGCGGAGACGGCAGTTCGAATCTGCCTCGGGCTA

chr.trna24 (1-71)	Length: 71 bp
Type: Gln	Anticodon: TTG at 33-35 (33-35)	Score: 66.53
Seq: AGCCCGGTGGTGTAGCGGAAGCATGGGGGCCTTTGGAGCCCCCGACCCCAGTTCGAATCTGGGCCGGGCTA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna35 (1-76)	Length: 76 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 77.81
Seq: GCTCCTGTGGTGTAGTCcGGCcaAGCATACTGCCCTCTCAAGGCAGTGAtCCCGGGTTCAAATCCCGGCGGGAGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna30 (1-94)	Length: 94 bp
Type: Glu	Anticodon: TTC at 37-39 (37-39)	Score: 54.97
Seq: GCTCCTGTGGTGTAGTCcGGTcaAGCATACTGCCCTTTCAAGGCAGTGAtCCCGGGTCCAAATtcgacagatggaagtCCCGGCGGGAGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>......................<<<<<<<<<<<<....

chr.trna25 (1-74)	Length: 74 bp
Type: Gly	Anticodon: CCC at 35-37 (35-37)	Score: 74.82
Seq: GCGGAGTTAGTCCAGCCcGGTAGGACGTCAGCTTCCCAAGCTGAAGGtCGCGTGTTCAAATCCCGCACTCCGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<.

chr.trna36 (1-74)	Length: 74 bp
Type: Gly	Anticodon: GCC at 36-38 (36-38)	Score: 58.97
Seq: GCAGTCATAGTATAGTTtGGTtATTATTCCAGCTTGCCAAGTTGGTGACCCGGGTCCAAATCCCGGTGACTGCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (1-74)	Length: 74 bp
Type: Gly	Anticodon: TCC at 36-38 (36-38)	Score: 69.45
Seq: GCAGTCATAGTATAGCTtGGTcAGTATACGGGGTTTCCAACCCTGCGACGCGGGTTCAAATCCCGCTGACTGCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (1-72)	Length: 72 bp
Type: His	Anticodon: GTG at 34-36 (34-36)	Score: 46.39
Seq: GCCTCCGTCGTATAGTGGCtAGTATAGGGGACTGTGGATCCCCGGACGGGTGTTCGATTCCCCCCGGAGGCC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>.>.......<.<<<<<<<<<<.

chr.trna12 (1-75)	Length: 75 bp
Type: Ile	Anticodon: GAT at 36-38 (36-38)	Score: 72.57
Seq: GGGCTCGTAGCTCAGCTtGGCtGGAGCGTTCGACTGATAATCGAAAGGtCATGAGTTCGAATCTCATCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (1-101)	Length: 101 bp
Type: Leu	Anticodon: CAA at 37-39 (37-39)	Score: 54.40
Possible intron: 41-53 (41-53)
Seq: GCAGGGGTATCGAAGCCcGGTcaACCGAGAAGGACTCAAGatcacggtgggtgATCCTTTCCCCCAGGGGTtCGTGGGTTCAAATCCCACCTCCTGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>....................<<<<<.>>>>..<<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna21 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 50.22
Seq: GCGGGAGTCGCCCAGCCcGGTcaAAGGCGTAAGGTTCAGGTCCTTATCTCTCAGGAGTACGTGGGTTCGAATCCCATCTCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>..<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna32 (1-85)	Length: 85 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 62.58
Seq: GCGGGTGTAGCCCAGCCtGGTcaAAGGCGCTAGCTTGAGGGGCTAGTCTCTTAGGAGTtCGTGGGTTCAAATCCCATCGCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna38 (1-101) Length: 101 bp
Type: Leu       Anticodon: TAA at 37-39 (37-39) Score: 58.03
Possible intron: 41-56 (41-56)
Seq: GGAGGAGTAATCAAGCCtGGCcaAAGATGCAGGACTTAAGatcaaaaaaataggggATCCTGTCTCCTAGGGGTtCGTGGGTTCAAATCCCACCTCCTCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......................<<<<<..>>>...<<<...>>>>>.......<<<<<<<<<<<<.
BHB: GGAGGAGTAATCAAGCCTGGCCAAAG[CAAGCGCAAGCTTTTGGAG]ATGCAGGACTTAAGATCAAAAAAATAGGGGATCCTGTCTCCTAGGGGTTCGTGGGTTCAAATCCCACCTCCTCCA

chr.trna42 (1-88)	Length: 88 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 70.68
Seq: GCGGGGGTTGCCGAGCCtGGTcaAAGGCGCAGGGCTTAGGACCCTGTCTTCTAGGAGTcCGCGGGTTCGAATCCCGCCTCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>...<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1-74)	Length: 74 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 73.41
Seq: GGGTTTATGGCTCAGCCaGGTAGAGCACCGGACTCTTAATCCGGCTGtCAGGGGTTCGAATCCCCTTAAACCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1-74)	Length: 74 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 77.86
Seq: GGGTCTGTGGCGCAGCCaGGTAGCGCACCGGACTTTTAATCCGGCTGtCGTGGGTTCGAATCCCACTAGACCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna17 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 58.86
Seq: GGGCCCGTAACTCAGCCtGGTAGAGTAACCGACTCATAATCGGTGAGcCGTGAGATCAAAGCTCGCCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna46 (1-75)    Length: 75 bp
Type: Met       Anticodon: CAT at 36-38 (36-38) Score: 67.60
Seq: AGCGGGGTGGGGAAGTCaGGTcATCCCGGCGGGCTCATAACCCGCAGAtCAGTAGTTCAAATCTACTCCCCGCTA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: AGCGGGGTGGGGAAGTCAG[ACGCATGCGGGCAAA]GTCATCCCGGCGGGCTCATAACCCGCAGATCAGTAGTTCAAATCTACTCCCCGCTA

chr.trna4 (1-74)   Length: 74 bp
Type: Met       Anticodon: CAT at 35-37 (35-37) Score: 73.45
Seq: GCCGGGATAGCTCAGCCGGTcAGAGTGCCAGACTCATAATCTGGAGGtCGTGGGATCAAAACCCACTCCCGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCGGGATAGCTCAGCCGGTcAGAGTGCCAG[CTTTCTCCAAAGGCAAG]ACTCATAATCTGGAGGTCGTGGGATCAAAACCCACTCCCGGCA

chr.trna5 (1-77)	Length: 77 bp
Type: Phe	Anticodon: GAA at 35-37 (35-37)	Score: 76.96
Seq: GCCAGGGTAGCTCAGCCtGGGAGAGCACTCGGCTGAAGACCGAGCTGtCGCGCGTTCAAATCCCGCCCCTGGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....

chr.trna19 (1-74)	Length: 74 bp
Type: Pro	Anticodon: CGG at 35-37 (35-37)	Score: 77.41
Seq: GGGGACGTGGGTTAGCTtGGTATACTGCCAGCCTCGGGCGCTGGAGAtCATGGGTTCGAATCCCATCGTCCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1-78)	Length: 78 bp
Type: Pro	Anticodon: GGG at 36-38 (36-38)	Score: 71.35
Seq: GGGACCGTCGTCTAGATtGGCcATGATGCTAGCCTGGGGTGCTAGAGGtCGCAGGTTCAAATCCTGCCGGTCCCACCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (1-77)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (35-37)	Score: 71.53
Seq: GGGACCGTAGTCTAGCTtGGCATGATTCTGGTTTTGGGTACCAGAGGcCGCAGGTTCAAATCCTGCCGGTCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna6 (1-82)	Length: 82 bp
Type: Ser	Anticodon: CGA at 33-35 (33-35)	Score: 63.68
Seq: GCCAGGTTAGCCAAGTGGTACGGCGGCCGCCTCGAAAGCGGCTGCGCGCAAGCGCtCAGGGGTTCGAATCCCTTACCTGGCG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna1 (1-87)	Length: 87 bp
Type: Ser	Anticodon: GCT at 35-37 (35-37)	Score: 55.49
Seq: GCAGGGGTCACCTAGCCtGGTAGGGTGTGGGACTGCTAATTCCATGTTCGCAAgAACACGGGGGTTCGAATCCCCCTCCCTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...>.......<...>>>>>.......<<<<<<<<<<<<....

chr.trna39 (1-101)	Length: 101 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 61.46
Possible intron: 39-52 (39-52)
Seq: GCCGGGGTCGCCTAGCCtGGTAGGGCGCGCGCCTGGAAatcagcgaccatacAGCGCGTTCTCGCAAGGGAtCGGGAGTTCGAATCTCCCTCCCGGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.....................<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna27 (1-87)	Length: 87 bp
Type: Ser	Anticodon: TGA at 35-37 (35-37)	Score: 67.01
Seq: GCAGAGGTCGCCTAGCCcGGCATGGCGCGGGCCTTGAGAGCCTGTGCGAGCAATCGCaCGGGGGTTCAAATCCCCCTCTCTGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna13 (1-77)	Length: 77 bp
Type: Thr	Anticodon: CGT at 35-37 (35-37)	Score: 78.72
Seq: GCCTCGGTGGCTCAGACcGGCAGAGCAAACGCCTCGTAAGCGTTAGGcCGTGGGTTCAAATCCCACCCGAGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna9 (1-74)	Length: 74 bp
Type: Thr	Anticodon: GGT at 35-37 (35-37)	Score: 69.75
Seq: GCTTCGATAGCTCAGCCtGGTAGAGCGTTACCTTGGTAAGGTAAAGGtCGTGGGTTCGGATCCCACTCGAAGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (1-74)	Length: 74 bp
Type: Thr	Anticodon: TGT at 35-37 (35-37)	Score: 71.41
Seq: GCCAATGTAGCTCAGCCtGGTAGAGCATTCGCCTTGTAAGCGAAAGGtCGAGGGTTCAAAGCCCTCCATTGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (1-124)  Length: 124 bp
Type: Trp       Anticodon: CCA at 35-37 (35-37) Score: 69.15
Possible intron: 39-88 (39-88)
Seq: GGGGTCGTAGCCTAGCCtGGTAGGGCGACGGGCTCCAGaggtctgtaccaagctggctgattgatgatgtaagtttggagctgcagagACCCGTAGGtCGCCGGTTCGATTCCGGTCGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.........................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGGTCGTAGCCTAGCCTGGTAGGGCGAC[AGTCTGCGAAATTACCGCCAA]GGGCTCCAGAGGTCTGTACCAAGCTGGCTGATTGATGATGTAAGTTTGGAGCTGCAGAGACCCGTAGGTCGCCGGTTCGATTCCGGTCGGCCCCA

chr.trna14 (1-123)	Length: 123 bp
Type: Tyr	Anticodon: GTA at 35-37 (35-37)	Score: 50.54
Possible intron: 39-84 (39-84)
Seq: CCCAAGCTAGCTCAGCCtGGTAGAGCTTCCGGCTGTAGatgtcggccttggctgaccgtataacagcatatcaggcatacagagACCGGGTTGtCGAAGGTTCAATTCCTTCGCTTGGGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.....................................................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna37 (1-73)	Length: 73 bp
Type: Val	Anticodon: CAC at 34-36 (34-36)	Score: 62.54
Seq: GGACCGGTTGTCTAGTGGTcAGGATGACGCACTCACACTGCGTAGGtCATGGGTTCGACCCCCATCCGGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGACCGGTTGTCTAGTGGTCAGGATGACGCACTCACACTGCGTA[AGGGCATCTGCCCCGCGAC]GGTCATGGGTTCGACCCCCATCCGGTCCA

chr.trna33 (1-75)	Length: 75 bp
Type: Val	Anticodon: GAC at 33-35 (33-35)	Score: 63.51
Seq: GGGCCGGTAGTCTAGTGGTAGGATACCGCCTCGACACGGCGGTGAtCGTGAGTTCAAATCTCTCTCGGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna8 (1-75)	Length: 75 bp
Type: Val	Anticodon: TAC at 36-38 (36-38)	Score: 75.75
Seq: GGGCTCATAGTCCAGTTcGGTcATGACGTCGCCCTTACACGGCGAAGAtCCGGGGTTCAAATCCCCGTGGGCCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.