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tRNAscan-SE Analysis of Cenarchaeum symbiosum

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tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 1 40076 40162 View Ser GCT cccaccgcgt tcaaaaactt 0 0 55.49 35.56 19.93   chr 2 44636 44707 View Cys GCA gtggcaccgc tcaatactgt 0 0 39.47 15.89 23.58   chr 3 49044 49188 View Trp CCA taatacacgt catcatttat 49103 49152 69.15 56.64 12.51   chr 4 166051 166141 View Met CAT ggcctttcgt tacaccacgg 0 0 73.45 54.49 18.96   chr 5 208161 208237 View Phe GAA gccaatccgt caatgaaact 0 0 76.96 59.11 17.85   chr 6 237386 237467 View Ser CGA gggggtggct ccccaatatg 0 0 63.68 28.88 34.80   chr 7 252274 252350 View Ala TGC ccgcttccga ttgcatcttt 0 0 73.68 55.01 18.67   chr 8 257330 257404 View Val TAC gcagctcggc tgtgtgatat 0 0 75.75 62.40 13.35   chr 9 348416 348489 View Thr GGT gatcctgcat ccttttctta 0 0 69.75 42.35 27.40   chr 10 415416 415489 View Thr TGT cgaatcctgt tcaacactac 0 0 71.41 46.34 25.07   chr 11 890180 890256 View Asn GTT gaaccgtgct acctgtatat 0 0 73.53 52.60 20.93   chr 12 1081410 1081484 View Ile GAT ccccaccggt tccgtcattg 0 0 72.57 51.00 21.57   chr 13 1120893 1120969 View Thr CGT accggatcgt attatccctg 0 0 78.72 59.02 19.70   chr 14 1207300 1207422 View Tyr GTA cacggatcgt cataaaactg 1207338 1207383 50.54 18.27 32.27   chr 15 1422268 1422368 View Leu CAA tgaaccatct gaggcaccgg 1422308 1422320 54.40 30.98 23.42   chr 16 1563345 1563440 View Arg CCT gggccccgtt catcaggcgc 0 0 59.04 36.83 22.21   chr 17 1685642 1685715 View Met CAT caagatcacg cctgatccag 0 0 58.86 40.85 18.01   chr 18 1696091 1696164 View Lys TTT tgccggcggc cccatcctga 0 0 77.86 62.95 14.91   chr 19 1706810 1706883 View Pro CGG gccgctccac tgcaattaga 0 0 77.41 55.37 22.04   chr 20 1833600 1833677 View Pro GGG caccctacgg tcatatgttc 0 0 71.35 49.16 22.19   chr 21 1939325 1939409 View Leu CAG ccctccccgt ccctcatttg 0 0 50.22 36.34 13.88   chr 22 1957438 1957511 View Lys CTT aaatttctgt ccttctagat 0 0 73.41 52.04 21.37   chr 23 1949445 1949371 View Arg TCG tggttgaaac tgcagttcta 0 0 54.47 32.65 21.82   chr 24 1933091 1933021 View Gln TTG caggtgcgga ctagtaatcc 0 0 66.53 40.57 25.96   chr 25 1898688 1898615 View Gly CCC cggatcgcga ctgctacatc 0 0 74.82 52.20 22.62   chr 26 1751304 1751231 View Gly TCC gcaccctgtt tctaatgacg 0 0 69.45 51.67 17.78   chr 27 1717345 1717259 View Ser TGA cgtgtatact accagaacta 0 0 67.01 46.06 20.95   chr 28 1705623 1705547 View Ala GGC cggttttcgc tcaaatagtg 0 0 73.85 58.51 15.34   chr 29 1695948 1695871 View Asp GTC gtacatctgc taaccaaaac 0 0 64.16 53.76 10.40   chr 30 1679647 1679554 View Glu TTC tgcagcccgt agatttattt 0 0 54.97 30.08 24.89   chr 31 1623767 1623696 View His GTG cccgtgcgtg cctaaaatat 0 0 46.39 25.93 20.46   chr 32 1613335 1613251 View Leu GAG ggggcccggt cccatggatc 0 0 62.58 47.91 14.67   chr 33 1562513 1562439 View Val GAC cgggcccact caatttccta 0 0 63.51 51.18 12.33   chr 34 1252724 1252648 View Pro TGG cagcgctacc gccgcgacac 0 0 71.53 49.00 22.53   chr 35 1167077 1167002 View Glu CTC gcggcaatta ttatttctag 0 0 77.81 61.46 16.35   chr 36 1160691 1160618 View Gly GCC gcgtgctcgg ttaaacaccc 0 0 58.97 37.41 21.56   chr 37 1103685 1103594 View Val CAC caggaccgcc tcactataat 0 0 62.54 43.65 18.89   chr 38 348329 348210 View Leu TAA cccgtgtcgg ctagccccgt 348270 348255 58.03 33.06 24.97   chr 39 271207 271107 View Ser GGA cccactttgt cactatccgg 271169 271156 61.46 42.98 18.48   chr 40 237570 237496 View Arg CCG ggatataggc tgatatgcat 0 0 52.20 33.51 18.69   chr 41 168887 168813 View Arg GCG taagacagtc cacattatcc 0 0 62.83 45.74 17.09   chr 42 28709 28622 View Leu TAG gcgctgaccc acccggctta 0 0 70.68 53.68 17.00   chr 43 21889 21797 View Ala CGC taccaccgcg acccgcggca 0 0 72.31 57.82 14.49   chr 44 3402 3328 View Arg TCT aaccgccgca ccccacaaac 0 0 60.80 37.53 23.27   chr 45 372598 372702 View Gln CTG aggcgcctgt ctgtactatc 372653 372667 54.93 28.56 26.37   chr 46 1989512 1989423 View Met CAT tcctcgtctc tcaaacacac 0 0 67.60 33.64 33.96   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.