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tRNAscan-SE Analysis of Caenorhabditis briggsae (cb3 Jan 2007)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrI 1 69168 69240 View Pseudo TAG ttccttcgtg aaatgttttt 0 0 22.32 40.50 -18.18 Eufind chrI 2 273921 273994 View Pseudo ACC tgctgtcctg aagttttttt 0 0 24.97 47.34 -22.37 Eufind chrI 3 276060 276132 View Pseudo ATC ttgccctcct aaactttttt 0 0 23.67 50.84 -27.17 Eufind chrI 4 923765 923836 View Ala AGC gtcggtgtgc gaaacgtttt 0 0 69.87 40.11 29.76 Both chrI 5 1356798 1356869 View Gly TCC gatgttctat gattttttga 0 0 73.31 46.98 26.33 Both chrI 6 1360400 1360471 View Gly TCC gatgttctat gattcccctt 0 0 73.31 46.98 26.33 Both chrI 7 1368248 1368319 View Gly TCC ctttcagtgt gatttctttt 0 0 73.31 46.98 26.33 Both chrI 8 1371243 1371314 View Gly TCC ctttcagtgt gatttctttt 0 0 73.31 46.98 26.33 Both chrI 9 1372534 1372604 View Gly TCC aacatagcgt gatttctttt 0 0 62.11 38.65 23.46 Eufind chrI 10 1931185 1931256 View Cys GCA gcaaaaatgt agtttttttt 0 0 71.06 51.98 19.08 Both chrI 11 2107390 2107463 View Pseudo ??? ggttttcact attcgttttt 0 0 20.64 38.31 -17.67 Eufind chrI 12 2133915 2133986 View Pseudo TTT ctaataatgt ttttttgttt 0 0 22.91 31.11 -8.20 Eufind chrI 13 2135703 2135769 View Pseudo TTT tcatttgtgt gaagactttt 0 0 23.43 23.43 0.00 Eufind chrI 14 2304984 2305053 View Pseudo TCC gtgcttatgc aaactctttt 0 0 23.43 25.99 -2.56 Eufind chrI 15 2595256 2595343 View Pseudo ATT gcttccagct acatcttttt 2595292 2595309 22.97 31.97 -9.00 Eufind chrI 16 2680008 2680085 View SeC TCA tttctagatt ttgaaagagc 0 0 40.20 0.00 0.00 Eufind chrI 17 3795349 3795420 View Glu TTC ttatcgccgc gtctctattt 0 0 79.04 54.46 24.58 Both chrI 18 4542458 4542529 View Pro AGG ttcataacgt acttatcgtt 0 0 75.14 53.21 21.93 Both chrI 19 4545656 4545732 View Arg ACG atgaaaatgt aaactatttt 0 0 57.34 43.02 14.32 Eufind chrI 20 4600928 4600999 View Thr TGT tgcgcgaatc gttcgttttt 0 0 55.20 47.01 8.19 Eufind chrI 21 5865018 5865089 View Trp CCA tttctctcgt aatttttttt 0 0 71.83 47.21 24.62 Both chrI 22 6502462 6502545 View Ile TAT cagaatatgt ataccttttt 0 0 73.89 49.33 24.56 Both chrI 23 6505500 6505583 View Ile TAT cagaatatgc ataccttttt 0 0 68.76 48.86 19.90 Both chrI 24 6506662 6506745 View Ile TAT cagaatatgt ataccttttt 0 0 73.89 49.33 24.56 Both chrI 25 6509561 6509644 View Ile TAT cagaatatgt ataccttttt 0 0 68.04 51.16 16.88 Both chrI 26 6511932 6512015 View Ile TAT cagaatatgt ataccttttt 0 0 51.15 28.19 22.96 tRNAscan chrI 27 6521385 6521468 View Ile TAT cagaatatgc atactttttt 0 0 59.69 38.72 20.97 Both chrI 28 6642801 6642884 View Ile TAT cagaatatgt ataccttttt 0 0 73.89 49.33 24.56 Both chrI 29 6643457 6643540 View Ile TAT caaaatatgt ataccttttt 0 0 69.80 45.54 24.26 Both chrI 30 6744901 6744984 View Ile TAT cagaatatgc atactctttt 0 0 74.93 49.05 25.88 Both chrI 31 6746285 6746368 View Ile TAT cagaatatgt atatcttttt 0 0 73.89 49.33 24.56 Both chrI 32 6748639 6748722 View Ile TAT cagaatatgt atatcttttt 0 0 57.86 37.66 20.20 Both chrI 33 6785191 6785278 View Ile TAT cagaatatgt ataccttttt 0 0 66.71 49.22 17.49 Both chrI 34 7324597 7324668 View Ala CGC ttttttttgt aacgcttttt 0 0 76.66 53.19 23.47 Both chrI 35 8653114 8653185 View Glu TTC gtgtgacaga gtttcttttt 0 0 79.04 54.46 24.58 Both chrI 36 8739420 8739490 View Gly GCC agaatttgtc attctttttt 0 0 78.62 62.98 15.64 Both chrI 37 8763394 8763475 View Leu AAG gatttccatc gtttcttttt 0 0 65.79 35.99 29.80 Both chrI 38 8825386 8825459 View Ile AAT agtcgacaag aatctttttt 0 0 85.74 64.62 21.12 Both chrI 39 8834761 8834834 View Ile AAT aagtgtttgt aatctttttg 0 0 85.74 64.62 21.12 Both chrI 40 8917091 8917162 View Gly TCC agaaacatcc ttatcttttt 0 0 68.19 45.83 22.36 Both chrI 41 9360688 9360760 View Arg ACG cgttcactat aaattctttt 0 0 71.61 57.29 14.32 Both chrI 42 9431007 9431079 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrI 43 9752145 9752216 View Glu CTC tcttccacgc gatgtttttt 0 0 80.86 53.32 27.54 Both chrI 44 9778589 9778661 View Pseudo ??? ttaataaagt tttcctctgt 0 0 26.40 43.47 -17.07 Eufind chrI 45 10006989 10007061 View Lys TTT tctcctcgtt ggattctttt 0 0 77.10 61.67 15.43 Both chrI 46 10173235 10173307 View Lys CTT tcctgtcgcc tatgcttttc 0 0 80.31 62.84 17.47 Both chrI 47 10234974 10235055 View Ser CGA ccctcggcat aatcgttttt 0 0 81.04 49.48 31.56 Both chrI 48 10341178 10341106 View Lys CTT agctgtcgcc tatgcttttt 0 0 80.31 62.84 17.47 Both chrI 49 10004135 10004063 View Lys TTT tcctcccgtt ggattctttt 0 0 77.10 61.67 15.43 Both chrI 50 10000882 10000810 View Lys TTT tctccttgtt ggatgctttt 0 0 69.89 59.16 10.73 Eufind chrI 51 9836464 9836393 View Pseudo ATC attttaaatg aacccttttt 0 0 23.92 34.18 -10.26 Eufind chrI 52 9751212 9751141 View Glu CTC tctcccacgc gatgattttt 0 0 80.86 53.32 27.54 Both chrI 53 9747778 9747707 View Glu CTC tctcccacgc gatgtttttt 0 0 80.86 53.32 27.54 Both chrI 54 9745145 9745074 View Glu CTC cgtcccacgc gatgcttttt 0 0 80.86 53.32 27.54 Both chrI 55 9595690 9595619 View Glu TTC tctcgcccaa gtttcctttt 0 0 72.72 50.08 22.64 Both chrI 56 9595269 9595197 View Arg TCT accccgttgt aatgtttttt 0 0 72.93 58.95 13.98 Both chrI 57 9480700 9480619 View Leu AAG gtgaaaatgt gtttcttttt 0 0 65.79 35.99 29.80 Both chrI 58 9063068 9062987 View Leu AAG ggtatggcac gtttcttttt 0 0 65.79 35.99 29.80 Both chrI 59 8916940 8916869 View Gly TCC aaatatatgc ttattctttt 0 0 73.31 46.98 26.33 Both chrI 60 8862516 8862444 View Lys CTT ccctttcgcc gatgtttttt 0 0 80.31 62.84 17.47 Both chrI 61 8862071 8861988 View Tyr GTA aacattcgtg attctttttt 8862034 8862024 76.75 50.12 26.63 Both chrI 62 8824783 8824710 View Ile AAT tgctcacacg aatctttttt 0 0 85.74 64.62 21.12 Both chrI 63 8643187 8643116 View Glu TTC tgctgtcgga gtttcttttt 0 0 79.04 54.46 24.58 Both chrI 64 8311660 8311589 View Cys GCA tcatttgtgt agttattttt 0 0 71.06 51.98 19.08 Both chrI 65 8311330 8311259 View Cys GCA attcacatgt agttttttta 0 0 71.06 51.98 19.08 Both chrI 66 8096074 8095991 View Leu TAA tgttttcgtt aagtcttttg 0 0 51.41 25.80 25.61 Both chrI 67 8094139 8094056 View Leu TAA tgttttcgtt aagtcttttg 0 0 51.41 25.80 25.61 Both chrI 68 7981488 7981405 View Tyr GTA gtctttcgtg ttgccttttg 7981451 7981441 76.75 50.12 26.63 Both chrI 69 7980031 7979948 View Tyr GTA atctttcgtg attgcttttt 7979994 7979984 53.70 32.02 21.68 Both chrI 70 7946125 7946054 View Gln CTG cttttctgcc atctcttttt 0 0 76.86 53.92 22.94 Both chrI 71 7945216 7945144 View Arg ACG attgaacacc aaatcttttt 0 0 71.61 57.29 14.32 Both chrI 72 7944601 7944529 View Arg ACG atcaaaacgt aaatcatttt 0 0 71.61 57.29 14.32 Both chrI 73 7493072 7493009 View Pro AGG cggattacaa gcccacttat 0 0 44.10 25.48 18.62 Eufind chrI 74 7437017 7436946 View Pro AGG tgaacaccga acttaatttt 0 0 75.14 53.21 21.93 Both chrI 75 6665886 6665803 View Ile TAT cagaatatgt atactttttt 0 0 73.89 49.33 24.56 Both chrI 76 6642252 6642169 View Ile TAT cagaatatgt ataccttttt 0 0 73.89 49.33 24.56 Both chrI 77 6520859 6520776 View Ile TAT cagaataagt ataccttttt 0 0 73.89 50.94 22.95 Both chrI 78 6510161 6510078 View Ile TAT cagaatatgt atacattttt 0 0 73.89 49.33 24.56 Both chrI 79 6501949 6501866 View Ile TAT cagaatatgc ataccttttt 0 0 73.89 50.94 22.95 Both chrI 80 4332572 4332372 View Leu TAG ctctttcagc gtttgaaaga 4332536 4332407 46.76 27.78 18.98 Eufind chrI 81 2945439 2945366 View Ile AAT gaagagatgt aatctttttt 0 0 85.74 64.62 21.12 Both chrI 82 2812827 2812755 View Arg ACG ttcgaaatgt aaactttttt 0 0 71.61 57.29 14.32 Both chrI 83 2811850 2811778 View Arg ACG tgcgcaacat aaacattttt 0 0 71.61 57.29 14.32 Both chrI 84 2441330 2441258 View Pseudo AGA tgcgaaaagt aatagttttt 0 0 24.10 45.06 -20.96 Eufind chrI 85 2310719 2310648 View Gly TCC ttctctcgcc gaactctttt 0 0 73.31 46.98 26.33 Both chrI 86 2304894 2304823 View Gly TCC tcctctcgcc gaactctatt 0 0 73.31 46.98 26.33 Both chrI 87 1630274 1630203 View Gly TCC gaagttctat gaattccttt 0 0 73.31 46.98 26.33 Both chrI 88 1371143 1371072 View Gly TCC ttcaacatgc gatttgtttt 0 0 73.31 46.98 26.33 Both chrI 89 1368035 1367964 View Gly TCC atgagtgtgc gatttctttt 0 0 73.31 46.98 26.33 Both chrI 90 1360208 1360137 View Gly TCC gatgttctat gagttccctt 0 0 73.31 46.98 26.33 Both chrI 91 1356665 1356594 View Gly TCC gatgttctat catctctttt 0 0 73.31 46.98 26.33 Both chrI 92 1287385 1287314 View Gly TCC gatgttctat gagttccctt 0 0 73.31 46.98 26.33 Both chrI 93 1037299 1037228 View Trp CCA ctctaagcgt aatgcttttt 0 0 71.83 47.21 24.62 Both chrI 94 1031685 1031604 View Leu AAG tatcatcggc gttctctttt 0 0 65.79 35.99 29.80 Both chrI 95 167281 167211 View Pseudo TGC acctttgtct caaaaccctt 0 0 26.17 30.89 -4.72 Eufind chrI 96 70552 70481 View Pseudo TTT cctcgttggt tttctttttt 0 0 27.33 38.56 -11.23 Eufind chrI 97 22868 22796 View Lys TTT gtgctacgtg tgattttttt 0 0 69.67 59.19 10.48 Eufind   chrI_random 1 135242 135313 View Pseudo TTG tactcgctgc ttcttttttg 0 0 29.69 37.67 -7.98 Eufind chrI_random 2 144500 144572 View Pseudo AAG tgtccccagc tttttctttt 0 0 28.17 35.97 -7.80 Eufind chrI_random 3 1181435 1181506 View Ile AAT gctataaaaa attttttttt 0 0 54.38 48.80 5.58 Eufind chrI_random 4 1907868 1907940 View Lys CTT cactgtcgcc tatgtttttt 0 0 80.31 62.84 17.47 Both chrI_random 5 1941590 1941661 View Pro CGG ctccaccagt aaatttttgt 0 0 75.76 55.52 20.24 Both chrI_random 6 2249745 2249826 View Ser GCT aaagaaatgt aatctctttt 0 0 81.69 49.76 31.93 Both chrI_random 7 2311868 2311943 View Pseudo GAA tccaaaaagt acttcttttt 2311901 2311907 21.25 41.35 -20.10 Eufind chrI_random 8 2517156 2517228 View Pseudo TTG ccaccttggt atagtttttt 0 0 26.16 34.56 -8.40 Eufind chrI_random 9 2620366 2620438 View Pseudo TTG ccaaggagtt ttttcacttt 0 0 22.19 26.40 -4.21 Eufind chrI_random 10 2630003 2630078 View Pseudo ATC ttcctcagtg aacttgtttt 0 0 34.67 35.08 -0.41 Eufind chrI_random 11 2645609 2645681 View Pseudo ATC ttcctcagtg aactcttttt 0 0 25.16 41.58 -16.42 Eufind chrI_random 12 2700635 2700706 View Gly TCC tcttcatgcc gaactctttt 0 0 73.31 46.98 26.33 Both chrI_random 13 2793781 2793853 View Arg ACG aatcaaatgt aaaactcttt 0 0 71.61 57.29 14.32 Both chrI_random 14 2797369 2797440 View Pro AGG gtgcaaatgt acttactttt 0 0 75.14 53.21 21.93 Both chrI_random 15 2880102 2880174 View Lys CTT ttctctcgcc tatgcttttt 0 0 80.31 62.84 17.47 Both chrI_random 16 2909455 2909527 View Lys CTT ttctctcgcc tatgtttttt 0 0 80.31 62.84 17.47 Both chrI_random 17 2960453 2960524 View Gly TCC ctccgtcgca taacattttt 0 0 73.31 46.98 26.33 Both chrI_random 18 2996943 2997014 View Thr TGT ctctcacacc aatttttttt 0 0 75.24 52.60 22.64 Both chrI_random 19 3177375 3177455 View Pseudo ??? ttctctgaac aaatcttttt 0 0 28.93 29.46 -0.53 Eufind chrI_random 20 3180892 3180964 View Phe GAA tagcttgtgt atttcttttt 0 0 81.50 57.90 23.60 Both chrI_random 21 3326088 3326159 View Glu CTC cagaatcaga gaagcttttt 0 0 74.36 46.22 28.14 Both chrI_random 22 3498899 3498816 View Ile TAT cagaatgggt ataacctttt 0 0 76.14 51.20 24.94 Both chrI_random 23 3498371 3498288 View Ile TAT cagaatgggt ataacctttt 0 0 80.59 55.52 25.07 Both chrI_random 24 2959680 2959609 View Gly TCC tcctcccggc caagattttt 0 0 73.31 46.98 26.33 Both chrI_random 25 2920433 2920361 View Lys CTT ttttctcgcc tatgcttttt 0 0 80.31 62.84 17.47 Both chrI_random 26 2910374 2910302 View Lys CTT ttctcccgcc tatgcttttt 0 0 80.31 62.84 17.47 Both chrI_random 27 2871684 2871612 View Lys CTT ttctcccgcc tatgtttttt 0 0 80.31 62.84 17.47 Both chrI_random 28 2800708 2800636 View Arg TCG gggagtgtgt aaattttttt 0 0 73.16 56.41 16.75 Both chrI_random 29 2777728 2777657 View Gly TCC cttgaagtgt gatctctttt 0 0 69.06 46.54 22.52 Both chrI_random 30 2700182 2700111 View Gly TCC ctcctgtggc gaactctttt 0 0 73.31 46.98 26.33 Both chrI_random 31 2644787 2644717 View Pseudo TTG cctcacagtc aaaatctttt 0 0 21.20 37.78 -16.58 Eufind chrI_random 32 2530378 2530307 View Pseudo TTG caaaatattt aatctttttt 0 0 49.12 64.62 -15.50 Eufind chrI_random 33 2527385 2527314 View Pseudo TTA caaaacttcc aatatttttt 0 0 41.03 54.95 -13.92 Eufind chrI_random 34 2518512 2518438 View Pseudo ATG tgtacggcta aatcgttttt 0 0 26.48 38.60 -12.12 Eufind chrI_random 35 2517054 2516982 View Pseudo CTC tttccacagt gtatatattt 0 0 21.37 36.91 -15.54 Eufind chrI_random 36 2253699 2253618 View Ser GCT aaagaaatgt aatatctttt 0 0 81.69 49.76 31.93 Both chrI_random 37 1939403 1939331 View Lys CTT ccctgtcgcc tattttttta 0 0 80.31 62.84 17.47 Both chrI_random 38 1908638 1908557 View Leu AAG tttcctcgtc gttctgtttt 0 0 65.79 35.99 29.80 Both chrI_random 39 1906901 1906829 View Lys CTT ccctgtcgcc tatgttttta 0 0 80.31 62.84 17.47 Both chrI_random 40 1129513 1129441 View Lys TTT tctttcgggg tgatcttttt 0 0 82.53 60.79 21.74 Both chrI_random 41 1006724 1006653 View Cys GCA ctcaatgtgt agttcttttt 0 0 71.06 51.98 19.08 Both chrI_random 42 456098 456025 View Pseudo TTT tctctccgtt aagttctttt 0 0 31.17 49.93 -18.76 Eufind chrI_random 43 135923 135854 View Pseudo TTG gctcgaagcg tttttctttt 0 0 20.03 21.28 -1.25 Eufind chrI_random 44 97346 97275 View Gln CTG ttgcaatgtc atcgcttttt 0 0 76.86 53.92 22.94 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrII 1 376370 376488 View Leu CAA ttctttcgta gaattttttg 376408 376442 60.38 42.98 17.40 Both chrII 2 490198 490270 View Arg TCG ggtaaaatgt aaattttttt 0 0 73.16 56.41 16.75 Both chrII 3 679027 679100 View Pseudo TTG cgcccgcggc ataggttttt 0 0 20.79 29.86 -9.07 Eufind chrII 4 853171 853252 View Ser CGA tcccctcgtg aatccttttt 0 0 80.95 49.41 31.54 Both chrII 5 1158315 1158385 View Pseudo TTG cttggaatgc tcttcctttt 0 0 35.84 38.46 -2.62 Eufind chrII 6 1162919 1162990 View Pseudo TTG tttaaactgc ttttcttttt 0 0 26.86 46.02 -19.16 Eufind chrII 7 1229528 1229600 View Pseudo GTC gggtaagtgt caagtttttt 0 0 29.43 34.91 -5.48 Eufind chrII 8 1641558 1641629 View Pseudo ??? tctcgccgtt agttcttttt 0 0 31.13 45.44 -14.31 Eufind chrII 9 2269235 2269306 View Asp GTC ctcggccatg aaatcttttt 0 0 66.04 41.34 24.70 Both chrII 10 2273842 2273916 View Asp GTC tttcagcagt aaatcttttt 0 0 34.51 26.80 7.71 Eufind chrII 11 2385484 2385555 View Pseudo TTC tcggtgttgt aattcttttt 0 0 25.91 36.10 -10.19 Eufind chrII 12 2533489 2533560 View Ala AGC gtggtcgtgc gaatcttttt 0 0 69.87 40.11 29.76 Both chrII 13 2917777 2917848 View Met CAT gggaggtgtg attctttttg 0 0 61.67 43.30 18.37 tRNAscan chrII 14 3841548 3841619 View Trp CCA tagttttcat aagtttttta 0 0 71.83 47.21 24.62 Both chrII 15 3962928 3963011 View Gly CCC tcctttgtgc aatcattttt 0 0 67.25 32.92 34.33 Eufind chrII 16 3972134 3972217 View Gly CCC tcctttgtgc aatccttttt 0 0 67.71 34.38 33.33 Both chrII 17 3976130 3976212 View Gly CCC nnnnnnntgc aacccttttt 0 0 64.54 40.52 24.02 Eufind chrII 18 4094640 4094723 View Leu TAA ttaagcatgc gtatttcttt 0 0 68.68 42.89 25.79 Both chrII 19 4378473 4378541 View Pseudo GCC tttttcgaca caattctttt 0 0 23.56 24.46 -0.90 Eufind chrII 20 4670748 4670819 View Thr AGT cttcccgtcc ccgaacttct 0 0 85.45 60.72 24.73 Both chrII 21 4928304 4928385 View Leu TAG cgcatatgtc attctttttt 0 0 71.00 41.72 29.28 Both chrII 22 4994334 4994405 View Glu TTC ttcactcaga gttcctttta 0 0 74.30 52.98 21.32 Both chrII 23 5105508 5105579 View Ala AGC gaaatcgtgc gaatcttttt 0 0 69.87 40.11 29.76 Both chrII 24 5106256 5106327 View Ala TGC atgtttatgt gatacacttt 0 0 72.66 45.20 27.46 Both chrII 25 5108234 5108305 View Ala AGC gaaatcgtgc gaatcttttt 0 0 69.87 40.11 29.76 Both chrII 26 5406842 5406913 View Gln TTG agcgaccgcc atgctttttt 0 0 74.78 50.13 24.65 Both chrII 27 5943985 5944056 View His GTG ttcgcttttg ttggtttttt 0 0 74.47 48.59 25.88 Both chrII 28 7814367 7814439 View Arg TCG gataaaatat aaatcttttc 0 0 67.47 53.70 13.77 Both chrII 29 8045903 8045977 View Met CAT atgtttcgtg attctttttt 0 0 52.01 39.93 12.08 Eufind chrII 30 9109117 9109200 View Leu TAA ttgtttcgcc tagctttttt 0 0 75.74 44.84 30.90 Both chrII 31 9295430 9295502 View Val TAC ggtttctatc atgttttgta 0 0 80.93 55.27 25.66 Both chrII 32 9964540 9964612 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrII 33 10952706 10952778 View Val TAC agttcccagc ctcctttttg 0 0 78.68 56.38 22.30 Both chrII 34 10965911 10965983 View Val TAC agttcccagc ctcctttttg 0 0 78.68 56.38 22.30 Both chrII 35 11074309 11074379 View Glu CTC tttctcatgc gaagcttttt 0 0 71.97 45.05 26.92 Both chrII 36 11122387 11122458 View Glu CTC tttcccatgc gatttctttt 0 0 73.28 48.27 25.01 Both chrII 37 11370951 11371023 View Met CAT gagaatcgat attccttttt 0 0 74.19 53.61 20.58 Both chrII 38 11722982 11723054 View Lys CTT tgcaatcgac tatttttttt 0 0 80.31 62.84 17.47 Both chrII 39 11724418 11724490 View Lys CTT tgccatcgcc tatttttttt 0 0 80.31 62.84 17.47 Both chrII 40 11724564 11724635 View Thr AGT attaccacgc ccgagctttt 0 0 85.45 60.72 24.73 Both chrII 41 11862907 11862978 View Asp GTC gtctgtcgtg gaactttttt 0 0 66.04 41.34 24.70 Both chrII 42 11904227 11904310 View Leu CAG tggaaaacaa aactctttta 0 0 71.68 39.97 31.71 Both chrII 43 12380489 12380608 View Leu CAA tcctcggtgt gatatttttg 12380527 12380562 60.51 43.12 17.39 Both chrII 44 12412560 12412631 View Ala TGC tacgccgtgt gatttttttt 0 0 72.66 45.20 27.46 Both chrII 45 12769016 12769087 View Gly TCC ttccctcgac tatttatttt 0 0 73.31 46.98 26.33 Both chrII 46 13176915 13176986 View Pro TGG ttaaaaatgt attctttttt 0 0 73.10 56.32 16.78 Both chrII 47 13406316 13406388 View Pseudo GGC accgattttt aattttttgt 0 0 25.90 37.32 -11.42 Eufind chrII 48 13414943 13415015 View Pseudo GGC accgattttt aaaatttttt 0 0 24.35 39.17 -14.82 Eufind chrII 49 13415209 13415281 View Pseudo GAC accgattttc aaattgtttg 0 0 26.02 41.79 -15.77 Eufind chrII 50 13415498 13415570 View Pseudo GAC accgattttc aaattgtttt 0 0 26.02 44.63 -18.61 Eufind chrII 51 13418930 13419002 View Pseudo AGG tccgattttt aaattatttg 0 0 24.66 39.17 -14.51 Eufind chrII 52 13419214 13419286 View Pseudo GCC gttttttttt aaatggtttc 0 0 24.90 43.30 -18.40 Eufind chrII 53 13864094 13864022 View Pseudo GGC cccggctttt acattttttt 0 0 20.65 40.21 -19.56 Eufind chrII 54 13426850 13426778 View Pseudo GAC accgattttt aaattttttt 0 0 20.86 42.51 -21.65 Eufind chrII 55 13418379 13418307 View Pseudo GGC accgattttt aattttttcg 0 0 32.74 40.75 -8.01 Eufind chrII 56 13418091 13418019 View Pseudo GGC accgattttt aattttttcg 0 0 33.79 47.71 -13.92 Eufind chrII 57 13416968 13416896 View Pseudo GAC accgattttt aaatcttttg 0 0 25.71 39.91 -14.20 Eufind chrII 58 13416333 13416261 View Pseudo GGC accgattttt aattttttat 0 0 27.22 37.52 -10.30 Eufind chrII 59 13275227 13275146 View Ser AGA ctcttcgtgt ttaaccattt 0 0 80.44 48.88 31.56 Both chrII 60 13213660 13213579 View Ser AGA tcttcagtgt ttaacctttt 0 0 80.44 48.88 31.56 Both chrII 61 12911224 12911153 View Thr CGT gggagtgtca atgctttttg 0 0 75.77 56.54 19.23 Both chrII 62 12758643 12758572 View Gly TCC ttctctcgtc gatctttttt 0 0 73.31 46.98 26.33 Both chrII 63 12591866 12591793 View Ile AAT ctccttcgtg aatctttttt 0 0 85.74 64.62 21.12 Both chrII 64 12409739 12409620 View Leu CAA tcctcggtgt gatgttttgc 12409701 12409666 60.51 43.12 17.39 Both chrII 65 12265129 12265058 View Arg CCG gttttcgaac atcacctttt 0 0 49.29 41.25 8.04 Both chrII 66 11862798 11862725 View Ile AAT acagatctgt aacttttttt 0 0 85.74 64.62 21.12 Both chrII 67 11785330 11785258 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrII 68 11774855 11774783 View Lys CTT tgctatcgcc cagatttttt 0 0 80.31 62.84 17.47 Both chrII 69 11774705 11774634 View Thr AGT gccaccacgc ccgaaatttt 0 0 85.45 60.72 24.73 Both chrII 70 11716016 11715944 View Lys CTT tgccatcgcc tatgtttttt 0 0 80.31 62.84 17.47 Both chrII 71 11714836 11714765 View Thr AGT tcgcccagga ccgaattttt 0 0 68.68 52.13 16.55 Both chrII 72 11714746 11714678 View Lys CTT tttttagcag cttatatttt 0 0 53.75 24.90 28.85 Eufind chrII 73 11318099 11318028 View Glu CTC ttcttcacgc gatgcttttt 0 0 68.60 46.70 21.90 Eufind chrII 74 11096050 11095978 View Lys CTT tattatatcc gatgtctttt 0 0 56.56 47.28 9.28 Both chrII 75 11072954 11072883 View Glu CTC tttctcatgc gatttctttt 0 0 80.86 53.32 27.54 Both chrII 76 9820697 9820624 View Ile AAT ttgttttgtg aatattttgc 0 0 85.74 64.62 21.12 Both chrII 77 9571544 9571473 View Ala AGC tgatacagcg ggatgttttt 0 0 62.58 32.81 29.77 Both chrII 78 9095472 9095401 View Glu TTC gtgcatcaga gttccttttc 0 0 77.65 53.06 24.59 Both chrII 79 9086333 9086260 View Ile AAT atgtctatcg attttttttt 0 0 78.45 57.30 21.15 Both chrII 80 8485237 8485165 View Lys CTT tgcaatcgcc gatgttttta 0 0 80.31 62.84 17.47 Both chrII 81 8483434 8483362 View Lys CTT tgccatcgaa gatgtttttt 0 0 80.31 62.84 17.47 Both chrII 82 8323770 8323698 View Lys TTT tccctcaatg tgatgttttg 0 0 77.10 61.67 15.43 Both chrII 83 7939364 7939289 View Pseudo TCG ggaaaagtgt aaattttttt 0 0 40.46 46.35 -5.89 Eufind chrII 84 7525676 7525595 View Ser AGA gttctctcgt ttaacttttg 0 0 80.44 48.88 31.56 Both chrII 85 7195675 7195603 View Lys CTT tcaaatcgcc tgatttttta 0 0 56.19 57.16 -0.97 Eufind chrII 86 5951603 5951531 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrII 87 5108022 5107951 View Ala AGC tagaacatgc gaatcttttt 0 0 69.87 40.11 29.76 Both chrII 88 5104172 5104105 View Ala AGC gcgcgaatca tcttttttct 0 0 33.31 23.28 10.03 Eufind chrII 89 4412913 4412842 View Thr AGT cctcctgttc ccgaactttt 0 0 85.45 60.72 24.73 Both chrII 90 4315178 4315107 View Pseudo TTT ctgcttgttg tatccttttt 0 0 25.48 57.24 -31.76 Eufind chrII 91 4091974 4091891 View Leu TAA tgaagcatgc gtatttcttt 0 0 75.74 44.84 30.90 Both chrII 92 3975781 3975698 View Gly CCC tcctttgtgc aatctttttt 0 0 79.21 46.95 32.26 Both chrII 93 3971981 3971898 View Gly CCC tcctttgtgc aatccttttt 0 0 73.18 39.85 33.33 Both chrII 94 3962785 3962703 View Gly CCC tcctttgtgc aatccttttt 0 0 53.11 31.95 21.16 Both chrII 95 2626325 2626253 View Asn GTT tctctcgcct aaactatttt 0 0 73.73 50.90 22.83 Both chrII 96 2525754 2525683 View Ala AGC gggatcgtgc ggatcttttt 0 0 69.87 40.11 29.76 Both chrII 97 1970799 1970717 View Lys CTT ttctctcgcc gatgtttttt 0 0 57.46 37.97 19.49 Eufind chrII 98 1493457 1493386 View Pseudo ??? tccaaaaatt acattttctg 0 0 23.51 40.87 -17.36 Eufind chrII 99 1172383 1172312 View Asp GTC tcctcccgtg aatcgttttt 0 0 58.11 33.42 24.69 Both chrII 100 1162807 1162736 View Pro TGG gaaacattat atttactttt 0 0 77.13 55.19 21.94 Both chrII 101 1158205 1158134 View Pro TGG gaaagaaagt atttactttt 0 0 77.13 55.19 21.94 Both chrII 102 903698 903627 View Pseudo ACC aactcaatgt aatctctttt 0 0 34.08 42.30 -8.22 Eufind chrII 103 903032 902955 View Pseudo GTC agtgaagagt aaacccattt 0 0 21.59 43.39 -21.80 Eufind chrII 104 768298 768227 View Gln TTG aacgccgtgc atcggttttt 0 0 74.78 50.13 24.65 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrII_random 1 165178 165256 View Ser TGA aattggtcaa gatttcgttt 0 0 26.33 16.96 9.37 Eufind chrII_random 2 170236 170317 View Ser CGA tcctttccat aatttctttt 0 0 81.04 49.48 31.56 Both chrII_random 3 913243 913315 View Pseudo TTG aagcgcccgc tataggtttt 0 0 23.69 29.81 -6.12 Eufind chrII_random 4 1448263 1448334 View Thr AGT tctctcgtcc ccgaactttt 0 0 85.45 60.72 24.73 Both chrII_random 5 1611680 1611761 View Leu AAG agtcgccggc gtttcctttt 0 0 65.79 35.99 29.80 Both chrII_random 6 1682766 1682836 View Gly GCC ttcaaaacaa attctttttt 0 0 78.62 62.98 15.64 Both chrII_random 7 1686522 1686592 View Gly GCC ttctaaacaa attctttttt 0 0 78.62 62.98 15.64 Both chrII_random 8 1833744 1833814 View Gly GCC ttctctcatc atcctttttg 0 0 75.99 62.06 13.93 Both chrII_random 9 1884813 1884885 View Lys CTT tgccatcgcc tatgtttttt 0 0 80.31 62.84 17.47 Both chrII_random 10 1885993 1886064 View Thr AGT tcgcccagga ccgaattttt 0 0 68.68 52.13 16.55 Both chrII_random 11 1886083 1886151 View Lys CTT tttttagcag cttatatttt 0 0 53.75 24.90 28.85 Eufind chrII_random 12 1887838 1887909 View Thr AGT gtaacaacgc ccgaactttt 0 0 85.45 60.72 24.73 Both chrII_random 13 1888520 1888592 View Lys CTT tgcaatcgcc tatatttatt 0 0 80.31 62.84 17.47 Both chrII_random 14 1889858 1889929 View Thr AGT gtaacaacgc cagaactttt 0 0 85.45 60.72 24.73 Both chrII_random 15 1931286 1931357 View His GTG tgttctctcg ttgtttttta 0 0 74.47 48.59 25.88 Both chrII_random 16 1930501 1930430 View His GTG ggcactcttg tttcgttttt 0 0 74.47 48.59 25.88 Both chrII_random 17 1828721 1828651 View Gly GCC ttctcttatc attcctattt 0 0 69.29 59.81 9.48 Both chrII_random 18 1627137 1627066 View Ala AGC tttgctcgcc gaactctttt 0 0 63.55 34.21 29.34 Both chrII_random 19 1567435 1567354 View Leu AAG ttccaccggc gttctctttt 0 0 65.79 35.99 29.80 Both chrII_random 20 1195866 1195795 View Glu CTC tctctcacgc tatgtttttt 0 0 80.86 53.32 27.54 Both chrII_random 21 1194940 1194869 View Glu CTC tctcccacgc gatgtctttt 0 0 80.86 53.32 27.54 Both chrII_random 22 869394 869313 View Leu AAG tattcgatgt gttccttttt 0 0 65.79 35.99 29.80 Both chrII_random 23 160597 160526 View Pseudo GGC tgggtgatgg tgcgatgaat 0 0 24.84 30.19 -5.35 Eufind chrII_random 24 154565 154484 View Ser CGA ctccaccggt aattcatttt 0 0 81.04 49.48 31.56 Both chrII_random 25 116136 116055 View Leu AAG aaataaatgt gttctttttt 0 0 65.79 35.99 29.80 Both chrII_random 26 114944 114863 View Leu AAG tcgaaaatgt gttctctttt 0 0 65.79 35.99 29.80 Both   chrIII 1 446693 446766 View Ile AAT gtcggtgtgt aattgttttt 0 0 85.74 64.62 21.12 Both chrIII 2 805052 805123 View Thr TGT cgtctcatgt attttctttt 0 0 71.40 50.55 20.85 Eufind chrIII 3 911494 911575 View Ser GCT ttctcccggt gatgtctttt 0 0 78.23 42.86 35.37 Both chrIII 4 914013 914085 View Pseudo CTG ggggagaggt aatttttttt 0 0 26.41 35.89 -9.48 Eufind chrIII 5 929325 929396 View Glu CTC acctccacgc taagctattt 0 0 79.12 51.58 27.54 Both chrIII 6 930402 930473 View Glu CTC ttccccacgc taaggttttt 0 0 80.86 53.32 27.54 Both chrIII 7 953484 953556 View Pseudo TCC tactcaaatg aactcttttt 0 0 31.68 39.97 -8.29 Eufind chrIII 8 955216 955287 View Glu CTC ttccccacgc gaagcttttt 0 0 80.86 53.32 27.54 Both chrIII 9 1318442 1318523 View Ser CGA tttcgccagt aacctttttt 0 0 81.04 49.48 31.56 Both chrIII 10 1320077 1320158 View Ser AGA tctccaccgt ttaatctttt 0 0 80.44 48.88 31.56 Both chrIII 11 1365658 1365731 View Ile AAT aagacaatgt aactcttttt 0 0 85.74 64.62 21.12 Both chrIII 12 1381360 1381433 View Ile AAT aggaatatgt aatacttttt 0 0 85.74 64.62 21.12 Both chrIII 13 1565961 1566034 View Ile AAT cttctttgtg aattgttttt 0 0 85.74 64.62 21.12 Both chrIII 14 1599180 1599252 View Pseudo TTC aagcgagtga aattgtttta 0 0 27.89 42.64 -14.75 Eufind chrIII 15 1725587 1725658 View Gly TCC ctctcactgc taattttttt 0 0 73.31 46.98 26.33 Both chrIII 16 1736308 1736378 View Pseudo TCG caaggtgtgt aatccttttt 0 0 36.38 50.56 -14.18 Eufind chrIII 17 1765442 1765513 View Glu CTC tttgaatgtc tatatttttt 0 0 60.86 53.50 7.36 Eufind chrIII 18 1766115 1766183 View Pseudo TTG gcgaggtgtg cttaaagtcg 0 0 26.68 38.34 -11.66 Eufind chrIII 19 1789195 1789268 View Ile AAT ttcgtttgtg aactcatttt 0 0 85.74 64.62 21.12 Both chrIII 20 2086301 2086382 View Leu AAG ccccaccggc gtttcttttt 0 0 65.79 35.99 29.80 Both chrIII 21 2396393 2396464 View Pseudo GCC tgctccattg gaaggctttt 0 0 21.23 30.57 -9.34 Eufind chrIII 22 2510430 2510502 View Pseudo AGT gtcgcctctt tacttttttc 0 0 25.28 28.51 -3.23 Eufind chrIII 23 2650672 2650738 View Pseudo GCC cctcctcggc tttttcatat 0 0 36.55 36.63 -0.08 Eufind chrIII 24 2709527 2709597 View Gly GCC gagaaaatgc attgttttct 0 0 78.62 62.98 15.64 Both chrIII 25 3210308 3210379 View Pseudo TTT gctctctgtt actttctttg 0 0 26.65 36.05 -9.40 Eufind chrIII 26 3630416 3630486 View Thr CGT aacaaacgtc ttcgtttttt 0 0 66.00 50.62 15.38 Eufind chrIII 27 3637275 3637346 View Thr CGT tgatttcgaa ttcgtttttt 0 0 75.77 56.54 19.23 Both chrIII 28 4917828 4917898 View Gly GCC ttatttcatc atctttttaa 0 0 78.62 62.98 15.64 Both chrIII 29 5018301 5018376 View Undet ??? cggaaattaa gatttctttt 0 0 38.94 28.40 10.54 Eufind chrIII 30 5710019 5710100 View Ser AGA ttctctcgca ttaaaccttt 0 0 80.44 48.88 31.56 Both chrIII 31 5945266 5945337 View Pro TGG aaatccatgc attcttttct 0 0 65.01 48.38 16.63 Both chrIII 32 6232895 6232967 View Pseudo ??? gaaaattgtt gaggattact 0 0 20.11 33.40 -13.29 Eufind chrIII 33 6307513 6307596 View Ala CGC tgcttttgta tatgcttttt 0 0 57.48 27.99 29.49 Both chrIII 34 6658594 6658666 View Met CAT taaaaacgcc agcttttttg 0 0 75.42 53.48 21.94 Both chrIII 35 7258341 7258413 View Arg ACG tcccaaacgt aaaggttttg 0 0 71.61 57.29 14.32 Both chrIII 36 7259107 7259179 View Arg ACG gaggaaatgt aaactctttt 0 0 62.42 52.10 10.32 Both chrIII 37 7802161 7802233 View Lys TTT tacactagag tgagtttttt 0 0 77.10 61.67 15.43 Both chrIII 38 8157461 8157532 View Pro TGG attattttgc attctttttt 0 0 77.13 55.19 21.94 Both chrIII 39 8323570 8323641 View Thr AGT gcaccacagc ccgaactttt 0 0 85.45 60.72 24.73 Both chrIII 40 9908444 9908515 View Pseudo TTG tgcatattgt gaactttttg 0 0 27.68 53.66 -25.98 Eufind chrIII 41 10317093 10317164 View Arg ACG ggtcaaacgt aaatcccttt 0 0 59.38 47.95 11.43 Eufind chrIII 42 10348062 10348134 View Pseudo TTG tacctcaatg ttttgtcttt 0 0 32.14 47.09 -14.95 Eufind chrIII 43 10365430 10365502 View Pseudo ATC agacaaccgt acttcttttt 0 0 27.24 32.55 -5.31 Eufind chrIII 44 10368405 10368476 View Pseudo TTG cacaactttg ttttcttttt 0 0 22.43 42.68 -20.25 Eufind chrIII 45 10388444 10388516 View Arg TCG cagcaaatgt aaatcttttg 0 0 73.16 56.41 16.75 Both chrIII 46 10864119 10864190 View Pro TGG tccaaaatgt attctttttt 0 0 77.13 55.19 21.94 Both chrIII 47 10878677 10878748 View Thr TGT aagacggtgt attgtctttt 0 0 78.78 55.79 22.99 Both chrIII 48 10881947 10882018 View Thr TGT tccacgctgt gctctttttt 0 0 78.78 55.79 22.99 Both chrIII 49 10925753 10925823 View Pseudo TTC ctctagtgac aaacctgttt 0 0 29.50 32.50 -3.00 Eufind chrIII 50 11001818 11001889 View Pseudo GCC accgctacag aactcttttt 0 0 20.63 46.11 -25.48 Eufind chrIII 51 11016793 11016864 View Pseudo ACC tttcaagaag aacttctttt 0 0 26.36 47.57 -21.21 Eufind chrIII 52 11017664 11017736 View Pseudo TGG aacctcagtg atgtcttttt 0 0 22.33 35.56 -13.23 Eufind chrIII 53 11113588 11113660 View Pseudo TTT cttcttttat taaatctttt 0 0 27.18 42.32 -15.14 Eufind chrIII 54 11143945 11144018 View Pseudo TTT attcacaatt aacatcattt 0 0 30.19 43.90 -13.71 Eufind chrIII 55 11158360 11158431 View Glu TTC ctctcgccgc gtttcctttt 0 0 79.04 54.46 24.58 Both chrIII 56 11166102 11166173 View Glu TTC ctcctgccgc gtttcttttt 0 0 79.04 54.46 24.58 Both chrIII 57 11439381 11439462 View Ser AGA tcctcaccgt ttaagttttt 0 0 80.44 48.88 31.56 Both chrIII 58 11617809 11617892 View Tyr GTA ttctcccgtg ttcttttctt 11617846 11617856 66.16 39.53 26.63 Both chrIII 59 12286137 12286220 View Leu CAG agtaaaacaa aatctttttg 0 0 70.08 36.83 33.25 Both chrIII 60 12516910 12516982 View Pseudo TTG ttcacttgtt aatctttttt 0 0 34.54 45.25 -10.71 Eufind chrIII 61 12557805 12557876 View Cys GCA ttccgtgtgt agttcttttt 0 0 71.06 51.98 19.08 Both chrIII 62 12601193 12601264 View Ala AGC gtgaacgtgc gaatcttttt 0 0 69.87 40.11 29.76 Both chrIII 63 12631755 12631827 View Pseudo TTT ttgcaatagt aaactctttt 0 0 21.17 43.55 -22.38 Eufind chrIII 64 12634150 12634222 View Pseudo TTT ttatcaactt aatccttttt 0 0 20.27 33.63 -13.36 Eufind chrIII 65 12799147 12799219 View Phe GAA ttcctcgtgt atttcctttt 0 0 80.05 55.38 24.67 Both chrIII 66 13128556 13128628 View Phe GAA tcttttgtgt atttcttttt 0 0 80.05 55.38 24.67 Both chrIII 67 13161930 13162001 View Pro CGG ggtaaccagt aaaccttttt 0 0 75.76 55.52 20.24 Both chrIII 68 13163009 13163081 View Phe GAA atgcgagtgt atctcttttc 0 0 80.05 55.38 24.67 Both chrIII 69 13172074 13172146 View Phe GAA ctaatgcgat atctcttttt 0 0 60.92 44.99 15.93 Both chrIII 70 13173413 13173494 View Ser AGA cctccgccgt gattaatttt 0 0 80.44 48.88 31.56 Both chrIII 71 13175869 13175950 View Ser AGA tcttagccgt gattatcttt 0 0 80.44 48.88 31.56 Both chrIII 72 13176631 13176712 View Ser AGA cccctcccgt gatttctttt 0 0 80.44 48.88 31.56 Both chrIII 73 13206307 13206388 View Ser CGA ttccaccggt aacttttgct 0 0 83.08 52.43 30.65 Both chrIII 74 13184029 13183910 View Leu CAA cactatcgta gatatttttg 13183991 13183956 59.88 42.48 17.40 Both chrIII 75 13173979 13173898 View Ser AGA cctccaccgt gatttcttct 0 0 80.44 48.88 31.56 Both chrIII 76 13170734 13170662 View Phe GAA tccccgttgt attccttttt 0 0 74.94 53.76 21.18 Both chrIII 77 13167542 13167470 View Phe GAA tccctggtgt atttcctttt 0 0 52.42 32.08 20.34 Both chrIII 78 13164842 13164770 View Phe GAA tccctgttgc gtttcttttt 0 0 80.05 55.38 24.67 Both chrIII 79 13158269 13158197 View Phe GAA ggaggtgtgt gtttcttttt 0 0 80.05 55.38 24.67 Both chrIII 80 13157517 13157445 View Phe GAA ttcccccgtc atcttgtttt 0 0 80.50 56.53 23.97 Both chrIII 81 13118211 13118139 View Phe GAA gttctcgtgt attccttttt 0 0 80.05 55.38 24.67 Both chrIII 82 12875287 12875216 View Pro TGG gtgaaatgtc attatttttg 0 0 77.13 55.19 21.94 Both chrIII 83 12842062 12841981 View Ser TGA tgccaaatgt gatttctttt 0 0 82.64 53.58 29.06 Both chrIII 84 12600706 12600635 View Cys GCA ttcgatgtgt agtgcttttt 0 0 71.06 51.98 19.08 Both chrIII 85 11354152 11354080 View Phe GAA tccttgacgc atttgttttt 0 0 80.05 55.38 24.67 Both chrIII 86 11258122 11258051 View Pseudo TTT tttcaaagtt aaattctatg 0 0 30.59 52.66 -22.07 Eufind chrIII 87 11229236 11229155 View Ser GCT ctccttcagt aatctctttt 0 0 78.23 42.86 35.37 Both chrIII 88 11226116 11226035 View Ser GCT aacgcattgt aatttctttt 0 0 78.23 42.86 35.37 Both chrIII 89 11224357 11224276 View Ser GCT taaggattgt tttttacgcc 0 0 46.13 30.54 15.59 Eufind chrIII 90 11167474 11167403 View Glu TTC ctctcgccgc gtttcttttt 0 0 79.04 54.46 24.58 Both chrIII 91 11016174 11016103 View Met CAT tcttctcgac gatctctttt 0 0 70.46 44.77 25.69 Both chrIII 92 11012194 11012124 View Pseudo ACC gatctcactg aaaccttttt 0 0 22.93 37.51 -14.58 Eufind chrIII 93 11002656 11002583 View Pseudo AAT cctctcaagt aacctttttt 0 0 20.79 41.54 -20.75 Eufind chrIII 94 10924064 10923993 View Thr TGT tttacggtgt tactcttttg 0 0 71.40 50.55 20.85 Eufind chrIII 95 10624076 10624004 View Pseudo TAT tgccacctgc ttttttttgc 0 0 50.06 50.89 -0.83 Eufind chrIII 96 10478249 10478176 View Pseudo TTT aaaaaaccaa cttttctttt 0 0 20.27 17.68 2.59 Eufind chrIII 97 10116615 10116543 View Arg ACG aagaaaatgt aaatctcttt 0 0 71.61 57.29 14.32 Both chrIII 98 10047716 10047643 View Pseudo CTT aaactcaatg tactcttttg 0 0 21.47 25.76 -4.29 Eufind chrIII 99 10034758 10034687 View Glu CTC cctcccacgc gatggttttt 0 0 63.38 47.34 16.04 Eufind chrIII 100 10003076 10003005 View Pseudo TTT ttgcttatgg acttgttttt 0 0 21.75 49.13 -27.38 Eufind chrIII 101 9173611 9173539 View Asn GTT ggaaatgtct aaaacttttt 0 0 73.73 50.90 22.83 Both chrIII 102 7911894 7911823 View Pseudo ??? agacgacaag tttcgttttt 0 0 22.49 33.73 -11.24 Eufind chrIII 103 7321006 7320888 View Leu CAA ccctaccacc gattcttttg 7320968 7320934 60.24 42.85 17.39 Both chrIII 104 6656290 6656172 View Leu CAA gtctttcgca ggaatttttg 6656252 6656218 47.62 38.32 9.30 Both chrIII 105 6237756 6237685 View Gly TCC gaaaccatcc gaattccttt 0 0 73.31 46.98 26.33 Both chrIII 106 6231747 6231676 View Gly TCC aatgatcagt agttcctttt 0 0 34.33 28.93 5.40 Both chrIII 107 6108628 6108556 View Asn GTT tctctttcgt aaatcttttg 0 0 73.73 50.90 22.83 Both chrIII 108 5708018 5707937 View Ser AGA tctctcgcct ttaacacttt 0 0 80.44 48.88 31.56 Both chrIII 109 4211509 4211426 View Pro GGG acaacttgtc aagttttttt 0 0 32.83 16.38 16.45 Both chrIII 110 3899746 3899674 View Phe GAA gataaaccgt atctccattt 0 0 81.50 57.90 23.60 Both chrIII 111 3672533 3672461 View Val AAC atctatcggt gtcccaagtt 0 0 77.11 49.53 27.58 Both chrIII 112 2713596 2713511 View Undet ??? cagaatatct agataccttt 0 0 45.10 19.37 25.73 Both chrIII 113 2709245 2709175 View Gly GCC gagaaaatgc attccttttt 0 0 78.62 62.98 15.64 Both chrIII 114 2650558 2650488 View Gly GCC cttccttgtc attctttttt 0 0 78.62 62.98 15.64 Both chrIII 115 2640256 2640175 View Leu AAG gtttctcgtc gttctttttt 0 0 65.79 35.99 29.80 Both chrIII 116 2634704 2634623 View Leu AAG gtttctcgtc gttctttttt 0 0 65.79 35.99 29.80 Both chrIII 117 2520691 2520610 View Leu AAG gtttctcgtc gttctttttt 0 0 65.79 35.99 29.80 Both chrIII 118 2491281 2491209 View Pseudo GAC ctcacaatgc gtttcttttt 0 0 27.67 37.31 -9.64 Eufind chrIII 119 1838636 1838563 View Ile AAT ctccttccgt aactcttttt 0 0 85.74 64.62 21.12 Both chrIII 120 1766014 1765943 View Met CAT tcttcctatc gaaccttttt 0 0 70.46 44.77 25.69 Both chrIII 121 1736206 1736135 View Met CAT ttctcctatc gaaccttttt 0 0 70.46 44.77 25.69 Both chrIII 122 1700593 1700521 View Pseudo AGT gtcgcctctt cacttttttc 0 0 20.52 28.62 -8.10 Eufind chrIII 123 1612231 1612158 View Pseudo TTC gccagacagt actctttttg 0 0 20.79 29.15 -8.36 Eufind chrIII 124 1540802 1540730 View Lys CTT cttcaatgcc tactcttttg 0 0 80.31 62.84 17.47 Both chrIII 125 1433076 1433005 View Gln TTG ctcctcgtgc atcgtttttt 0 0 74.78 50.13 24.65 Both chrIII 126 1353202 1353131 View Thr TGT tccctcgtgc acttcttttg 0 0 78.78 55.79 22.99 Both chrIII 127 1324588 1324507 View Ser AGA tctccaccgt ttaacctttt 0 0 80.44 48.88 31.56 Both chrIII 128 1319460 1319379 View Ser TGA cttctcctgt ttaacctttt 0 0 80.82 49.52 31.30 Both chrIII 129 1297913 1297842 View Thr TGT cctctcgtgc acttcttttg 0 0 78.78 55.79 22.99 Both chrIII 130 952710 952640 View Pseudo TCC cctaactgtg aactcttttt 0 0 20.56 22.19 -1.63 Eufind chrIII 131 932910 932839 View Thr CGT gtttccgtgt attgcgtttt 0 0 75.77 56.54 19.23 Both chrIII 132 931818 931747 View Glu CTC cctctcacgc taagtttttt 0 0 80.86 53.32 27.54 Both chrIII 133 923746 923675 View Glu CTC ccctccacgc gaagcttttt 0 0 80.86 53.32 27.54 Both chrIII 134 922832 922761 View Glu CTC tcctccacgc gaagcttttt 0 0 80.86 53.32 27.54 Both chrIII 135 919324 919253 View Glu CTC tcctccacgc gaagcttttt 0 0 80.86 53.32 27.54 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrIII_random 1 265753 265836 View Tyr GTA gaccgacgtg tttctttttg 265790 265800 76.75 50.12 26.63 Both chrIII_random 2 378770 378842 View Val AAC ctactccagt gtttcgtttt 0 0 77.11 49.53 27.58 Both chrIII_random 3 790797 790880 View Tyr GTA tcccggtgtt tttctttttg 790834 790844 76.75 50.12 26.63 Both chrIII_random 4 796090 796173 View Tyr GTA tcccggtgtg tttctttttg 796127 796137 76.75 50.12 26.63 Both chrIII_random 5 384969 384897 View Pseudo ??? ttttcatagt ttcttttttt 0 0 33.22 36.10 -2.88 Eufind chrIII_random 6 266652 266580 View Asn GTT tccttcggtt aaactttttt 0 0 73.73 50.90 22.83 Both chrIII_random 7 18966 18894 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind   chrIV 1 19531 19603 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.90 29.00 -8.10 Eufind chrIV 2 685436 685507 View Gly TCC tctcttggct ttatctcttt 0 0 73.31 46.98 26.33 Both chrIV 3 686366 686437 View Gly TCC cccgccatgc taagtgtttt 0 0 73.31 46.98 26.33 Both chrIV 4 711560 711643 View Tyr GTA cccttgcgtg tgtctttttt 711597 711607 76.75 50.12 26.63 Both chrIV 5 1217995 1218067 View Val AAC cacctccggt gtatcttttt 0 0 77.11 49.53 27.58 Both chrIV 6 1240456 1240527 View His GTG tacacttccg tttgtttttg 0 0 74.47 48.59 25.88 Both chrIV 7 1243006 1243078 View Val AAC cccttccggt gattcttttt 0 0 77.11 49.53 27.58 Both chrIV 8 1243848 1243919 View His GTG tacactttcg ttcccttttg 0 0 74.47 48.59 25.88 Both chrIV 9 1269009 1269080 View Asp GTC ctctttcgtg aaatcttttt 0 0 66.04 41.34 24.70 Both chrIV 10 1272140 1272211 View Asp GTC ctctcccgtg aatctttttt 0 0 66.04 41.34 24.70 Both chrIV 11 1420979 1421050 View Asp GTC agctcccgtg aaatcttttt 0 0 54.97 33.49 21.48 Both chrIV 12 1467568 1467639 View His GTG cacactttcg actccttttt 0 0 74.34 48.35 25.99 Both chrIV 13 1471341 1471412 View Ala AGC tctcctcgtg gaatcttttt 0 0 62.44 36.59 25.85 Both chrIV 14 1472403 1472474 View Ala AGC ctcctcgttc gaaccttttt 0 0 69.87 40.11 29.76 Both chrIV 15 1473472 1473543 View Ala AGC tcccatgtgc gaaccttttt 0 0 69.87 40.11 29.76 Both chrIV 16 1474390 1474462 View Val AAC ccttttcggt gtctcttttt 0 0 77.11 49.53 27.58 Both chrIV 17 1475306 1475377 View His GTG cgcattctcg actccttttt 0 0 74.34 48.35 25.99 Both chrIV 18 1619471 1619544 View Pseudo TTT ccacagggtt atttcttttt 0 0 30.79 38.39 -7.60 Eufind chrIV 19 1811622 1811694 View Pseudo TTC acccacctct cattactttt 0 0 34.71 51.66 -16.95 Eufind chrIV 20 2865309 2865381 View Val AAC caccaccggt gtttcctttt 0 0 77.11 49.53 27.58 Both chrIV 21 2868215 2868287 View Val AAC ctctaccggt gttccttttt 0 0 77.11 49.53 27.58 Both chrIV 22 2872307 2872379 View Val AAC ctctaccggt gtttcttttt 0 0 77.11 49.53 27.58 Both chrIV 23 2930748 2930819 View His GTG ttctctttcg tttctttttt 0 0 74.47 48.59 25.88 Both chrIV 24 3090031 3090103 View Val AAC ttctctcggt ggtccttttt 0 0 77.11 49.53 27.58 Both chrIV 25 3090794 3090866 View Val AAC tttaatcggt gttccttttt 0 0 77.11 49.53 27.58 Both chrIV 26 3406280 3406351 View Pro CGG aatcaccagt aaactttttt 0 0 75.76 55.52 20.24 Both chrIV 27 4998427 4998549 View Leu CAA acccactcac taacttttta 4998465 4998503 59.61 42.21 17.40 Both chrIV 28 5832721 5832839 View Leu CAA aagttttcgt aatatttttt 5832759 5832793 61.65 44.26 17.39 Both chrIV 29 6187634 6187705 View Trp CCA tagttctcgt aatctttttg 0 0 71.83 47.21 24.62 Both chrIV 30 6261743 6261814 View Glu CTC tctccaatca gatcattttt 0 0 80.86 53.32 27.54 Both chrIV 31 8404072 8404155 View Arg CCG ggattttgtt gaaacctctt 0 0 24.61 17.02 7.59 Eufind chrIV 32 8789709 8789780 View Trp CCA ttcaaaacgt aacgtttttc 0 0 71.83 47.21 24.62 Both chrIV 33 9152957 9153029 View Arg TCG ggtcaaatgt aaatcttttt 0 0 71.44 55.38 16.06 Both chrIV 34 9158122 9158194 View Arg TCG ggtcaaatgt aaatcttttt 0 0 71.44 55.38 16.06 Both chrIV 35 9159410 9159482 View Arg TCG ggtttaatgt aaatctttat 0 0 69.17 52.42 16.75 Both chrIV 36 9162207 9162279 View Arg TCG ggtgaaacgt aaatcttttt 0 0 59.54 45.77 13.77 Both chrIV 37 10973703 10973774 View Asp GTC tttttccgtg aaaccttttt 0 0 66.04 41.34 24.70 Both chrIV 38 11388520 11388592 View Lys TTT ctccctcggg tgactttttg 0 0 77.10 61.67 15.43 Both chrIV 39 11715409 11715480 View Asp GTC ttcactcgtg aattttttaa 0 0 66.04 41.34 24.70 Both chrIV 40 11751606 11751678 View Lys CTT gtccttcgcc tatgtttttt 0 0 80.31 62.84 17.47 Both chrIV 41 11755481 11755553 View Lys CTT gtctcccgcc tatgtttttt 0 0 80.31 62.84 17.47 Both chrIV 42 11757657 11757729 View Lys CTT gtctctcgcc tatgtttttt 0 0 80.31 62.84 17.47 Both chrIV 43 11758560 11758632 View Lys CTT gtctctcgcc tatgtttttt 0 0 80.31 62.84 17.47 Both chrIV 44 11762850 11762922 View Lys CTT gtagctcgcc tatctttttt 0 0 80.31 62.84 17.47 Both chrIV 45 11983182 11983254 View Lys TTT gtgcgctgtg tgactttttt 0 0 77.10 61.67 15.43 Both chrIV 46 12578621 12578692 View Ala AGC ttcgtcgtgc gattcttttt 0 0 62.44 36.29 26.15 Both chrIV 47 12585291 12585362 View Ala AGC tacaccgtgc gaattgtttt 0 0 69.87 40.11 29.76 Both chrIV 48 12602144 12602215 View Ala AGC tacgacgtgc gaatcttttc 0 0 69.87 40.11 29.76 Both chrIV 49 12682205 12682276 View Glu TTC tctctcgttc gtttcttttt 0 0 79.04 54.46 24.58 Both chrIV 50 12695256 12695327 View Glu TTC cctcttgtcc gtttcttttt 0 0 79.04 54.46 24.58 Both chrIV 51 12854875 12854945 View Pseudo TTT cttttgtgtt acttcttttt 0 0 22.68 37.62 -14.94 Eufind chrIV 52 13274233 13274304 View Ala TGC acgagagtgt gttacctttt 0 0 72.66 45.20 27.46 Both chrIV 53 13280859 13280930 View Ala TGC acgagagtgt gttacctttt 0 0 72.66 45.20 27.46 Both chrIV 54 13334969 13335040 View Thr CGT aactaacgtc ttttttggtt 0 0 73.09 53.86 19.23 Both chrIV 55 13378613 13378684 View Ala TGC gaagagggtg gattcgtttt 0 0 72.66 45.20 27.46 Both chrIV 56 13485197 13485275 View Tyr GTA ctcccgtgcc tctttttttc 13485232 13485242 41.81 27.02 14.79 Eufind chrIV 57 13910793 13910864 View Glu TTC cctctcgtcc gtttcttttt 0 0 79.04 54.46 24.58 Both chrIV 58 13939595 13939666 View Asp GTC tcttctcgtg aaaccttttt 0 0 66.04 41.34 24.70 Both chrIV 59 14054812 14054886 View Pseudo ATG gtggaaaatt ttattttttt 0 0 24.96 37.61 -12.65 Eufind chrIV 60 14058534 14058606 View Pseudo ACC aacctcagtg actgtagcca 0 0 33.20 41.01 -7.81 Eufind chrIV 61 14083626 14083698 View Pseudo TTA aaggcgccgc ttctcttttt 0 0 21.83 54.37 -32.54 Eufind chrIV 62 14084521 14084592 View Pseudo TTG atagcgccgc atttactttt 0 0 47.68 54.65 -6.97 Eufind chrIV 63 14175796 14175867 View Asp GTC ttttctcgtg aaaccttttt 0 0 63.44 38.75 24.69 Both chrIV 64 14178309 14178380 View Asp GTC ttttctcgtg aaccattttt 0 0 59.50 39.75 19.75 Both chrIV 65 14180550 14180621 View Asp GTC ttcgctcgtg aatccttttt 0 0 66.04 41.34 24.70 Both chrIV 66 14186398 14186469 View Asp GTC ttctctcgtg aaaccctttt 0 0 66.04 41.34 24.70 Both chrIV 67 14188114 14188185 View Asp GTC ttctcccgtg aatccttttt 0 0 66.04 41.34 24.70 Both chrIV 68 14189551 14189622 View Asp GTC ttaccttgtg aaaccttttt 0 0 66.04 41.34 24.70 Both chrIV 69 14195198 14195269 View Asp GTC ttttctcgtg aaacctttta 0 0 66.04 41.34 24.70 Both chrIV 70 14196285 14196356 View Met CAT tcctcttgtg gaactctttt 0 0 70.46 44.77 25.69 Both chrIV 71 14197865 14197936 View Met CAT tcctgctgta gaactctatt 0 0 70.46 44.77 25.69 Both chrIV 72 14572458 14572531 View Pseudo ATC tgagggcacc tttttctttt 0 0 24.27 30.51 -6.24 Eufind chrIV 73 14574331 14574401 View Pseudo TCC tcaccaaggt attatgtttt 0 0 24.00 37.39 -13.39 Eufind chrIV 74 14853117 14853188 View Asp GTC tcctctcgtg aaacattttt 0 0 66.04 41.34 24.70 Both chrIV 75 15127681 15127753 View Arg TCT ccatattcat aatctttttg 0 0 72.93 58.95 13.98 Both chrIV 76 14570048 14569977 View Asp GTC caggaatgtg aaatcctttt 0 0 66.04 41.34 24.70 Both chrIV 77 14258210 14258139 View Glu TTC tgcctcgtcc gtttcctttt 0 0 79.04 54.46 24.58 Both chrIV 78 14197763 14197693 View Pseudo TTG gcgagattgt aaatgtcttt 0 0 27.84 34.67 -6.83 Eufind chrIV 79 14165745 14165673 View Pseudo GTG agtttacagt aaccttttta 0 0 27.22 49.86 -22.64 Eufind chrIV 80 14084428 14084356 View Pseudo TTG agagcctggt tttcactttt 0 0 33.71 42.82 -9.11 Eufind chrIV 81 14083523 14083452 View Pseudo TTG tcctctctgc ttttcttttt 0 0 37.49 53.02 -15.53 Eufind chrIV 82 14054714 14054644 View Pseudo ATC tcctccatct tttttctttt 0 0 26.71 42.30 -15.59 Eufind chrIV 83 13764199 13764130 View Pseudo TTG cccacaatgt tcaaaccttt 0 0 26.59 40.05 -13.46 Eufind chrIV 84 13761497 13761425 View Pseudo TTG tctctaaagt aattcttttt 0 0 22.07 58.00 -35.93 Eufind chrIV 85 13482838 13482760 View Tyr GTA ctcccgtgcc tctttttttc 13482803 13482793 41.81 27.02 14.79 Eufind chrIV 86 13455357 13455286 View Ala TGC gaaagggtgt gattactttt 0 0 72.66 45.20 27.46 Both chrIV 87 13359534 13359463 View Ala TGC cagagggtgt catttttact 0 0 72.66 45.20 27.46 Both chrIV 88 13355498 13355427 View Ala TGC cagagggtgt gatttttact 0 0 72.66 45.20 27.46 Both chrIV 89 13289035 13288964 View Ala TGC gagagggtgt gattactttt 0 0 72.66 45.20 27.46 Both chrIV 90 13124495 13124424 View Trp CCA ccgctttcgt aagtcttttt 0 0 71.83 47.21 24.62 Both chrIV 91 13117404 13117333 View Trp CCA accttagtgt aagacttttt 0 0 71.83 47.21 24.62 Both chrIV 92 12993267 12993182 View Leu CAA cagaatatcc agatactttt 0 0 48.33 27.34 20.99 Both chrIV 93 12699672 12699601 View Glu TTC tccctcgtcc gtttcttttt 0 0 79.04 54.46 24.58 Both chrIV 94 12557369 12557299 View Ala AGC ttcaccgtgc gaatcctttt 0 0 58.52 33.93 24.59 Eufind chrIV 95 12494185 12494114 View Pseudo ATC aggcggaaag attcgttttt 0 0 22.59 27.24 -4.65 Eufind chrIV 96 12069551 12069479 View Arg TCT tagtaaacgt aatctttttt 0 0 72.93 58.95 13.98 Both chrIV 97 11975861 11975789 View Lys TTT cactcccgat tgactgtttt 0 0 77.10 61.67 15.43 Both chrIV 98 11766607 11766535 View Lys CTT gtctgtcgcc tatctttttt 0 0 80.31 62.84 17.47 Both chrIV 99 11759800 11759728 View Lys CTT gtctctcgcc tatatttttt 0 0 80.31 62.84 17.47 Both chrIV 100 10977794 10977723 View Asp GTC ttttcccgtg aaattttttt 0 0 66.04 41.34 24.70 Both chrIV 101 10223634 10223563 View Met CAT gcctccagaa tatttttttt 0 0 70.46 44.77 25.69 Both chrIV 102 10170917 10170845 View Arg CCT cttcccttgt aaatcttttg 0 0 69.17 50.75 18.42 Both chrIV 103 9354299 9354216 View Leu CAG ttacaaacgt aactcttttt 0 0 70.54 37.70 32.84 Both chrIV 104 8801745 8801674 View Gln CTG ctctcccgtc atgtcttttt 0 0 74.41 51.47 22.94 Both chrIV 105 8532677 8532594 View Leu CAG tgtcaaacaa aattcttttg 0 0 71.68 39.97 31.71 Both chrIV 106 7455376 7455305 View Gln TTG ttgaaatgtc atgccttttt 0 0 74.78 50.13 24.65 Both chrIV 107 7455078 7455007 View Gln CTG ggtttccgtt atgctttttt 0 0 74.41 51.47 22.94 Both chrIV 108 6991727 6991655 View Val AAC tagactgtgc aattgccttt 0 0 45.72 29.85 15.87 Eufind chrIV 109 6981505 6981433 View Val TAC tttcccgacg agctttttgt 0 0 81.33 56.03 25.30 Both chrIV 110 6910450 6910367 View Leu CAG tgtaaagcaa aacccttttg 0 0 71.68 39.97 31.71 Both chrIV 111 6900961 6900890 View Ala AGC ttcatagtga gaaacttttt 0 0 69.87 40.11 29.76 Both chrIV 112 6362712 6362640 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrIV 113 6275244 6275174 View Gly GCC catccaataa ccactaaagt 0 0 78.62 62.98 15.64 Both chrIV 114 6260946 6260875 View Gln TTG ccgatacatc atcgttttgt 0 0 74.78 50.13 24.65 Both chrIV 115 4092778 4092707 View Cys GCA atggtggtgc atttcttttt 0 0 71.06 51.98 19.08 Both chrIV 116 3812746 3812665 View Leu AAG tctagcatgt gttccctttt 0 0 65.79 35.99 29.80 Both chrIV 117 3437080 3437008 View Arg ACG tctcttgtgt aaagcttttt 0 0 71.61 57.29 14.32 Both chrIV 118 3164721 3164652 View Pseudo TTT atcagaaatt caacttcttt 0 0 20.10 28.64 -8.54 Eufind chrIV 119 3156465 3156392 View Ile AAT tctcccgtcg aattttaaaa 0 0 85.74 64.62 21.12 Both chrIV 120 2751768 2751695 View Ile AAT cctcccatcg aattcttttt 0 0 85.74 64.62 21.12 Both chrIV 121 1563175 1563103 View Met CAT tctttcgcct atgttttttt 0 0 74.19 53.61 20.58 Both chrIV 122 1468473 1468402 View Ala AGC cttctcgtgc gaatattttt 0 0 69.87 40.11 29.76 Both chrIV 123 1467449 1467377 View Val AAC agttttcggt gtcgtttttt 0 0 77.11 49.53 27.58 Both chrIV 124 1462119 1462047 View Val AAC cgctcccggc attttttttg 0 0 65.90 44.01 21.89 Both chrIV 125 1289258 1289186 View Pseudo ACC tctcctccgt ttgcttttta 0 0 27.11 48.83 -21.72 Eufind chrIV 126 1243747 1243675 View Val AAC cctttctggt gtttacattt 0 0 77.11 49.53 27.58 Both chrIV 127 1240336 1240264 View Val AAC cacctccggt gtttcttttt 0 0 77.11 49.53 27.58 Both chrIV 128 1217398 1217327 View His GTG tacacttccg tttcgttttg 0 0 74.47 48.59 25.88 Both chrIV 129 1085699 1085628 View Gln TTG cactcccgtc atcgcttttt 0 0 74.78 50.13 24.65 Both chrIV 130 95903 95831 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrIV 131 3315 3244 View Asp GTC agctcccgtg aaatcttttt 0 0 54.97 33.49 21.48 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrIV_random 1 227248 227321 View Pseudo TTG ctgtaattgt agtctttttg 0 0 31.81 39.10 -7.29 Eufind chrIV_random 2 294799 294883 View Cys GCA cagaatatcc ggattacctt 0 0 32.69 15.71 16.98 Eufind   chrV 1 780107 780190 View Tyr GTA gggaaacgtt ttttttttcc 780144 780154 76.12 49.48 26.64 Both chrV 2 900746 900818 View Phe GAA tcctctcgtc accgtttttg 0 0 80.05 55.38 24.67 Both chrV 3 940418 940499 View Ser TGA tcaatctcgt aattcttttt 0 0 81.49 52.43 29.06 Both chrV 4 1093563 1093634 View Thr AGT tctcccgtcc ccgaactttt 0 0 85.45 60.72 24.73 Both chrV 5 1583176 1583257 View Leu AAG atattccggt gttccttttt 0 0 51.76 27.73 24.03 Both chrV 6 2443789 2443860 View Thr AGT cttctttgtc ccgatctttt 0 0 85.45 60.72 24.73 Both chrV 7 2658363 2658435 View Val TAC agttaccagc ctctttttta 0 0 78.68 56.38 22.30 Both chrV 8 2709893 2709965 View Met CAT tacctcgcct attctttttt 0 0 74.19 53.61 20.58 Both chrV 9 2825265 2825336 View Gly TCC aggaagacgt tatagttttt 0 0 75.39 49.07 26.32 Both chrV 10 3283251 3283322 View Asp GTC ctctcacgtg aaatcttttt 0 0 66.04 41.34 24.70 Both chrV 11 3290255 3290326 View Asp GTC ctctcacgtg aaattctttt 0 0 62.45 43.15 19.30 Both chrV 12 3293894 3293965 View Asp GTC ctctcgcgtg aaatcttttg 0 0 66.04 41.34 24.70 Both chrV 13 3720679 3720750 View Pseudo ATG gcaccattgc aattctcttt 0 0 22.74 36.55 -13.81 Eufind chrV 14 4356654 4356725 View Pro TGG agataaatgt nnnnnnngtg 0 0 73.62 51.59 22.03 Both chrV 15 4375559 4375627 View Pro TGG gaaacattgt atttcttttt 0 0 48.36 34.39 13.97 Eufind chrV 16 4377502 4377573 View Pro TGG gaaacattgt agttcttttt 0 0 77.13 55.19 21.94 Both chrV 17 4444818 4444890 View Pseudo AAT gtcgcctctt tacttttttc 0 0 22.38 29.85 -7.47 Eufind chrV 18 4498356 4498428 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrV 19 4521567 4521648 View Ser TGA atcaagccgt gatatgtttt 0 0 82.64 53.58 29.06 Both chrV 20 4714873 4714943 View Gly GCC tcaaaatgtc attccttttt 0 0 78.62 62.98 15.64 Both chrV 21 4791718 4791788 View Gly GCC tcaaaatgtc attccttttt 0 0 78.62 62.98 15.64 Both chrV 22 4800313 4800383 View Gly GCC acctgtggtc atactttttt 0 0 78.62 62.98 15.64 Both chrV 23 5520685 5520766 View Ser TGA ttgcggacgg aacttttttc 0 0 81.49 52.43 29.06 Both chrV 24 5552479 5552550 View Pro TGG aggaaaatgt attctttttt 0 0 77.13 55.19 21.94 Both chrV 25 5623857 5623929 View Val CAC aaaaacatgt agttttggag 0 0 83.58 58.28 25.30 Both chrV 26 5897317 5897388 View Gly TCC tcatttcaac gacttttaaa 0 0 73.31 46.98 26.33 Both chrV 27 6065631 6065703 View Asn GTT gtgaaaccgt aaaccttttt 0 0 49.17 34.27 14.90 Both chrV 28 6072173 6072245 View Asn GTT gagatatcgt aaatgttttg 0 0 73.73 50.90 22.83 Both chrV 29 6565255 6565327 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrV 30 7044577 7044649 View Val CAC aagaaacagc actttttgtt 0 0 79.28 56.97 22.31 Both chrV 31 7291836 7291919 View Leu CAG gttgaaatgt aacgtttttt 0 0 69.72 36.48 33.24 Both chrV 32 7303877 7303949 View Pseudo AGT gtcgcctcgt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrV 33 8525254 8525326 View Arg ACG gataaaatgt aaactttttt 0 0 63.68 49.37 14.31 Both chrV 34 8552507 8552578 View His GTG tacacttccg ttgttttttt 0 0 74.47 48.59 25.88 Both chrV 35 8583646 8583718 View Lys CTT tacaatcgcc gatgtttttt 0 0 80.31 62.84 17.47 Both chrV 36 9604025 9604096 View Cys GCA cttctttcgt agttattttt 0 0 71.06 51.98 19.08 Both chrV 37 9824562 9824633 View Cys GCA atgtcaatgt acttcttttt 0 0 71.06 51.98 19.08 Both chrV 38 10094120 10094191 View Thr AGT gatctcatct ccgagttttt 0 0 85.45 60.72 24.73 Both chrV 39 10108731 10108815 View Ile TAT aggggagtgt gatattttta 10108769 10108779 71.74 43.45 28.29 Both chrV 40 10778676 10778748 View Arg TCT gacgaaacgt aatgtttttg 0 0 74.35 60.37 13.98 Both chrV 41 10877988 10878059 View Ala CGC tcttcttgtc aatctctttt 0 0 68.91 39.15 29.76 Both chrV 42 11050213 11050284 View Ala CGC tttggtcggc aatttctttt 0 0 68.91 39.15 29.76 Both chrV 43 11213827 11213910 View Tyr GTA atgaaatgtc attgtttttg 11213864 11213874 76.75 50.12 26.63 Both chrV 44 12258947 12259018 View Gln CTG tgtccaccgc attgcgtttt 0 0 76.86 53.92 22.94 Both chrV 45 12515069 12515140 View Asp GTC tacaaatgtg aaaccttttt 0 0 66.04 41.34 24.70 Both chrV 46 12516977 12517048 View Asp GTC tagaagcgtg aattcttttt 0 0 66.04 41.34 24.70 Both chrV 47 12518578 12518650 View Val AAC tgttaccagc gtcttatttt 0 0 77.11 49.53 27.58 Both chrV 48 13054940 13055012 View Val AAC ttccaacagc ttctgctttt 0 0 73.67 44.83 28.84 Both chrV 49 13149273 13149344 View His GTG tgcactttcg ttgttttctt 0 0 74.47 48.59 25.88 Both chrV 50 13149726 13149797 View Thr CGT tctctccgtc ttttttgttt 0 0 75.77 56.54 19.23 Both chrV 51 13160993 13161065 View Val AAC ctcaaccagc gtcttatttt 0 0 77.11 49.53 27.58 Both chrV 52 13162068 13162139 View His GTG tgtactctcg ttgctttcgt 0 0 74.47 48.59 25.88 Both chrV 53 13179047 13179119 View Val AAC ctcaatcagc gtcttagttt 0 0 77.11 49.53 27.58 Both chrV 54 13427377 13427449 View Lys TTT ttgcatcgta agatattttt 0 0 74.54 59.10 15.44 Both chrV 55 13647520 13647591 View Gln CTG gtgtctcgtc atcgcttttg 0 0 78.75 55.80 22.95 Both chrV 56 13649969 13650040 View Gln TTG gggtaccacc atcgtttttt 0 0 74.78 50.13 24.65 Both chrV 57 13651839 13651910 View Gln TTG tctccaccgg atccgttttt 0 0 74.78 50.13 24.65 Both chrV 58 13653340 13653411 View Gln TTG ttattaccgg atcccttttt 0 0 74.78 50.13 24.65 Both chrV 59 13717669 13717741 View Asn GTT ttcctgttgt aaatcttttc 0 0 73.73 50.90 22.83 Both chrV 60 13843762 13843834 View Asn GTT tctctcgcct aaattttttt 0 0 73.73 50.90 22.83 Both chrV 61 14115458 14115530 View Asn GTT tgcgacctgt aaatcttttt 0 0 73.73 50.90 22.83 Both chrV 62 14387366 14387438 View Asn GTT tccgccatct aaatcttttt 0 0 73.73 50.90 22.83 Both chrV 63 14516540 14516612 View Pseudo TTC tttcctagtg aacctttttt 0 0 24.46 48.49 -24.03 Eufind chrV 64 14520967 14521038 View Pseudo GTC ttatgatggg ttttcttttt 0 0 24.00 21.83 2.17 Eufind chrV 65 14521808 14521875 View Pseudo TTC cccttcgtgg gttttttagt 0 0 23.00 9.78 13.22 Eufind chrV 66 14523275 14523347 View Pseudo ATC cttttccttg atctcgttat 0 0 25.77 34.56 -8.79 Eufind chrV 67 14544594 14544666 View Val CAC tccttcgaat acttcctttt 0 0 83.58 58.28 25.30 Both chrV 68 14569313 14569384 View Pseudo ATG actcctcatg aatccttttt 0 0 30.42 28.96 1.46 Eufind chrV 69 14590609 14590680 View His GTG gtctctctcg actctttttt 0 0 74.34 48.35 25.99 Both chrV 70 14648291 14648362 View Pseudo TTG atgccccctt aactcttttt 0 0 22.56 48.60 -26.04 Eufind chrV 71 14654329 14654401 View Pseudo ATG acctctccat aatccttttt 0 0 29.96 49.52 -19.56 Eufind chrV 72 14655976 14656048 View Pseudo ATG ccgctctgat aagtcttttt 0 0 30.68 40.51 -9.83 Eufind chrV 73 14691172 14691244 View Asn GTT tgcctcgcct aaatttttgt 0 0 73.73 50.90 22.83 Both chrV 74 15626456 15626385 View Cys GCA atttccaagc agtttctttt 0 0 71.06 51.98 19.08 Both chrV 75 15626262 15626191 View Cys GCA tctctcatgt agttcttttt 0 0 71.06 51.98 19.08 Both chrV 76 15062491 15062410 View Leu AAG ctcttccggc gttctttttt 0 0 67.88 38.08 29.80 Both chrV 77 14655872 14655801 View Pseudo ATG actgtccatg aagtcttttt 0 0 23.38 30.68 -7.30 Eufind chrV 78 14654226 14654154 View Pseudo ATG gactcctcat aatgtttttt 0 0 28.45 38.63 -10.18 Eufind chrV 79 14648182 14648114 View Gln TTG ctcagtgtgc aagtcttttt 0 0 23.57 12.33 11.24 Eufind chrV 80 14587446 14587375 View Asp GTC ccctctcgtg aaactttttt 0 0 66.04 41.34 24.70 Both chrV 81 14569209 14569137 View Pseudo ATA gcctctccat aatccttttt 0 0 25.82 50.13 -24.31 Eufind chrV 82 14567613 14567542 View Pseudo ATG gactcccttt gatctctttt 0 0 22.94 41.36 -18.42 Eufind chrV 83 14566785 14566716 View Pseudo ATG gcgctccacc caaacctttt 0 0 23.28 35.80 -12.52 Eufind chrV 84 14560847 14560778 View Pseudo TTG gcgctccgcc taatattttt 0 0 28.60 38.40 -9.80 Eufind chrV 85 14539916 14539844 View Val CAC ttcctcgtgt acttcctttt 0 0 83.58 58.28 25.30 Both chrV 86 14524092 14524022 View Pseudo AAG gatgagtgtg aaacatcttt 0 0 21.49 28.08 -6.59 Eufind chrV 87 14522329 14522259 View Gly GCC ttctctcgtg attctttttt 0 0 78.62 62.98 15.64 Both chrV 88 14506193 14506123 View Gly GCC atgtctcgtg attctttttt 0 0 78.62 62.98 15.64 Both chrV 89 14401519 14401447 View Asn GTT tccgccatct aaattgtttt 0 0 73.73 50.90 22.83 Both chrV 90 14391356 14391284 View Asn GTT tccgccatct aaactttttt 0 0 73.73 50.90 22.83 Both chrV 91 14153286 14153214 View Asn GTT tgcgacctgt aaatcttttt 0 0 73.73 50.90 22.83 Both chrV 92 13974833 13974761 View Asn GTT cttcccgtgt aaactttttt 0 0 73.73 50.90 22.83 Both chrV 93 13966501 13966429 View Asn GTT ggcttgccgt aaactttttt 0 0 73.73 50.90 22.83 Both chrV 94 13965172 13965103 View Asn GTT ggcagtcccc aacttttttt 0 0 28.97 17.65 11.32 Eufind chrV 95 13857878 13857795 View Tyr GTA gtcctccgtg tttctttttt 13857841 13857831 76.75 50.12 26.63 Both chrV 96 13805183 13805111 View Arg TCG tagtaaacgt aaatcttttt 0 0 67.47 53.70 13.77 Both chrV 97 13675222 13675151 View Gln TTG cctcgccgtc atcgcttttt 0 0 74.78 50.13 24.65 Both chrV 98 13662048 13661977 View Gln TTG cctcgccgtc atctcttttt 0 0 68.25 49.04 19.21 Both chrV 99 13647417 13647346 View Gln TTG tcaggtggtt atcgtttttt 0 0 74.78 50.13 24.65 Both chrV 100 13644641 13644570 View Gln TTG atctctcacc attgtttctc 0 0 74.78 50.13 24.65 Both chrV 101 13394329 13394258 View Asp GTC tccaattgtg aaatcttttt 0 0 49.48 33.31 16.17 Eufind chrV 102 13381200 13381128 View Met CAT ctctttcggt agtttttttg 0 0 74.19 53.61 20.58 Both chrV 103 13182010 13181939 View His GTG tgcactttcg ttgttttctt 0 0 74.47 48.59 25.88 Both chrV 104 13181547 13181476 View Thr CGT tctccccgtc ttttttgttt 0 0 75.77 56.54 19.23 Both chrV 105 13177922 13177854 View His GTG cgcgcccagg ttgctttcgt 0 0 44.66 29.57 15.09 Eufind chrV 106 13161975 13161903 View Val AAC ctcaaacaga gtcttagttt 0 0 74.43 46.85 27.58 Both chrV 107 13160884 13160813 View His GTG ttcactctcg ttgctttcgt 0 0 74.47 48.59 25.88 Both chrV 108 13153327 13153256 View Pseudo ATC gacaagcccc tttcgttttt 0 0 23.16 30.82 -7.66 Eufind chrV 109 13149177 13149105 View Val AAC ttccaacagc ttctgctttt 0 0 73.67 44.83 28.84 Both chrV 110 13054844 13054773 View His GTG tgcactttcg ttgttttctt 0 0 74.47 48.59 25.88 Both chrV 111 13054391 13054320 View Thr CGT tctctccgtc ttttttgttt 0 0 75.77 56.54 19.23 Both chrV 112 12544807 12544736 View Gln CTG gtctctcgtc atcgcttttt 0 0 76.86 53.92 22.94 Both chrV 113 12518470 12518399 View His GTG tacaatttcg tttgtttttg 0 0 74.47 48.59 25.88 Both chrV 114 11952969 11952886 View Tyr GTA atctaacgtg tttctttttt 11952932 11952922 76.75 50.12 26.63 Both chrV 115 11902636 11902564 View Phe GAA gagtgtgtcg atcctttttt 0 0 80.50 56.53 23.97 Both chrV 116 11887070 11886999 View Cys GCA gtccacatgt agttcttttt 0 0 71.06 51.98 19.08 Both chrV 117 11154291 11154220 View Ala CGC agaaatcagc aatctctttt 0 0 70.65 40.89 29.76 Both chrV 118 10972487 10972404 View Tyr GTA gtctcccgtg tttcttttta 10972450 10972440 76.75 50.12 26.63 Both chrV 119 10968632 10968561 View Thr AGT tttcccgtgc ccgagatttt 0 0 85.45 60.72 24.73 Both chrV 120 10778206 10778135 View Asp GTC ttacatcgtg aatctttttc 0 0 66.04 41.34 24.70 Both chrV 121 10206416 10206345 View Glu TTC actttcgtcc gtttattttt 0 0 79.04 54.46 24.58 Both chrV 122 9818254 9818173 View Ser GCT cttctttcgt aatttctttt 0 0 81.69 49.76 31.93 Both chrV 123 8522308 8522236 View Arg ACG gaagaaatgt aaaatttttg 0 0 71.61 57.29 14.32 Both chrV 124 8044938 8044866 View Arg CCT gcaaaaccgt aatgtttttt 0 0 69.17 50.75 18.42 Both chrV 125 7237325 7237241 View Tyr GTA gttttccgtg attctttttt 7237288 7237277 76.75 50.11 26.64 Both chrV 126 6423967 6423883 View Ile TAT tttcgggcgt gatttctttt 6423929 6423919 74.59 46.29 28.30 Both chrV 127 5468018 5467947 View Thr AGT ctcttccgca ccgaaacttt 0 0 85.45 60.72 24.73 Both chrV 128 5462647 5462576 View Thr AGT ctcttccgca ccgaaatttt 0 0 85.45 60.72 24.73 Both chrV 129 5196873 5196792 View Leu TAG tttctttcgt atttcttttt 0 0 71.00 41.72 29.28 Both chrV 130 5006154 5006073 View Ser GCT tttcaaacgt aaattctttt 0 0 81.69 49.76 31.93 Both chrV 131 4382180 4382109 View Pro TGG acaggtttgt attcattttt 0 0 70.91 54.48 16.43 Both chrV 132 4377156 4377085 View Pro TGG gagacgttgt atttgttttt 0 0 77.13 55.19 21.94 Both chrV 133 4375399 4375328 View Pro TGG aaataaacgt atttcttttt 0 0 77.13 55.19 21.94 Both chrV 134 4364075 4364004 View Pro TGG gaagaattgt attccttttt 0 0 77.13 55.19 21.94 Both chrV 135 4356544 4356473 View Pro TGG gaaacactgt attccttttt 0 0 77.13 55.19 21.94 Both chrV 136 3499621 3499549 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrV 137 3350362 3350290 View Pseudo TTG tttcctcgct aaattttttg 0 0 25.91 31.70 -5.79 Eufind chrV 138 2926337 2926266 View Pseudo TGG tttattgtgt atttcttttt 0 0 50.37 49.26 1.11 Eufind chrV 139 2792151 2792080 View Gly TCC agagacgtgc ggtttctttt 0 0 73.31 46.98 26.33 Both chrV 140 2717642 2717570 View Met CAT tccctcgcct atctttttta 0 0 74.19 53.61 20.58 Both chrV 141 2505595 2505524 View Thr AGT cttctttgtc ccgatctttt 0 0 85.45 60.72 24.73 Both chrV 142 1580999 1580918 View Leu AAG gaatgtcggc gtttcttttt 0 0 61.94 33.15 28.79 Both chrV 143 1514046 1513974 View Arg TCT caacattcgt aatctttttt 0 0 72.93 58.95 13.98 Both chrV 144 1512342 1512273 View Pseudo TCT agaacaatca aatttttaaa 0 0 38.22 39.23 -1.01 Eufind chrV 145 1341688 1341614 View Asp GTC ctcggtagta tctttttttt 0 0 28.12 12.14 15.98 Eufind chrV 146 1339569 1339497 View Lys TTT ccactccgga tgactttttt 0 0 77.10 61.67 15.43 Both chrV 147 1164397 1164325 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrV 148 1053768 1053696 View Arg ACG cgcaaaatgt aaactctttt 0 0 71.61 57.29 14.32 Both chrV 149 947063 946980 View Tyr GTA ggttgccgtg tttctttttt 947026 947016 76.75 50.12 26.63 Both chrV 150 847843 847772 View Gln CTG gtgcgctgtc atcgcttttt 0 0 76.86 53.92 22.94 Both chrV 151 759489 759408 View Leu TAG cctctctcgg atttcttttt 0 0 71.00 41.72 29.28 Both chrV 152 753133 753061 View Met CAT tcgttcccgt atcctttttt 0 0 74.19 53.61 20.58 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrV_random 1 1099358 1099431 View Ala AGC tgcgcgccca gaactttttt 0 0 48.91 32.55 16.36 Eufind chrV_random 2 1434984 1435055 View Thr AGT tttgatgagc cagaactttt 0 0 85.45 60.72 24.73 Both chrV_random 3 1564851 1564923 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrV_random 4 1625584 1625655 View Pro TGG atgaatttgt attcttttta 0 0 77.13 55.19 21.94 Both chrV_random 5 1879065 1879136 View Gln TTG ttcgaaatgt atgctttttg 0 0 74.78 50.13 24.65 Both chrV_random 6 2249275 2249345 View Pseudo AGT gtcgcctctt tttacttttt 0 0 21.32 31.72 -10.40 Eufind chrV_random 7 2446068 2446140 View Phe GAA ctcctcgtat attgtttttg 0 0 80.05 55.38 24.67 Both chrV_random 8 2430095 2430024 View Glu TTC tctctcgtcc gtttctattt 0 0 79.04 54.46 24.58 Both chrV_random 9 784366 784294 View Val AAC tactttcggt ggtcctcttt 0 0 69.74 43.30 26.44 Eufind chrV_random 10 157406 157335 View Thr CGT gtccccctct tttgtttttc 0 0 63.88 53.33 10.55 Eufind   chrX 1 473675 473747 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrX 2 891449 891521 View Val AAC ctctctcacc gatgtttttt 0 0 72.74 41.90 30.84 Both chrX 3 1224539 1224610 View Pro CGG tgaactcagt aaactttttt 0 0 74.15 53.91 20.24 Both chrX 4 1678038 1678110 View Lys CTT tggtatcgcc tatctttttt 0 0 80.31 62.84 17.47 Both chrX 5 1819934 1820005 View Ala AGC ataagcgtgc gaaatctttt 0 0 69.87 40.11 29.76 Both chrX 6 1820343 1820414 View Ala AGC atagtcgtgc gaattgtttt 0 0 69.87 40.11 29.76 Both chrX 7 1822233 1822304 View Ala AGC atagtcgtgc gaaacttttt 0 0 69.87 40.11 29.76 Both chrX 8 1969515 1969587 View Pseudo AGT gtcgcctctt tacttttttc 0 0 24.82 32.91 -8.09 Eufind chrX 9 2574792 2574863 View Pseudo GCC accgatttac aacctttttt 0 0 20.72 31.43 -10.71 Eufind chrX 10 2575808 2575880 View Pseudo AGT atcgactttc aacctttttg 0 0 23.99 37.10 -13.11 Eufind chrX 11 2600365 2600436 View Ala TGC ctagttgtgc gaaaactttt 0 0 72.66 45.20 27.46 Both chrX 12 2600577 2600648 View Ala AGC atagacgtgc gaaacttttt 0 0 69.87 40.11 29.76 Both chrX 13 3768132 3768204 View Arg ACG ttctccagct aaatcttttt 0 0 71.61 57.29 14.32 Both chrX 14 4310837 4310909 View Asn GTT tcactcgtgt aaatcttttt 0 0 73.73 50.90 22.83 Both chrX 15 5230776 5230848 View Glu CTC gtattcatca gatttatttt 0 0 54.01 38.30 15.71 Eufind chrX 16 5231056 5231127 View Glu CTC caaatccatc tatctttttt 0 0 80.86 53.32 27.54 Both chrX 17 5430495 5430567 View Arg ACG ttgtgtctgt aaatcttttt 0 0 71.61 57.29 14.32 Both chrX 18 5950644 5950715 View Gly TCC agtttgtggc gatttttatt 0 0 73.31 46.98 26.33 Both chrX 19 6147140 6147211 View Glu TTC acactcgcca gttctttttt 0 0 79.04 54.46 24.58 Both chrX 20 6315395 6315467 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrX 21 7676057 7676128 View Asp GTC tgctaatgtg aaatcttttt 0 0 66.04 41.34 24.70 Both chrX 22 7915041 7915112 View Gly TCC gttaatgtgt gtaatctttt 0 0 73.31 46.98 26.33 Both chrX 23 8089232 8089303 View His GTG ttctctttcg acttttttct 0 0 74.47 48.59 25.88 Both chrX 24 8688089 8688161 View Met CAT ctctctcagc agcttttttg 0 0 74.19 53.61 20.58 Both chrX 25 8936470 8936541 View Pro TGG ggaaaagtgt attccttttt 0 0 77.13 55.19 21.94 Both chrX 26 8936954 8937025 View Pro AGG tccgcgttgt accttttttt 0 0 76.22 54.66 21.56 Both chrX 27 8958067 8958138 View Gly TCC tttctcaacc gatttttttt 0 0 65.40 39.07 26.33 Both chrX 28 9565820 9565891 View Glu TTC tcactcgtag gttccttttt 0 0 79.04 54.46 24.58 Both chrX 29 9567004 9567075 View Thr AGT tctcccgtcc ccgaactttt 0 0 85.45 60.72 24.73 Both chrX 30 9958493 9958565 View Lys TTT cttctcatgg tgattctttt 0 0 77.10 61.67 15.43 Both chrX 31 10668446 10668518 View Met CAT ttactcgcct atcttttttt 0 0 74.19 53.61 20.58 Both chrX 32 10669235 10669307 View Met CAT agattccatg atcttttttt 0 0 72.07 55.67 16.40 Both chrX 33 10869883 10869964 View Ser GCT gaggctcgtt aatccttttt 0 0 81.69 49.76 31.93 Both chrX 34 10966095 10966166 View Pro TGG agaagtttgt attccttttt 0 0 77.13 55.19 21.94 Both chrX 35 11516495 11516567 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrX 36 11591698 11591769 View Ala TGC ttatttgaga gatacttttt 0 0 72.66 45.20 27.46 Both chrX 37 11674808 11674879 View Trp CCA agaaagacat aaagtttttt 0 0 71.83 47.21 24.62 Both chrX 38 11892903 11892975 View Phe GAA aggagtatct attctttttt 0 0 80.05 55.38 24.67 Both chrX 39 13287604 13287675 View Gly TCC tagaatgtgc gaattctttt 0 0 73.31 46.98 26.33 Both chrX 40 13290424 13290495 View Gly TCC tagaacgtgc gagttcgttt 0 0 65.38 39.06 26.32 Both chrX 41 13587177 13587248 View Glu CTC tgatttcgtt taaaattttt 0 0 78.78 51.23 27.55 Both chrX 42 13587734 13587805 View Glu CTC cttcaacatc gaacgtttgt 0 0 80.86 53.32 27.54 Both chrX 43 13588102 13588173 View Glu CTC cattttcatc gaaacttttc 0 0 78.78 51.23 27.55 Both chrX 44 13861666 13861737 View Pro TGG tataaaatgt attcttttta 0 0 77.13 55.19 21.94 Both chrX 45 13861973 13862044 View Ser TGA tagaaattgt attcgttttg 0 0 29.98 15.79 14.19 Eufind chrX 46 13889776 13889859 View Leu CAG gtctatcacc tcactttttg 0 0 72.48 41.70 30.78 Both chrX 47 14046345 14046416 View Ala CGC tccccatgtc aatctctttt 0 0 76.66 53.19 23.47 Both chrX 48 14293269 14293353 View Ile TAT tggcgaatat aaatttttga 14293307 14293317 74.59 46.29 28.30 Both chrX 49 14729497 14729568 View Gln TTG actctcgtgc atcgtttttg 0 0 74.78 50.13 24.65 Both chrX 50 14730109 14730180 View Gln TTG gtgtttgtca atcgtttttg 0 0 74.78 50.13 24.65 Both chrX 51 14730958 14731029 View Gln CTG catctcgtgc atcgtttttg 0 0 75.15 50.49 24.66 Both chrX 52 14731866 14731937 View Gln TTG gtgttcgtca atcgtttttg 0 0 77.23 52.58 24.65 Both chrX 53 14743112 14743184 View Undet ??? gtgttcgtcc atcgttttaa 0 0 60.99 43.53 17.46 Eufind chrX 54 14743558 14743629 View Gln TTG gtgtttgtca atcgtttttt 0 0 74.78 50.13 24.65 Both chrX 55 14861265 14861336 View Thr TGT agtgcgtgtc aattgttttt 0 0 75.24 52.60 22.64 Both chrX 56 14936980 14937052 View Pro TGG atttaaatac ctcttttttc 0 0 62.94 47.03 15.91 Both chrX 57 14973479 14973550 View Trp CCA aaaagagtat aatgttttgg 0 0 71.83 47.21 24.62 Both chrX 58 15185746 15185818 View Arg TCG gttcctttgt aaatcttttt 0 0 71.77 55.02 16.75 Both chrX 59 15747339 15747410 View Gly TCC ctaataacac gtattttttt 0 0 73.31 46.98 26.33 Both chrX 60 15748345 15748416 View Gly TCC ctaaatatgc gatttgtttt 0 0 68.94 47.67 21.27 Both chrX 61 15794997 15795067 View Gly GCC gtgtattcaa attctttttg 0 0 78.62 62.98 15.64 Both chrX 62 15915042 15915113 View Cys GCA atgaccatgt acttcttttt 0 0 71.06 51.98 19.08 Both chrX 63 15915568 15915639 View Cys GCA atgaccatgt agtccttttt 0 0 71.06 51.98 19.08 Both chrX 64 15916289 15916360 View Cys GCA atgaccatgt acttcttttt 0 0 71.06 51.98 19.08 Both chrX 65 15916648 15916719 View Cys GCA atgcccatgt acttcttttg 0 0 73.99 54.91 19.08 Both chrX 66 16209649 16209720 View Met CAT gcacaatgtc gaactttttt 0 0 70.46 44.77 25.69 Both chrX 67 16478820 16478892 View Arg TCT agacattcgt aatctttttt 0 0 72.93 58.95 13.98 Both chrX 68 16479355 16479427 View Arg TCT tttctctcgt aatctttttt 0 0 72.93 58.95 13.98 Both chrX 69 16496230 16496302 View Asn GTT aggtttgtgt aaatcttttt 0 0 73.73 50.90 22.83 Both chrX 70 16731706 16731787 View Ser AGA agaaacgtct ttaaaacttt 0 0 80.44 48.88 31.56 Both chrX 71 17421156 17421227 View Pro TGG tcttcgtcgt attccttaat 0 0 77.13 55.19 21.94 Both chrX 72 17422396 17422467 View Pro TGG ttccaaatgt attccttttt 0 0 77.13 55.19 21.94 Both chrX 73 17423136 17423207 View Pro TGG ttccaaatgt attatttttt 0 0 77.13 55.19 21.94 Both chrX 74 17429937 17430008 View Pro TGG gcttccttgt attccctttt 0 0 77.13 55.19 21.94 Both chrX 75 17430800 17430871 View Pro TGG ttccaaatgt atttcttttt 0 0 77.13 55.19 21.94 Both chrX 76 17431256 17431327 View Pro TGG ttccaaatgt atttcctttt 0 0 77.13 55.19 21.94 Both chrX 77 17432525 17432596 View Pro TGG ttccaaatgt attttttttc 0 0 77.13 55.19 21.94 Both chrX 78 17451282 17451363 View Ser AGA aacgacagaa aattcttttt 0 0 76.19 46.56 29.63 Both chrX 79 17643530 17643650 View Leu CAA ccctcccgta gatctttttt 17643568 17643604 60.14 42.74 17.40 Both chrX 80 17766116 17766188 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrX 81 18835277 18835349 View Lys CTT ttttatcgcc tatatttttt 0 0 80.31 62.84 17.47 Both chrX 82 18839000 18839072 View Lys CTT ttctatcgcc tatatttttg 0 0 72.10 61.48 10.62 Both chrX 83 18844341 18844413 View Lys CTT ttctatcgcc tatatttttg 0 0 72.10 61.48 10.62 Both chrX 84 18956950 18957022 View Lys CTT ttctatcgcc tatatttttg 0 0 72.10 61.48 10.62 Both chrX 85 19357497 19357569 View Lys CTT aacatttgcc gatgtatttt 0 0 80.31 62.84 17.47 Both chrX 86 19359561 19359633 View Lys CTT gatgatcgcc gatgtttttt 0 0 80.31 62.84 17.47 Both chrX 87 19374140 19374212 View Lys CTT gactttcgcc gatgtttttt 0 0 80.31 62.84 17.47 Both chrX 88 19430086 19430158 View Lys CTT ttctatcgcc gatgtttttt 0 0 80.31 62.84 17.47 Both chrX 89 19751870 19751941 View Gly TCC agacttgtgc taaacctttt 0 0 73.31 46.98 26.33 Both chrX 90 19757942 19758013 View Glu CTC tacttttatc tatgtttttt 0 0 80.86 53.32 27.54 Both chrX 91 20233728 20233800 View Val CAC tctcccgtct ttttttgtat 0 0 83.58 58.28 25.30 Both chrX 92 19859477 19859405 View Val AAC tacacccagc tgcttctttt 0 0 77.11 49.53 27.58 Both chrX 93 19806100 19806028 View Lys TTT acactcatgg tgatgttttg 0 0 77.10 61.67 15.43 Both chrX 94 18208076 18208004 View Arg TCT tgtacatcgt aatctttttg 0 0 72.93 58.95 13.98 Both chrX 95 17450473 17450402 View Glu CTC ttctttcatc tatatttttt 0 0 80.86 53.32 27.54 Both chrX 96 17433711 17433639 View Phe GAA tctcctatct attctttttc 0 0 80.05 55.38 24.67 Both chrX 97 17432335 17432264 View Pro TGG ttccaaatgt nnnnnnnnnn 0 0 73.62 51.59 22.03 Eufind chrX 98 17429774 17429703 View Pro TGG ttccaaatgt atttcttttt 0 0 77.13 55.19 21.94 Both chrX 99 17423701 17423630 View Pro TGG agccgaacat tacttttttc 0 0 80.16 58.22 21.94 Both chrX 100 17422973 17422903 View Pro TGG gcttcattgt attccctttt 0 0 72.04 50.10 21.94 Both chrX 101 17422206 17422135 View Pro TGG ttccaaatgt atttcttttt 0 0 77.13 55.19 21.94 Both chrX 102 17421799 17421728 View Pro TGG ttccaaatgt atttcttttt 0 0 77.13 55.19 21.94 Both chrX 103 17421004 17420933 View Pro TGG ttccaaatgt attccttttt 0 0 77.13 55.19 21.94 Both chrX 104 17420649 17420577 View Phe GAA tctcctgtgt atttcttttt 0 0 80.05 55.38 24.67 Both chrX 105 17255728 17255655 View Ile AAT ccctccatca aaatcttttt 0 0 79.20 58.08 21.12 Both chrX 106 17245003 17244884 View Leu CAA tactttcgta gatctttttg 17244965 17244930 60.37 42.97 17.40 Both chrX 107 17006046 17005963 View Tyr GTA agctaatgtg tttctttttg 17006009 17005999 77.25 50.62 26.63 Both chrX 108 16975435 16975352 View Tyr GTA tgaaagcgtg tttctttttg 16975398 16975388 76.75 50.12 26.63 Both chrX 109 16815347 16815277 View Gly GCC agactctcaa attctttttt 0 0 78.62 62.98 15.64 Both chrX 110 16793638 16793557 View Leu AAG tttctcatgc gttaattttt 0 0 48.91 30.35 18.56 Eufind chrX 111 16731507 16731426 View Ser CGA ctctgaccat aatccttttt 0 0 81.04 49.48 31.56 Both chrX 112 16505610 16505529 View Leu AAG aaactcatgt gttctttttt 0 0 67.88 38.08 29.80 Both chrX 113 16505250 16505169 View Leu AAG actttgatgt gttccttttt 0 0 67.88 38.08 29.80 Both chrX 114 16502703 16502622 View Leu AAG aaactcatgt gttccttttt 0 0 67.88 38.08 29.80 Both chrX 115 16501748 16501667 View Leu AAG tatcgaatgt gctacctttt 0 0 67.88 38.08 29.80 Both chrX 116 16210842 16210769 View Ile AAT cctgccaaca aattcttttt 0 0 85.74 64.62 21.12 Both chrX 117 16209969 16209898 View Pro AGG ttactctcgt acttactttt 0 0 75.61 53.58 22.03 Both chrX 118 15753164 15753093 View Glu TTC tcatttgtag gtttcctttt 0 0 79.04 54.46 24.58 Both chrX 119 15748180 15748108 View Gly TCC ctaaacatgc gatttctgtt 0 0 51.05 33.15 17.90 Both chrX 120 15747149 15747078 View Gly TCC gtgaacatgc taatttttta 0 0 73.31 46.98 26.33 Both chrX 121 15606431 15606359 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrX 122 15271593 15271522 View Pseudo ATC tagacgtcag ctttcgtttt 0 0 20.44 21.68 -1.24 Eufind chrX 123 15120023 15119940 View Leu TAA aatcgcgtac gatttttttg 0 0 76.00 45.47 30.53 Both chrX 124 14997754 14997683 View Gln TTG gagagtgtac atcgttttgt 0 0 74.78 50.13 24.65 Both chrX 125 14991117 14991046 View Gln TTG gagagtgtac atcgttttgt 0 0 74.78 50.13 24.65 Both chrX 126 14934348 14934267 View Ser AGA gacaagacgt aatctttttt 0 0 80.44 48.88 31.56 Both chrX 127 14861696 14861625 View Thr TGT agtatttatc tgacttttta 0 0 76.98 54.34 22.64 Both chrX 128 14770702 14770621 View Ser AGA agaaacatgt ttatcttttt 0 0 80.44 48.88 31.56 Both chrX 129 14743373 14743302 View Gln TTG gtgttcgtcc atcgtttttg 0 0 71.13 52.26 18.87 Both chrX 130 14731701 14731630 View Gln TTG gtgttcgtca atcgttttgt 0 0 74.78 50.13 24.65 Both chrX 131 14731348 14731277 View Gln CTG catctcgtgc atcgtttttg 0 0 74.41 51.47 22.94 Both chrX 132 14729954 14729883 View Gln TTG gtgtttgtca atcgtttttg 0 0 61.56 44.26 17.30 Both chrX 133 14360049 14359978 View Thr TGT tctcttgtcc aatatttttt 0 0 75.24 52.60 22.64 Both chrX 134 14339330 14339259 View Pro TGG atttaaatgt attccttttg 0 0 77.13 55.19 21.94 Both chrX 135 14292769 14292685 View Ile TAT ttgtggatgt aatttttttg 14292731 14292721 73.01 44.71 28.30 Both chrX 136 14292351 14292267 View Ile TAT agatggatgt aatttttttt 14292313 14292303 74.86 46.57 28.29 Both chrX 137 14287451 14287368 View Tyr GTA tactttcgtg tttctttttt 14287414 14287404 76.75 50.12 26.63 Both chrX 138 14113349 14113277 View Val TAC tccgaccaga tttctttatt 0 0 78.12 51.99 26.13 Both chrX 139 14048377 14048296 View Ser TGA gctgttttgt tcgacttttt 0 0 77.98 42.91 35.07 Both chrX 140 13976862 13976781 View Leu AAG tagttcatgt gttctttttt 0 0 67.88 38.08 29.80 Both chrX 141 13754848 13754776 View Arg ACG aattgtgtct aaactgtttt 0 0 64.95 51.92 13.03 Both chrX 142 13659959 13659887 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrX 143 13455814 13455732 View Pseudo GCC ttgggttgtt aatcccgtat 13455777 13455768 23.55 39.28 -15.73 Eufind chrX 144 13290257 13290186 View Gly TCC aagaaagcca tgaatttttt 0 0 72.36 47.40 24.96 Both chrX 145 13287435 13287364 View Gly TCC aagacatcca tgattttttt 0 0 73.31 46.98 26.33 Both chrX 146 13275384 13275312 View Asn GTT tgtcccatgt aaaatttttt 0 0 73.73 50.90 22.83 Both chrX 147 12706379 12706308 View Gly TCC aagaaatcca ataattttaa 0 0 73.31 46.98 26.33 Both chrX 148 12476213 12476142 View Thr AGT tgtcttgtcc ccgaactttt 0 0 85.45 60.72 24.73 Both chrX 149 12205109 12205028 View Leu AAG tatttcatgc gttccttttt 0 0 65.79 35.99 29.80 Both chrX 150 11596591 11596520 View Ala TGC tatctcttgt gattactttt 0 0 72.66 45.20 27.46 Both chrX 151 11488340 11488268 View Arg ACG gcctccaact aaactttttt 0 0 71.61 57.29 14.32 Both chrX 152 10965885 10965814 View Pro TGG tgaatagtgt attccttttt 0 0 77.13 55.19 21.94 Both chrX 153 10682621 10682540 View Ser TGA cgcccttcgt tcaagttttt 0 0 82.50 52.17 30.33 Both chrX 154 10502375 10502303 View Phe GAA agaagtgtgt attctttttt 0 0 80.50 56.53 23.97 Both chrX 155 10249290 10249217 View Ile AAT ggttaacatg aattcttttt 0 0 85.74 64.62 21.12 Both chrX 156 10194480 10194409 View His GTG ctctctttcg actctttttg 0 0 74.47 48.59 25.88 Both chrX 157 9524863 9524792 View Ala TGC atgagtgtga gaaaacgttt 0 0 72.66 45.20 27.46 Both chrX 158 9215563 9215482 View Tyr GTA atcttttcgt ctttttattt 9215525 9215514 22.55 16.12 6.43 Eufind chrX 159 8288109 8288038 View Thr AGT tctttcgtcc ccgaaatttt 0 0 85.45 60.72 24.73 Both chrX 160 7914919 7914848 View Glu CTC tttgaatgtc tatcttttta 0 0 80.86 53.32 27.54 Both chrX 161 7193032 7192960 View Arg ACG aggtgcatgt aaatcttttt 0 0 71.61 57.29 14.32 Both chrX 162 7192169 7192097 View Arg ACG gagtgcatgt aaatttttgg 0 0 71.61 57.29 14.32 Both chrX 163 7191595 7191523 View Arg ACG ggagacgtgt aaactttttg 0 0 71.61 57.29 14.32 Both chrX 164 6915023 6914952 View Ala AGC tgcgccatgc gaattctttt 0 0 69.87 40.11 29.76 Both chrX 165 5946483 5946412 View Gly TCC agtttgtggc gatttttatt 0 0 73.31 46.98 26.33 Both chrX 166 5701048 5700967 View Leu TAG aatatattgc actccttttt 0 0 69.61 40.34 29.27 Both chrX 167 5699314 5699233 View Leu TAG tgttaaatgc acttcttttt 0 0 69.61 40.34 29.27 Both chrX 168 5230576 5230505 View Glu CTC caatttcatc tatctttttt 0 0 80.86 53.32 27.54 Both chrX 169 4790521 4790449 View Asn GTT agacttgcct aaactttttt 0 0 73.73 50.90 22.83 Both chrX 170 4508252 4508180 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrX 171 4331723 4331652 View Thr AGT tctctcgcca ccgaactttt 0 0 85.45 60.72 24.73 Both chrX 172 4328082 4328009 View Ile AAT aggttgtgtg aacatttttg 0 0 85.74 64.62 21.12 Both chrX 173 4307616 4307545 View Asp GTC caccaatgtg aaatcttttt 0 0 66.04 41.34 24.70 Both chrX 174 4241575 4241505 View Gly GCC tggtatataa atttcttttt 0 0 78.62 62.98 15.64 Both chrX 175 2523000 2522928 View Pseudo AGT gtcgcctctt tacttttttc 0 0 22.33 29.80 -7.47 Eufind chrX 176 2362039 2361968 View Ala AGC cacggtgtgc gaaatctttt 0 0 69.87 40.11 29.76 Both chrX 177 2347413 2347342 View Ala AGC ctagtcgtgc gaaatttttt 0 0 69.87 40.11 29.76 Both chrX 178 2341263 2341192 View Ala AGC ctagtcgtgc gaaatttttt 0 0 69.87 40.11 29.76 Both chrX 179 2259852 2259780 View Val AAC ccccttcagc gatatttttt 0 0 72.74 41.90 30.84 Both chrX 180 2065626 2065555 View Pseudo TGG aaaagcacgt ttacattcgc 0 0 45.10 45.64 -0.54 Eufind chrX 181 1368697 1368625 View Arg TCG aagggaatgt aaatcatttt 0 0 71.77 55.02 16.75 Both chrX 182 1153666 1153598 View Pseudo GCC ccagtgagat ccgcccggag 0 0 45.19 44.72 0.47 Eufind chrX 183 1100613 1100542 View His GTG tttactttcg acgctttttg 0 0 74.47 48.59 25.88 Both chrX 184 861942 861859 View Tyr GTA agcgtgtgtg attctttttg 861905 861895 77.25 50.62 26.63 Both chrX 185 512007 511936 View Gln TTG gggagtgtgc actgtttttg 0 0 74.78 50.13 24.65 Both chrX 186 476952 476880 View Val AAC cttactcagg gttgaatatt 0 0 48.38 29.98 18.40 Eufind   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrUn 1 782161 782233 View Arg TCT gctctttcgt agtctttatt 0 0 61.43 51.06 10.37 Eufind chrUn 2 818269 818340 View Met CAT agctgtcggc gaaccttttt 0 0 70.46 44.77 25.69 Both chrUn 3 854054 854125 View Met CAT gtctcttgtc gaatcttttt 0 0 70.46 44.77 25.69 Both chrUn 4 874016 874087 View Pseudo TTT gaccttgttg acttcttttt 0 0 24.05 41.68 -17.63 Eufind chrUn 5 1528443 1528514 View Pseudo GTC agacgacaag tttcgttttt 0 0 22.75 31.66 -8.91 Eufind chrUn 6 1993260 1993331 View Trp CCA ccgcttccgt aacttttttt 0 0 71.83 47.21 24.62 Both chrUn 7 2010377 2010449 View Lys TTT tctcccatgg tgatgttttg 0 0 77.10 61.67 15.43 Both chrUn 8 2012242 2012313 View Ala AGC ctcaatgtgc gaaccttttt 0 0 69.87 40.11 29.76 Both chrUn 9 2167709 2167778 View Asn GTT ggcagtcccc aacttttttt 0 0 28.97 17.65 11.32 Eufind chrUn 10 2226522 2226594 View Pseudo GGC accaactttt aaattattga 0 0 28.36 34.73 -6.37 Eufind chrUn 11 2227109 2227181 View Pseudo GGC accaattttt aatttctttg 0 0 31.18 46.41 -15.23 Eufind chrUn 12 2230899 2230970 View Pseudo GGC accaattttg aaattattga 0 0 24.09 30.90 -6.81 Eufind chrUn 13 2311521 2311592 View Pro TGG aacaaaatgt attccttttt 0 0 77.13 55.19 21.94 Both chrUn 14 2492322 2492394 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrUn 15 2622398 2622470 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrUn 16 2819306 2819377 View Gly TCC cactgtcggc gatttctttt 0 0 73.31 46.98 26.33 Both chrUn 17 3011461 3011533 View Met CAT ggagttgtct atttatttta 0 0 74.19 53.61 20.58 Both chrUn 18 3346208 3346280 View Asn GTT tctctcgcct agactttttt 0 0 73.73 50.90 22.83 Both chrUn 19 3347290 3347362 View Lys TTT ctctctcggg tgatcttttt 0 0 77.10 61.67 15.43 Both chrUn 20 3819519 3819589 View Gly GCC ttcaaacgac atttttttaa 0 0 78.62 62.98 15.64 Both chrUn 21 4043989 4044070 View Leu AAG tttgaaatgt gtcttttttg 0 0 65.79 35.99 29.80 Both chrUn 22 4078111 4078182 View Gly TCC ttgaacgtgg gatctctttt 0 0 73.31 46.98 26.33 Both chrUn 23 4401417 4401489 View Pseudo AGT gtcgcctctt tacttttttc 0 0 25.28 28.51 -3.23 Eufind chrUn 24 4598802 4598874 View Asn GTT tgcgacctgt aaatcttttt 0 0 73.73 50.90 22.83 Both chrUn 25 5083604 5083683 View Ser CGA gagccctttt caacacttct 0 0 37.75 27.08 10.67 Eufind chrUn 26 5182360 5182432 View Pseudo GGT gtcgcctttt tacttttttc 0 0 20.81 28.90 -8.09 Eufind chrUn 27 5301298 5301370 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrUn 28 5434368 5434439 View Trp CCA ctcacggtgt aagccttttt 0 0 71.83 47.21 24.62 Both chrUn 29 5435433 5435500 View SeC TCA cgcttccgtg ttccgaatgc 0 0 28.83 0.00 0.00 Eufind chrUn 30 5659920 5659992 View Arg ACG aggcaaatgt aaaacatatt 0 0 71.61 57.29 14.32 Both chrUn 31 5740742 5740813 View Glu CTC ctctcaccgc gatgcttttt 0 0 80.86 53.32 27.54 Both chrUn 32 6500850 6500922 View Pseudo TTT tcagctgtgg cttctttttt 0 0 25.12 44.98 -19.86 Eufind chrUn 33 6518609 6518681 View Val CAC aacaacgtgc actctttttg 0 0 80.71 52.67 28.04 Both chrUn 34 7003077 7003149 View Pseudo TTG cctcttatgt aaactttgtt 0 0 25.58 49.65 -24.07 Eufind chrUn 35 7041554 7041625 View Ala AGC ctcaatgtgc gaaccttttt 0 0 69.87 40.11 29.76 Both chrUn 36 6839428 6839357 View Pro TGG tttcaagtgt attccttttt 0 0 77.13 55.19 21.94 Both chrUn 37 6599635 6599563 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrUn 38 6552532 6552462 View Pseudo AGT gtcgcctctt tttacttttt 0 0 21.08 33.60 -12.52 Eufind chrUn 39 6521145 6521073 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrUn 40 6486094 6486023 View Asp GTC atcttgtgtg aatttttttc 0 0 66.04 41.34 24.70 Both chrUn 41 6481900 6481829 View Asp GTC ttctctcgtg aaacttttta 0 0 66.04 41.34 24.70 Both chrUn 42 6478003 6477932 View Asp GTC ttctcccgtg aaatattttt 0 0 66.04 41.34 24.70 Both chrUn 43 6471311 6471240 View Asp GTC ttctcccgtg aaattttttt 0 0 66.04 41.34 24.70 Both chrUn 44 5456854 5456783 View Trp CCA ttccttccgt aagtcttttt 0 0 71.83 47.21 24.62 Both chrUn 45 5451543 5451474 View Trp CCA gcgcctttaa aagtcttttt 0 0 31.14 25.36 5.78 Eufind chrUn 46 5450256 5450185 View Trp CCA attctcctgt aagtcttttt 0 0 71.83 47.21 24.62 Both chrUn 47 4786236 4786164 View Pseudo TTC acccacctct cattactttt 0 0 34.71 51.66 -16.95 Eufind chrUn 48 4682502 4682432 View Gly GCC atgtctcgtg attctttttt 0 0 78.62 62.98 15.64 Both chrUn 49 4517617 4517536 View Ser TGA atcaagccgt gatatgtttt 0 0 82.64 53.58 29.06 Both chrUn 50 4078011 4077940 View Gly TCC cttgaagtgt gatctctttt 0 0 73.31 46.98 26.33 Both chrUn 51 3822955 3822883 View Met CAT tcgttcccgt atcctttttt 0 0 74.19 53.61 20.58 Both chrUn 52 3635327 3635255 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrUn 53 3553342 3553270 View Pseudo AGT gtcgcctctt tacttttttc 0 0 20.52 28.62 -8.10 Eufind chrUn 54 3347829 3347758 View Pro TGG tttcaaatgt atttcttttt 0 0 77.13 55.19 21.94 Both chrUn 55 3213833 3213761 View Asn GTT cctctcagcg aaactttttg 0 0 58.52 35.67 22.85 tRNAscan chrUn 56 2930177 2930105 View Phe GAA gttctcgtgt attccttttt 0 0 80.05 55.38 24.67 Both chrUn 57 2645047 2644976 View Ala CGC ctacgtgttc aagtttcttt 0 0 74.48 53.75 20.73 Both chrUn 58 2228165 2228092 View Pseudo GGC atcaactttg gttgatggaa 0 0 28.10 34.10 -6.00 Eufind chrUn 59 1995907 1995826 View Leu AAG tggtgcgtgt gttccttttt 0 0 67.88 38.08 29.80 Both chrUn 60 1397906 1397835 View Ala TGC gaaagggtgt gattactttt 0 0 72.66 45.20 27.46 Both chrUn 61 1259720 1259648 View Phe GAA tctcttgtct atttcttttt 0 0 80.05 55.38 24.67 Both chrUn 62 1068721 1068649 View Pseudo AAT gtcgcctctt tacttttttc 0 0 20.57 28.66 -8.09 Eufind chrUn 63 852280 852208 View Arg TCT agtctctcgt aatctttttt 0 0 74.35 60.37 13.98 Both chrUn 64 819399 819328 View Met CAT agacatcggt gaaacttatt 0 0 70.46 44.77 25.69 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.