tRNAscan-SE Analysis of the Caulobacter crescentus Genome

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[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	76150	76225	View	Thr	CGT	0	0	87.10	58.15	28.95	Both
chr	2	556002	556078	View	Arg	ACG	0	0	85.54	58.89	26.65	Both
chr	3	816274	816348	View	Val	GAC	0	0	85.42	61.72	23.70	Both
chr	4	1031170	1031243	View	Gln	TTG	0	0	58.25	26.47	31.78	Both
chr	5	1115924	1116013	View	Ser	GGA	0	0	74.61	46.46	28.15	Both
chr	6	1187706	1187780	View	Gly	GCC	0	0	91.12	68.76	22.36	Both
chr	7	1187831	1187905	View	Gly	GCC	0	0	91.12	68.76	22.36	Both
chr	8	1397190	1397273	View	Tyr	GTA	0	0	53.83	34.47	19.36	Eufind
chr	9	1397384	1397457	View	Gly	TCC	0	0	78.75	57.37	21.38	Both
chr	10	1465800	1465874	View	Asn	GTT	0	0	92.60	66.27	26.33	Both
chr	11	1466010	1466084	View	Asn	GTT	0	0	92.60	66.27	26.33	Both
chr	12	1523391	1523467	View	Pro	GGG	0	0	83.53	59.36	24.17	Both
chr	13	1538900	1538974	View	Glu	TTC	0	0	57.79	33.08	24.71	Eufind
chr	14	1539020	1539094	View	Glu	TTC	0	0	57.79	33.08	24.71	Eufind
chr	15	1540445	1540521	View	Pro	TGG	0	0	84.27	62.90	21.37	Both
chr	16	1540882	1540958	View	Arg	TCT	0	0	91.41	69.21	22.20	Both
chr	17	1756063	1756137	View	Lys	TTT	0	0	93.63	69.49	24.14	Both
chr	18	2018493	2018582	View	Ser	TGA	0	0	78.98	45.53	33.45	Both
chr	19	2151696	2151772	View	Asp	GTC	0	0	96.44	81.66	14.78	Both
chr	20	2151837	2151913	View	Asp	GTC	0	0	96.44	81.66	14.78	Both
chr	21	2430972	2431046	View	Gly	CCC	0	0	87.58	65.85	21.73	Both
chr	22	2509083	2509157	View	Val	CAC	0	0	86.65	63.72	22.93	Both
chr	23	2551641	2551715	View	Thr	GGT	0	0	85.05	66.46	18.59	Both
chr	24	2582010	2582083	View	Cys	GCA	0	0	76.46	55.49	20.97	Both
chr	25	2893438	2893522	View	Leu	TAA	0	0	74.42	52.10	22.32	Both
chr	26	3848459	3848534	View	Ala	GGC	0	0	89.04	70.56	18.48	Both
chr	27	3880543	3880468	View	Ala	CGC	0	0	90.21	77.27	12.94	Both
chr	28	3856869	3856783	View	Leu	CAG	0	0	79.22	48.89	30.33	Both
chr	29	3770012	3769936	View	Ile	GAT	0	0	92.03	64.80	27.23	Both
chr	30	3769868	3769793	View	Ala	TGC	0	0	95.36	82.86	12.50	Both
chr	31	3766425	3766349	View	Met	CAT	0	0	81.53	54.09	27.44	Both
chr	32	3461519	3461444	View	Trp	CCA	0	0	87.30	62.83	24.47	Both
chr	33	3417958	3417882	View	Met	CAT	0	0	82.05	69.70	12.35	Both
chr	34	2839981	2839905	View	Ile	GAT	0	0	92.03	64.80	27.23	Both
chr	35	2839837	2839762	View	Ala	TGC	0	0	95.36	82.86	12.50	Both
chr	36	2836394	2836318	View	Met	CAT	0	0	81.53	54.09	27.44	Both
chr	37	2630527	2630437	View	Ser	GCT	0	0	68.28	41.03	27.25	Both
chr	38	2542752	2542677	View	Phe	GAA	0	0	92.55	72.91	19.64	Both
chr	39	2537440	2537364	View	His	GTG	0	0	85.87	62.81	23.06	Both
chr	40	2495562	2495487	View	Met	CAT	0	0	81.76	61.99	19.77	Both
chr	41	2395908	2395824	View	Leu	CAA	0	0	72.11	48.61	23.50	Both
chr	42	2383007	2382923	View	Leu	GAG	0	0	70.40	35.25	35.15	Both
chr	43	2162672	2162588	View	Leu	TAG	0	0	76.79	52.12	24.67	Both
chr	44	2154567	2154493	View	Val	TAC	0	0	90.05	68.15	21.90	Both
chr	45	1374032	1373958	View	Thr	TGT	0	0	85.16	62.49	22.67	Both
chr	46	1265691	1265616	View	Lys	CTT	0	0	97.50	71.76	25.74	Both
chr	47	1068550	1068474	View	Met	CAT	0	0	82.05	69.70	12.35	Both
chr	48	1031005	1030929	View	Pro	CGG	0	0	87.55	61.32	26.23	Both
chr	49	694411	694335	View	Arg	CCT	0	0	86.31	67.32	18.99	Both
chr	50	473144	473055	View	Ser	CGA	0	0	74.74	38.33	36.41	Both
chr	51	200201	200125	View	Arg	CCG	0	0	86.37	55.76	30.61	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.