tRNAscan-SE Analysis of the Caulobacter crescentus Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGCTGGTAGAGCGCTTGAATGGCATTCAAGAG...........GtCAGCGGTTCGACTCCGCTTAGCTCCACCA chr.trna26-AlaGGC Sc: 89.04  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGCTCAGATGGTAGAGCGCCTCGTTCGCAATGAGGAG...........GtCAGGGGTTCGATTCCCCTCGGCTCCACCA chr.trna27-AlaCGC Sc: 90.21  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GGGGCCATAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGAT...........GtCGTCGGTTCGAATCCGTCTGGCTCCACCA chr.trna35-AlaTGC Sc: 95.36  
GGGGCCATAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGAT...........GtCGTCGGTTCGAATCCGTCTGGCTCCACCA chr.trna30-AlaTGC Sc: 95.36  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAGCTGGAtAGAGCATCAGACTACGAATCTGAGG...........GtCGGACGTTCGAATCGTTCCGGGCGCGCCA chr.trna2-ArgACG Sc: 85.54  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAGCTGGAtAGAGCGTTGCCCTCCGAAGGCAAAG...........GtCACACGTTCGAATCGTGTCGGGTGCGCCA chr.trna51-ArgCCG Sc: 86.37  


>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGCCCGGTAGCTCAGCAGGAtAGAGCAGCGCTTTCCTAAAGCGAAG...........GtCGGGGGTTCGAGTCCCTCCCGGGCCGCCA chr.trna49-ArgCCT Sc: 86.31  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCTTAGCTCAGACGGAtAGAGCATTCGCCTTCTAAGCGAACG...........GtCGCAGGTTCGAATCCTGCAGGGCGCGCCA chr.trna16-ArgTCT Sc: 91.41  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCGCGGTAGCTCAGTGGTA.GAGCAGCCGGCTGTTAACCGGCTG...........GtCGTAGGTTCGAATCCTACCCGCGGAGCCA chr.trna11-AsnGTT Sc: 92.60  
TCCGCGGTAGCTCAGTGGTA.GAGCAGCCGGCTGTTAACCGGCTG...........GtCGTAGGTTCGAATCCTACCCGCGGAGCCA chr.trna10-AsnGTT Sc: 92.60  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGATGTAGCTCAGTTGGTtAGAGCGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCATTCGCGCCA chr.trna20-AspGTC Sc: 96.44  
GCGGATGTAGCTCAGTTGGTtAGAGCGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCATTCGCGCCA chr.trna19-AspGTC Sc: 96.44  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCGGTGGCGGAGTGGTG.ACGCAGCGGACTGCAAATCCGTGC...........ACGCCGGTTCGATTCCGGCCCGGGCCTCCA chr.trna24-CysGCA Sc: 76.46  



Gln tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
TGGGGAATGGTGTAATGGTA.ACACTGCGGTTTTTGGTACCGTC...........AtTCTAGGTTCGAGTCCTAG.TTCCCCAGCCA chr.trna4-GlnTTG Sc: 58.25  



Glu tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTCCCTTCGTCTATCGGTtA.GGACGCCAGATTTTCAATCTGGAG...........AGAGGGGTTCGACTCCCCTAGGGACTGCCA chr.trna14-GluTTC Sc: 57.79  
GGTCCCTTCGTCTATCGGTtA.GGACGCCAGATTTTCAATCTGGAG...........AGAGGGGTTCGACTCCCCTAGGGACTGCCA chr.trna13-GluTTC Sc: 57.79  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGCGTAGCTCAGTGGTA.GAGCGCCACCTTGCCAAGGTGGAT...........GtCGAGAGTTCGAATCTCTTCGCCCGCTCCA chr.trna7-GlyGCC Sc: 91.12  
GCGGGCGTAGCTCAGTGGTA.GAGCGCCACCTTGCCAAGGTGGAT...........GtCGAGAGTTCGAATCTCTTCGCCCGCTCCA chr.trna6-GlyGCC Sc: 91.12  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGCGTAGTTCAGAGGTA.GAACGTCAGCTTCCCAAGCTGAAT...........GtCGGGGGTTCGATTCCCCCCGCCCGCTCCA chr.trna21-GlyCCC Sc: 87.58  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTATAGCACAATGGTA.GTGCAGCAGCCTTCCAAGCTGAGG...........A.TGCGGGTTCGATTCCCGCTACCCGCTCCA chr.trna9-GlyTCC Sc: 78.75  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGCTTAGCTCAGTTGGTtAGAGCGCTAGATTGTGGATCTAGAG...........GtCCTCGGTTCGAGCCCGAGAGCTGGTACCA chr.trna39-HisGTG Sc: 85.87  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCCTGTAGCTCAGGTGGTtAGAGCGTACGCCTGATAAGCGTAAG...........GtCGGCAGTTCGAGTCTGCCCAGGCCTACCA chr.trna34-IleGAT Sc: 92.03  
AGGCCTGTAGCTCAGGTGGTtAGAGCGTACGCCTGATAAGCGTAAG...........GtCGGCAGTTCGAGTCTGCCCAGGCCTACCA chr.trna29-IleGAT Sc: 92.03  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGTCGTGGCGGAATTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGG..GCAA.......CCCGTGGAAGTTCGAGTCTTCT.CGACCGCACCA chr.trna42-LeuGAG Sc: 70.40  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGCGGAATTGGTaGACGCGCTGGCTTCAGGTGCCAGTGACC.GAAA......GGTCGTGGAGGTTCGAGTCCTCT.CCTGGGCACCA chr.trna28-LeuCAG Sc: 79.22  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.>.........<.<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGATGTGGCGAAACTGGTaGACGCACTGGATTTAGGTTCCAGCGCCGC.........GAGGCGTGGAGGTTCGAGTCCTCT.CATCCGCACCA chr.trna43-LeuTAG Sc: 76.79  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGCGTGGTGAAACTGGTaGACGCGCCGGACTCAAAATCCGGTTCC..GAAA.......GGAGTGTCGGTTCGACCCCGAC.CGCCCGCACCA chr.trna41-LeuCAA Sc: 72.11  

>>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>.............<<<..>>>>>.......<<<<<.<<<<<<<....
GGGGACGTGGCGGAATCGGTaGACGCGCCGGACTTAAAATCCGTTGGA..GCAA.......TCCGTGTGGGTTCGAGTCCCAC.CGTCCCTACCA chr.trna25-LeuTAA Sc: 74.42  



Lys tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGTATAGCTCAGTTGGTA.GAGCAGCTGACTCTTAATCAGCGG...........GtCCAAGGTTCGAATCCTTGTACACCCACCA chr.trna46-LysCTT Sc: 97.50  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGT.GGTA.GAGCATTCGACTTTTAATCGAATG...........GtCCTGGGTTCGAGTCCCAGCCGGCCTACCA chr.trna17-LysTTT Sc: 93.63  



Met tRNAs


>>>.>>>..>>>>...........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<.<<<....
GGCTGGGTAGCTCAGAT.GGTtA.GAGCGGTGGATTCATAACCCACAG...........GtCGGCGGTTCGATCCCGCCCCCCGCCACCA chr.trna47-MetCAT Sc: 82.05  
GGCTGGGTAGCTCAGAT.GGTtA.GAGCGGTGGATTCATAACCCACAG...........GtCGGCGGTTCGATCCCGCCCCCCGCCACCA chr.trna33-MetCAT Sc: 82.05  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTGTAGCTCAAT..GGTtA.GAGCCGACCGCTCATAACGGTCTG...........GtTGGGGGTTCGAGTCCCTCCGGGCCTACCA chr.trna40-MetCAT Sc: 81.76  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GtCACAGGTTCAAATCCTGTCCCCGCACCCA chr.trna36-MetCAT Sc: 81.53  
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GtCACAGGTTCAAATCCTGTCCCCGCACCCA chr.trna31-MetCAT Sc: 81.53  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTGGGTAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGT...........GtCGCTGGTTCGATTCCGGCCCCAGGCACCA chr.trna38-PheGAA Sc: 92.55  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGCGTGGCGCAGCCtGGTAGCGCACTTGACTGGGGGTCAAGGG...........GtCGCAGGTTCGAATCCTGTCGCTCCGACCA chr.trna12-ProGGG Sc: 83.53  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTGTGGCTCAGTCtGGTAGAGCACTGCGTTCGGGACGCAGGG...........GtCGCAGGTTCAAATCCTGCCACTCCGACCA chr.trna48-ProCGG Sc: 87.55  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGCGTAGCGCAGCCtGGTAGCGCATCTGTTTTGGGAGCAGAGG...........GtCGCAGGTTCAAATCCTGCCGCTCCGACCA chr.trna15-ProTGG Sc: 84.27  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGTGAGGTGGCCGAGTGGTtgA.AGGCGCACGCCTGGAACGCGTGT.ATAGGGGAAA...CTCTAT..CGAGGGTTCGAATCCCTC..TCTCACCGCCA chr.trna5-SerGGA Sc: 74.61  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTcgA.ATGCGCCGCACTCGAAATGCGGT.TTACGTGAAA...GCGTAA..CGTGGGTTCGAATCCCAC..CCTCTCCGCCA chr.trna50-SerCGA Sc: 74.74  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGACAGGTGGCCGAGTGGTttA.AGGCAGCGGTCTTGAAAACCGCC.GTAGGTGGAA...GCCTAC..CGTGGGTTCGAATCCCAC..CCTGTCCGCCA chr.trna18-SerTGA Sc: 78.98  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>...........<<.....>>>>>.......<<<<<..<<<<<<<....
GGAGACGTGGCCGAGAGGCtgA.AGGCACCGCTTTGCTAAAGCGGCATACC..TCAAaa...GGGTAtCGAGGGTTCGAATCCCTC..CGTCTCCGCCA chr.trna37-SerGCT Sc: 68.28  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGT.GGTA.GAGCGCATCCTTGGTAAGGCTGAG...........GtCGGCAGTTCAATCCTGCCCGGCGGCACCA chr.trna23-ThrGGT Sc: 85.05  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCTTAGCTCAGCCGGTA.GAGCGGCGCATTCGTAATGCGTAG...........GtCAGGTGTTCGAGTCACCTAGGCGGCACCA chr.trna1-ThrCGT Sc: 87.10  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGGCTTAGCACAGC.GGTA.GTGCAGCGGTTTTGTAAACCGAAG...........GtCGGGGGTTCGATCCCCTCAGCCGGCACCA chr.trna45-ThrTGT Sc: 85.16  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGAGTGTAGCTCAGCTGGTAGAGCATCGGTCTCCAAAACCGAGG...........GcCGGGGGTTCGAGTCCCTCCACTCCTGCCA chr.trna32-TrpCCA Sc: 87.30  



Tyr tRNAs



>>>>>...>>>...........<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<......
GGGAATGtCCCGAGTGGCaA.AGGGGGGGGACTGTAAATCCCCTGGCGTAA....GCCTtCGTAGGTTCGAGTCCTAC.TTCCCCCACCA chr.trna8-TyrGTA Sc: 53.83  



Val tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACGCGTAGCTCAGCGGGA.GAGCACTACGTTGACATCGTAGGG...........GtCACAGGTTCAATCCCTGTCGCGTCCACCA chr.trna3-ValGAC Sc: 85.42  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGATGCGTAGCTCAGCGGGA.GAGCACCTCGTTCACACCGAGGGG...........GtCACAGGTTCAATCCCTGTCGCATCCACCA chr.trna22-ValCAC Sc: 86.65  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCAGTTAGCTCAGCGGTA.GAGCGTCTCGTTTACACCGAGAGG...........GtCGGGGGTTCGATCCCCTCACTGCCCACCA chr.trna44-ValTAC Sc: 90.05

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.