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tRNAscan-SE Analysis of Candida glabrata CBS138

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrMT 1 13 86 Met CAT aatattttaa ttaactacaa 0 0 50.50 23.09 27.41 Both chrMT 2 1661 1732 Asn GTT aattaattta tatatataat 0 0 70.82 45.73 25.09 Both chrMT 3 1752 1823 Ala TGC tataaataag taaatatata 0 0 47.04 20.80 26.24 Both chrMT 4 1858 1930 Ile GAT tataattata atataaagga 0 0 44.43 16.07 28.36 Both chrMT 5 1936 2006 SeC TCA tttcaatata gtataagtaa 0 0 45.39 0.00 0.00 Both chrMT 6 5203 5275 Thr TGT atttaataaa tatatatata 0 0 66.86 41.37 25.49 Both chrMT 7 5291 5361 His GTG atatataaag cttagatctt 0 0 47.05 14.38 32.67 Both chrMT 8 5366 5437 Glu TTC tttaccctta atatataaaa 0 0 42.03 12.34 29.69 Eufind chrMT 9 6888 6960 Met CAT taattataaa tatatatata 0 0 39.79 11.73 28.06 Eufind chrMT 10 16211 16282 Phe GAA agtaataata ttaatataag 0 0 52.96 26.29 26.67 Eufind chrMT 11 16292 16364 Pseudo TTA attaatataa aataaataaa 0 0 38.56 5.71 32.85 Eufind chrMT 12 16383 16455 Pseudo GCA aaaataaaaa tataatatat 0 0 28.88 9.43 19.45 Eufind chrMT 13 16471 16543 Val TAC tatatacatt catttaataa 0 0 61.33 31.43 29.90 Both chrMT 14 17616 17697 Leu TAA attatatata tatcttaata 0 0 42.31 10.52 31.79 Both chrMT 15 17714 17786 Pseudo TTG aataattata tattaattat 0 0 29.02 -9.96 38.98 tRNAscan chrMT 16 17818 17889 Lys TTT atattttata attaatatat 0 0 34.35 19.58 14.77 Both chrMT 17 17915 17987 Arg TCT taacattata taagtaataa 0 0 58.95 27.65 31.30 Both chrMT 18 18004 18075 Pseudo TCC ataaaataaa tattttaatg 0 0 45.44 1.18 44.26 Both chrMT 19 18085 18156 Pseudo GTC atattttaat ttatatatat 0 0 30.66 0.07 30.59 tRNAscan chrMT 20 18281 18367 Ser TGA tataaataaa taatatataa 0 0 43.41 17.55 25.86 Both   chrA 1 150765 150862 Phe GAA aagttaataa atttattttt 150802 150826 69.02 41.73 27.29 Both chrA 2 213723 213795 Ala AGC tcaaaacatt ttttttatta 0 0 75.92 52.32 23.60 Both chrA 3 259210 259282 Met CAT caaataatat ttttcttttt 0 0 73.99 56.05 17.94 Both chrA 4 387647 387576 Asp GTC aaatcaccaa atttattttt 0 0 60.99 33.38 27.61 Both chrA 5 382884 382813 His GTG catttaatat attttttttt 0 0 65.11 38.69 26.42 Both chrA 6 355521 355449 Ala TGC cagtttatct ttattttttt 0 0 76.57 56.87 19.70 Both chrA 7 221999 221928 Gln TTG aacttcaaaa attatttttt 0 0 70.23 46.39 23.84 Both chrA 8 201908 201838 Gly GCC aagacactaa tttttttatc 0 0 62.73 36.41 26.32 Both chrA 9 71735 71627 Pro TGG aaattggtta aatttttttg 71699 71663 60.55 38.75 21.80 Both   chrB 1 93733 93851 Leu CAA agtacaatat ttattttttt 93771 93807 54.74 28.43 26.31 Both chrB 2 309417 309535 Leu CAA aatacgatat ttattttttt 309455 309491 54.74 28.43 26.31 Both chrB 3 399907 399978 Thr TGT atatcgagtt atttctctca 0 0 79.33 61.25 18.08 Both chrB 4 486877 486950 Asn GTT ctaccattgc aatttttttt 0 0 76.93 50.20 26.73 Both chrB 5 485118 485047 Pro AGG gttctttgaa ccattttttt 0 0 66.45 48.91 17.54 Both chrB 6 373322 373214 Trp CCA agaaatagat tttatatttt 373286 373250 63.92 43.08 20.84 Both chrB 7 153812 153740 Arg ACG aatattcttg aattattttt 0 0 73.20 51.26 21.94 Both chrB 8 118800 118728 Thr AGT gattaagtaa tttttttagt 0 0 72.75 47.41 25.34 Both chrB 9 8880 8762 Leu CAA taaattaagt ttttttttta 8842 8806 54.74 28.43 26.31 Both   chrC 1 370244 370315 Asp GTC aaatcactaa attttctttt 0 0 60.99 33.38 27.61 Both chrC 2 376932 377003 Arg TCT caaatagtaa ctttttttta 0 0 66.88 46.99 19.89 Both chrC 3 441493 441601 Leu TAG atcacaatat ttaatttttt 441531 441557 61.88 34.55 27.33 Both chrC 4 433780 433699 Ser AGA caattacaat tttatttatt 0 0 86.17 57.13 29.04 Both chrC 5 402196 402124 Thr AGT aaattattaa tttattcttt 0 0 72.75 47.41 25.34 Both chrC 6 310053 309980 Val AAC aatttaatat tttaattttt 0 0 68.42 45.91 22.51 Both chrC 7 304634 304563 His GTG cgtttaacat tttatttttt 0 0 65.11 38.69 26.42 Both   chrD 1 40063 40146 Leu TAA attctaaatt ttaatttttt 0 0 69.31 38.42 30.89 Both chrD 2 349921 349991 Gly GCC aatcacctca tttctttttt 0 0 62.73 36.41 26.32 Both chrD 3 356685 356758 Asn GTT gttttcgtat attttttttg 0 0 76.93 50.20 26.73 Both chrD 4 425740 425811 Glu CTC caagaaacat tattattttt 0 0 61.61 37.65 23.96 Both chrD 5 447843 447929 Lys TTT gaagaactca ttcttctatt 447880 447893 68.57 44.84 23.73 Both chrD 6 485731 485802 Arg TCT gaaattaata ctttcttttt 0 0 66.88 46.99 19.89 Both chrD 7 492459 492531 Lys CTT aatttaataa tatttctatt 0 0 77.79 52.97 24.82 Both chrD 8 516034 516104 Gly GCC aaataactag atttcttttt 0 0 62.73 36.41 26.32 Both chrD 9 569043 569113 Gly GCC acaagcacaa atttcttttt 0 0 62.73 36.41 26.32 Both chrD 10 576832 576903 Arg CCT ggtaacatct ttgcataatt 0 0 70.13 48.83 21.30 Both chrD 11 578043 578115 Ala TGC atatataatt taattttttt 0 0 76.57 56.87 19.70 Both chrD 12 590298 590371 Val AAC aaattagtat tttatttttt 0 0 68.42 45.91 22.51 Both chrD 13 600293 600222 Arg TCT taattactaa cttttttttt 0 0 66.88 46.99 19.89 Both chrD 14 477796 477723 Asn GTT ataaaaaaac ataatttttt 0 0 76.93 50.20 26.73 Both chrD 15 457405 457334 Cys GCA aacaacatat tatttttttg 0 0 75.27 50.39 24.88 Both chrD 16 450101 450020 Leu GAG aagacacctt ttgtttccaa 0 0 66.64 40.65 25.99 Both chrD 17 416641 416568 Val AAC aagttaacat tttaattttt 0 0 68.42 45.91 22.51 Both chrD 18 198685 198566 Leu CAA aatacagtat ttaaattttt 198647 198610 54.10 27.78 26.32 Both   chrE 1 28641 28714 Asn GTT cgtatttaat cgcttgtgtt 0 0 78.38 52.72 25.66 Both chrE 2 73534 73605 Gln TTG aacttcttat ctttttttct 0 0 70.23 46.39 23.84 Both chrE 3 288731 288803 Ala TGC tgttttttgc tatatttttt 0 0 76.57 56.87 19.70 Both chrE 4 454925 454996 Asp GTC aaatcattaa attttttttt 0 0 60.99 33.38 27.61 Both chrE 5 546993 547065 Met CAT aacagttaat tttatttttg 0 0 73.99 56.05 17.94 Both chrE 6 331351 331280 His GTG agaaaaatat gttttttttt 0 0 65.11 38.69 26.42 Both chrE 7 314272 314175 Phe GAA aagttaataa atttattttt 314235 314211 69.02 41.73 27.29 Both chrE 8 306994 306923 Arg TCT aaagtaataa cttttttttg 0 0 66.88 46.99 19.89 Both chrE 9 218517 218446 Gly TCC aacatctcag aatttttttg 0 0 71.59 46.28 25.31 Both   chrF 1 219170 219267 Phe GAA cgtttacaat ttattttttt 219207 219231 69.02 41.73 27.29 Both chrF 2 233357 233429 Thr AGT aacttaataa tttatttttt 0 0 72.75 47.41 25.34 Both chrF 3 288415 288496 Ser AGA taatattcct ttactttttt 0 0 86.17 57.13 29.04 Both chrF 4 610507 610614 Trp CCA caaaatagat tttatatttt 610543 610578 63.16 42.32 20.84 Both chrF 5 879028 878909 Leu CAA aatacagtat ttaatttttt 878990 878953 54.10 27.78 26.32 Both chrF 6 832674 832602 Val CAC gagttaactt tccaaacttc 0 0 79.05 49.89 29.16 Both chrF 7 705193 705086 Trp CCA acaaatagat tttatatttt 705157 705122 63.80 42.95 20.85 Both chrF 8 621389 621292 Phe GAA aatttactaa attttttttt 621352 621328 69.02 41.73 27.29 Both chrF 9 616515 616444 His GTG agagtttagc gttatttttt 0 0 66.37 40.73 25.64 Both chrF 10 535673 535530 Ile TAT gtatgaaaat ctttctctct 535636 535566 57.25 35.10 22.15 Both chrF 11 471723 471651 Ala AGC attacaacat tttatttttt 0 0 75.92 52.32 23.60 Both chrF 12 333459 333388 Gln CTG tcagttttta attttttttg 0 0 69.19 45.69 23.50 Both chrF 13 139239 139131 Pro TGG caattgatta atttaatttt 139203 139167 60.55 38.75 21.80 Both chrF 14 136534 136462 Thr AGT aattcaataa tttatttttt 0 0 72.75 47.41 25.34 Both chrF 15 39546 39475 Thr CGT aatcataatt ttctgtttat 0 0 76.93 57.37 19.56 Both   chrG 1 62853 62961 Pro TGG caattaatta atttaatttt 62889 62925 60.55 38.75 21.80 Both chrG 2 70780 70852 Ala TGC gcgttaattt tatttttttt 0 0 76.57 56.87 19.70 Both chrG 3 77743 77814 Glu TTC aatccagtat tgattagcca 0 0 62.99 35.57 27.42 Both chrG 4 143832 143904 Thr AGT aactaagtaa tttatttttt 0 0 72.75 47.41 25.34 Both chrG 5 275527 275598 Thr TGT agtgaagttt atttctctca 0 0 79.33 61.25 18.08 Both chrG 6 408152 408223 Asp GTC aaatcattaa attttttttt 0 0 60.99 33.38 27.61 Both chrG 7 591492 591563 Arg TCT aaattaataa ctttcttttt 0 0 66.88 46.99 19.89 Both chrG 8 804376 804519 Ile TAT cgttgaaaat ctttctctct 804413 804483 56.30 34.14 22.16 Both chrG 9 897513 897621 Trp CCA acaaatagat tttatatttt 897549 897585 63.29 42.44 20.85 Both chrG 10 900336 900264 Lys CTT caattaataa tatttatatt 0 0 77.79 52.97 24.82 Both chrG 11 859660 859573 Tyr GTA gtacaagata cttatttttt 859621 859609 71.62 40.16 31.46 Both chrG 12 677574 677502 Lys CTT aatttaataa tattactttt 0 0 77.79 52.97 24.82 Both chrG 13 627875 627757 Leu CAA aatacaatat ttaatttttt 627837 627801 54.60 28.29 26.31 Both chrG 14 486477 486404 Val AAC aagttaatat tttaattttt 0 0 68.42 45.91 22.51 Both chrG 15 407211 407139 Thr AGT atcattttaa tttatttttt 0 0 72.75 47.41 25.34 Both chrG 16 402954 402836 Leu CAA aatacaatat ttaatttttt 402916 402880 55.38 29.07 26.31 Both chrG 17 365510 365402 Pro TGG caattaaaac atttaatttt 365474 365438 60.55 38.75 21.80 Both chrG 18 152679 152606 Ile AAT acaattaaaa ttttattttt 0 0 71.40 43.78 27.62 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrH 1 180340 180427 Tyr GTA tttcaagtga ctttttttct 180379 180391 71.62 40.16 31.46 Both chrH 2 181552 181623 Asp GTC aaatcattaa attttctttt 0 0 60.99 33.38 27.61 Both chrH 3 181861 181963 Ser GCT aactcttagt ctttactttt 181898 181918 67.37 42.81 24.56 Both chrH 4 238083 238155 Ala AGC gaaatacaat tatttttttg 0 0 75.92 52.32 23.60 Both chrH 5 250359 250431 Ala AGC aaaacacaat ttttttgcta 0 0 75.92 52.32 23.60 Both chrH 6 269346 269417 Cys GCA aacataaaaa ctgttttttt 0 0 75.27 50.39 24.88 Both chrH 7 279537 279608 Glu TTC taagttgtta tgatagttaa 0 0 62.99 35.57 27.42 Both chrH 8 418419 418492 Val AAC aagttaatat tttaattttt 0 0 68.42 45.91 22.51 Both chrH 9 531206 531289 Leu TAA atagtattac ctattttttt 0 0 69.31 38.42 30.89 Both chrH 10 965518 965445 Val TAC acgtcccaat caagacgttt 0 0 72.86 48.36 24.50 Both chrH 11 936319 936248 Glu TTC aatccagtat tgattagcca 0 0 62.99 35.57 27.42 Both chrH 12 910724 910652 Thr AGT gaatttaaaa tttatttttt 0 0 72.75 47.41 25.34 Both chrH 13 845903 845795 Leu TAG catttaatat ttaatttttt 845865 845839 61.88 34.55 27.33 Both chrH 14 595750 595642 Leu TAG cagaaacact ttagtttttt 595712 595686 61.88 34.55 27.33 Both   chrI 1 117600 117681 Ser AGA agaacataat ttaacttttt 0 0 86.17 57.13 29.04 Both chrI 2 123989 124060 Met CAT cattttgtat atgatttttt 0 0 73.33 44.78 28.55 Both chrI 3 145662 145743 Ser AGA gtaacaggtt ttattttttt 0 0 86.17 57.13 29.04 Both chrI 4 236933 237020 Tyr GTA aatttaatta tattttttca 236972 236984 71.62 40.16 31.46 Both chrI 5 270965 271073 Pro TGG tcagataaat aatttgattt 271001 271037 60.55 38.75 21.80 Both chrI 6 366330 366400 Gly GCC aaacagttcc tttctttttt 0 0 62.73 36.41 26.32 Both chrI 7 506977 507049 Lys CTT catcaaataa tatttaattt 0 0 77.79 52.97 24.82 Both chrI 8 625426 625499 Ile AAT aaattacaat tttatttttg 0 0 71.40 43.78 27.62 Both chrI 9 667631 667704 Val AAC aagttaatat tttaattttt 0 0 68.42 45.91 22.51 Both chrI 10 714097 714169 Thr AGT caattattaa tttatttttt 0 0 72.75 47.41 25.34 Both chrI 11 795168 795249 Ser AGA agatattact ttattttttt 0 0 86.17 57.13 29.04 Both chrI 12 847556 847637 Ser AGA ctaatgttct ttactttttt 0 0 86.17 57.13 29.04 Both chrI 13 866818 866889 Gln TTG aacttcttat attatttttt 0 0 70.23 46.39 23.84 Both chrI 14 1061673 1061744 Met CAT tatttgatat cttttttttt 0 0 73.33 44.78 28.55 Both chrI 15 1047554 1047481 Ile AAT acaataaaat ttactttttt 0 0 71.40 43.78 27.62 Both chrI 16 958478 958406 Ala AGC ctgattaatt gtaatttttt 0 0 75.92 52.32 23.60 Both chrI 17 954587 954514 Asn GTT ataacaagaa aatttttttt 0 0 76.93 50.20 26.73 Both chrI 18 949588 949516 Ala AGC taaaatcgat gtaaattttt 0 0 75.92 52.32 23.60 Both chrI 19 874817 874745 Ala AGC aaattattat gtaatatttt 0 0 75.92 52.32 23.60 Both chrI 20 843621 843549 Arg ACG cgaattcttg aatatttttt 0 0 73.20 51.26 21.94 Both chrI 21 710913 710842 Asp GTC aaatcattaa atttattttt 0 0 60.99 33.38 27.61 Both chrI 22 641921 641848 Val AAC aagttaatat tttttttttg 0 0 68.42 45.91 22.51 Both chrI 23 507294 507221 Asn GTT tcattaatca gtattttttt 0 0 78.38 52.72 25.66 Both chrI 24 281292 281221 Met CAT ggtttaatat attttttttt 0 0 73.33 44.78 28.55 Both chrI 25 264246 264175 Arg TCT aaataactaa cttttctttt 0 0 66.88 46.99 19.89 Both chrI 26 144977 144869 Pro TGG caaatagtta aatttttttg 144941 144905 60.55 38.75 21.80 Both   chrJ 1 154247 154355 Leu TAG atcacattat ttaatttttt 154285 154311 61.88 34.55 27.33 Both chrJ 2 271817 271888 Gln TTG aacttcttat attatatttt 0 0 70.23 46.39 23.84 Both chrJ 3 926010 926083 Ile AAT aaatcacaat tttctttttt 0 0 71.40 43.78 27.62 Both chrJ 4 844213 844094 Leu CAA aatacagtat ttaatttttt 844175 844138 54.74 28.42 26.32 Both chrJ 5 636384 636313 Gln CTG aatcctacag attttttatt 0 0 69.19 45.69 23.50 Both chrJ 6 615236 615165 Gly TCC aacacttaaa ttttttttgc 0 0 71.59 46.28 25.31 Both chrJ 7 447412 447339 Asn GTT aatttaataa attatttttt 0 0 78.38 52.72 25.66 Both chrJ 8 326790 326717 Ile AAT aaatcacaat tttacttttt 0 0 71.40 43.78 27.62 Both chrJ 9 258561 258489 Lys CTT caattaataa tatttctatt 0 0 77.79 52.97 24.82 Both chrJ 10 176707 176635 Lys CTT caattaataa tatttctatt 0 0 77.79 52.97 24.82 Both chrJ 11 163750 163678 Lys CTT caattaataa tatttctatt 0 0 77.79 52.97 24.82 Both chrJ 12 157229 157157 Lys CTT caattaataa tatttctatt 0 0 77.79 52.97 24.82 Both chrJ 13 146477 146404 Val AAC aaattaacat tttaattatt 0 0 68.42 45.91 22.51 Both chrJ 14 108598 108526 Met CAT caagtaatat ttttattttt 0 0 73.99 56.05 17.94 Both chrJ 15 98041 97960 Ser AGA taattacaat tttatttttt 0 0 86.17 57.13 29.04 Both chrJ 16 15423 15352 Asp GTC aaatcagcaa attttttttt 0 0 60.99 33.38 27.61 Both chrJ 17 10213 10142 Glu CTC caattacata tttttttgca 0 0 61.61 37.65 23.96 Both   chrK 1 108485 108558 Val AAC aagttaacat tttatttttt 0 0 68.42 45.91 22.51 Both chrK 2 177620 177692 Lys CTT aatttaataa tatttctatt 0 0 77.79 52.97 24.82 Both chrK 3 379817 379888 Arg CCG aattatacat atacttgtat 0 0 52.88 35.50 17.38 Both chrK 4 578831 578935 Ser GCT taacaatcgt ctttattttt 578868 578890 68.54 43.98 24.56 Both chrK 5 579427 579535 Pro TGG caagttctga aacttttttt 579463 579499 59.77 37.97 21.80 Both chrK 6 646064 646135 Glu TTC caattaatag tgatcagcct 0 0 62.99 35.57 27.42 Both chrK 7 709520 709627 Trp CCA agaaatagat tttatatttt 709556 709591 64.86 44.01 20.85 Both chrK 8 768676 768757 Ser TGA acgttatttt ttaatttttt 0 0 84.16 62.98 21.18 Both chrK 9 1019730 1019800 Gly GCC aaaacattaa tttaattttt 0 0 62.73 36.41 26.32 Both chrK 10 1025607 1025694 Tyr GTA tttcaagtga cttatttttt 1025646 1025658 71.62 40.16 31.46 Both chrK 11 1086303 1086390 Tyr GTA ttttaagtga cttatttttt 1086342 1086354 71.62 40.16 31.46 Both chrK 12 1151933 1152016 Leu TAA tttttatcat ttattttttt 0 0 69.31 38.42 30.89 Both chrK 13 1127291 1127218 Val TAC aggaagaaat tcctttctct 0 0 75.75 50.98 24.77 Both chrK 14 1038706 1038636 Gly GCC acaagttcaa ttttcttttt 0 0 62.73 36.41 26.32 Both chrK 15 948152 948055 Phe GAA aatttactaa atctattttt 948115 948091 69.02 41.73 27.29 Both chrK 16 910831 910731 Ser CGA tctacaaaat ttttaatttt 910794 910776 74.40 51.58 22.82 Both chrK 17 882387 882315 Thr AGT cgtttaataa tttttttaat 0 0 72.75 47.41 25.34 Both chrK 18 850788 850717 His GTG aaattaatac ttattttttt 0 0 65.11 38.69 26.42 Both chrK 19 503586 503489 Phe GAA aatttactaa ttttattttt 503549 503525 69.02 41.73 27.29 Both chrK 20 302212 302140 Ala AGC aattttgaat atattttttt 0 0 75.92 52.32 23.60 Both chrK 21 234919 234846 Val AAC aagttaacat tttatttttt 0 0 68.42 45.91 22.51 Both chrK 22 65310 65239 Asp GTC aaatcattaa attttctttt 0 0 60.99 33.38 27.61 Both   chrL 1 152272 152353 Ser AGA tagtgctatt ttattacttt 0 0 86.17 57.13 29.04 Both chrL 2 179977 180049 Ala AGC taaaataact tattattttt 0 0 75.92 52.32 23.60 Both chrL 3 558504 558575 His GTG aagcatcttt ttttttttgc 0 0 65.11 38.69 26.42 Both chrL 4 565593 565664 Arg TCT caaatagtaa cttatttttt 0 0 66.88 46.99 19.89 Both chrL 5 633743 633815 Lys CTT caattaataa tatttatttt 0 0 77.79 52.97 24.82 Both chrL 6 838214 838286 Arg ACG gaaaatcttg attttttttg 0 0 73.20 51.26 21.94 Both chrL 7 866119 866191 Lys CTT caattaataa tatttatttt 0 0 77.79 52.97 24.82 Both chrL 8 869819 869890 Gln TTG aacttcttat attatttttt 0 0 70.23 46.39 23.84 Both chrL 9 1009597 1009667 Gly GCC aagtaattac ctttcttttt 0 0 62.73 36.41 26.32 Both chrL 10 1103435 1103521 Lys TTT gaagaactca ttcttctatt 1103472 1103485 68.57 44.84 23.73 Both chrL 11 1210811 1210882 Arg TCT aagttaataa cttttccttc 0 0 66.88 46.99 19.89 Both chrL 12 1341479 1341552 Ile AAT taattaaaat ttcttttttt 0 0 71.40 43.78 27.62 Both chrL 13 1248066 1247994 Lys CTT aattaaataa tattattttt 0 0 77.79 52.97 24.82 Both chrL 14 1079145 1079074 Glu CTC gcacatacaa tattattttt 0 0 61.61 37.65 23.96 Both chrL 15 1028538 1028468 Gly GCC aattaactaa tttcttttta 0 0 62.73 36.41 26.32 Both chrL 16 1026047 1025976 Glu TTC tagttactat tgaattagcc 0 0 62.99 35.57 27.42 Both chrL 17 1021040 1020969 Glu TTC tagttactat tgaattagcc 0 0 62.99 35.57 27.42 Both chrL 18 1020583 1020513 Gly GCC aatcagttaa tttctttttt 0 0 62.73 36.41 26.32 Both chrL 19 948165 948092 Asn GTT catattacat gtatcttttt 0 0 78.38 52.72 25.66 Both chrL 20 934691 934618 Ile AAT aaatcacaat ttttattttt 0 0 71.40 43.78 27.62 Both chrL 21 717669 717596 Ile AAT aaataacaat tttacttttt 0 0 71.40 43.78 27.62 Both chrL 22 208098 208027 Glu TTC aatccagtat tgattagcca 0 0 62.99 35.57 27.42 Both chrL 23 175421 175334 Tyr GTA aatttaatta tatttttttt 175382 175370 71.62 40.16 31.46 Both chrL 24 132608 132538 Gly GCC aagtagttcc tactttttta 0 0 62.73 36.41 26.32 Both chrL 25 108290 108219 Gln TTG aacttcttat aatttttttg 0 0 70.23 46.39 23.84 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrM 1 116503 116605 Ser GCT aaatccaagt ctttcttttt 116540 116560 67.37 42.81 24.56 Both chrM 2 178619 178690 Gly CCC aatacagttc gctttcttta 0 0 57.66 45.39 12.27 Eufind chrM 3 392109 392182 Asn GTT caattagtaa gtatcttttt 0 0 75.42 53.24 22.18 Both chrM 4 756146 756218 Ala AGC caattaccat gtattttttt 0 0 75.92 52.32 23.60 Both chrM 5 895492 895573 Ser AGA aaggtaatac ttactttttt 0 0 86.17 57.13 29.04 Both chrM 6 1308189 1308260 Thr TGT cttaccattt aattttttct 0 0 79.33 61.25 18.08 Both chrM 7 1245172 1245091 Ser TGA actgtgttgt ttattttttt 0 0 84.16 62.98 21.18 Both chrM 8 1096456 1096384 Arg ACG cgaattcttg aatacttttt 0 0 73.20 51.26 21.94 Both chrM 9 1090048 1089962 Lys TTT ggagaactca ttcttctttt 1090011 1089998 68.57 44.84 23.73 Both chrM 10 845721 845650 Glu TTC ttgttactta tgatcagcca 0 0 62.99 35.57 27.42 Both chrM 11 794903 794833 Gly GCC aaatacacaa tttacttttt 0 0 62.73 36.41 26.32 Both chrM 12 783341 783270 Glu TTC cgattaatag tgatcagcca 0 0 62.99 35.57 27.42 Both chrM 13 689457 689384 Ile AAT aaatcataat ttttatttta 0 0 71.40 43.78 27.62 Both chrM 14 595748 595677 Cys GCA gttttaagat cttatttttt 0 0 75.27 50.39 24.88 Both chrM 15 549596 549525 Arg TCT aagttaagat cttttttttt 0 0 66.88 46.99 19.89 Both chrM 16 549163 549092 Asp GTC aaatcattaa atttattttt 0 0 60.99 33.38 27.61 Both chrM 17 514662 514590 Ala TGC gaatttaatt acttttttta 0 0 76.57 56.87 19.70 Both chrM 18 397826 397755 Met CAT caaaacggta tttttttttt 0 0 73.33 44.78 28.55 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.