Genomic tRNA Database: Candidatus Methanoregula boonei 6A8

tRNAscan-SE Analysis of Candidatus Methanoregula boonei 6A8

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>> Genome Seq

Predicted tRNA Secondary Structures

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chr.trna18 (1-72)	Length: 72 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 71.36
Seq: GGGCTCGTAGATCAGGGGTAGATCGCTACGTTCGCAACGTAGAGGcCGCGGGTTCAAATCCCGCCGGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna40 (1-72)	Length: 72 bp
Type: Ala	Anticodon: GGC at 33-35 (33-35)	Score: 64.70
Seq: GGGCTGGTGGTAAAGTGGTATTACGCTCCCTTGGCATGGGAGAGGcCGCGGGTTCAATTCCCGCCCAGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna19 (1-72)	Length: 72 bp
Type: Ala	Anticodon: TGC at 33-35 (33-35)	Score: 68.94
Seq: GGGCTCGTAGATCAGGGGTAGATCGTCACGTTTGCAACGTGAAGGcCACGGGTTCGAATCCCGTCGAGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna8 (1-72)	Length: 72 bp
Type: Arg	Anticodon: CCG at 34-36 (34-36)	Score: 60.82
Seq: GCCTCGGTAGGGTAGTGGAcATCCTAGAAGCCTCCGGAGCTTTTGACCCGGGTTCAAGTCCCGGCCGAGGCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna30 (1-75)	Length: 75 bp
Type: Arg	Anticodon: CCT at 36-38 (36-38)	Score: 76.73
Seq: GGGCGAGTGGCTTAGTCcGGAtAGAGCGTTAGCCTCCTAAGCTAATGGtCGGGGGTTCAAATCCCCCCTCGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna37 (1-72)	Length: 72 bp
Type: Arg	Anticodon: GCG at 34-36 (34-36)	Score: 58.02
Seq: GTCCCGGTGGGGTAGTGGAcATCCTAGAAGCCTGCGGAGCTTTTGACCCGGGTTCAAGTCCCGGCCGGGGCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna42 (1-72)	Length: 72 bp
Type: Arg	Anticodon: TCG at 34-36 (34-36)	Score: 51.59
Seq: GGATCCATGGGGTAGAGGAtATCCTCTTGGGCTTCGAACCCAAGGACGCGGGTTCGATTCCCGCTGGGTCCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 81.08
Seq: GGGCTTGTGGCTTAGCTtGGAcATAGCGCCGGGCTTCTAACCCGGATGtCGGGGGTTCAAATCCCTCCAAGCCCG
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna2 (1-73)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (34-36)	Score: 66.59
Seq: GCCGCCATAACTCAGTTGGTAGAGTGGCTGGCTGTTAACCAGCATGtCACAGGTTCGAGTCCTGTTGGCGGCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna32 (1-73)	Length: 73 bp
Type: Asp	Anticodon: GTC at 35-37 (35-37)	Score: 61.40
Seq: GCCCAGGTAGTGTAGCGGCctATCATGATTGCCTGTCACGCAATCGACTCGGATTCGAATTCCGACCTGGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna27 (1-71)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (33-35)	Score: 38.05
Seq: GCCAGGATGGCGGAAAGGCTACGCGGCTGACTGCAGATCAGCGTATCCCGGTTCGATTCCGGGTCCTGGCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna28 (1-71)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (33-35)	Score: 38.05
Seq: GCCAGGATGGCGGAAAGGCTACGCGGCTGACTGCAGATCAGCGTATCCCGGTTCGATTCCGGGTCCTGGCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (1-73)	Length: 73 bp
Type: Cys	Anticodon: GCA at 34-36 (34-36)	Score: 44.43
Seq: GCCGGTGTGGCAGAGCGGTtAATGCCTTCGCCTGCAGAGCGAATGTcTGGGGGTCCGACTCCCTCCGCCGGCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (1-72)	Length: 72 bp
Type: Cys	Anticodon: GCA at 33-35 (33-35)	Score: 51.27
Seq: GCCAAGGTGGCGGAGCGGCCACGCGGTTGACTGCAGATCAACTACaCTCCGGTTCAAATCCGGACCTTGGCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna43 (1-73)	Length: 73 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 61.70
Seq: AGCCCGGTAGTGTAGCGGTcaATCATGCGAGACTCTGGATCTCGCGACAGCAGTTCGAATCTGCTCCGGGCTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna4 (1-73)	Length: 73 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 64.77
Seq: ACCCCCGTAGTGTAGCGGTcaATCATGCAGGACTTTGGATCCGGCGACACCAGTTCGAATCTGGTCGGGGGTA
Str: >>>>>>>..>>>...........<<<.>.>>>.......<<<.<....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (1-75)	Length: 75 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 63.30
Seq: GCTGCTATAGTGTAGACcGGCcaATCATGCGAGCCTCTCACGCTCGCGACAGGGGTTCAAATCCCCTTAGCAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (1-75)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (37-39)	Score: 66.48
Seq: GCTGCTATAGTGTAGACcGGCcaATCATGCGGGCCTTTCACGCCCGCGACTGGGGTTCAAATCCCCATAGCAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (1-71)	Length: 71 bp
Type: Gly	Anticodon: CCC at 33-35 (33-35)	Score: 53.81
Seq: GCGATAGTAGTCTAGCGGCAGGACAGGAGCTTCCCAAGCTTCTAACCCGGGTTCGATCCCCGGCTATCGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (1-72)	Length: 72 bp
Type: Gly	Anticodon: GCC at 34-36 (34-36)	Score: 62.20
Seq: GCGCCGATAGTGTAGTGGTtATCACTAGGCGTTGCCAACGCCTAAACTCGGGTTCGAGTCCCGATCGGCGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna46 (1-71)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (33-35)	Score: 64.00
Seq: GCATCGATGGTCTAGAGGTATGACTTAGGCCTTCCAAGCCTATAGCCCGGGTTCGATTCCCGGTCGATGCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (1-74)	Length: 74 bp
Type: His	Anticodon: GTG at 36-38 (36-38)	Score: 61.29
Seq: GCCAGGGTAGGGTAGTCtGGTtATCCTAAGGGGCTGTGGATCCCTCGACCCGGGTTCAAATCTCGGCCCTGGCC
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna45 (1-74)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (35-37)	Score: 74.52
Seq: GGGCCCGTAGCATAGCCcGGTGGTGCGCCCGGCTGATAACCGGGAGGtCATGCGTTCGAATCGCATCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna1 (1-83)	Length: 83 bp
Type: Leu	Anticodon: CAA at 35-37 (35-37)	Score: 48.33
Seq: GCGAGAATATCTAAGTGGCcaACAGAGGCGGACTCAAGATCCGTTCCCGAAGGGGTtCGCAGGTTCGACTCCTGCTTCTCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna11 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 60.46
Seq: GCGAGGGTAGCCAAGCCaGGTcaACGGCGCCAGGTTCAGGGCCTGGTCTCGCAGGAGTtCTTGGGTTCGAATCCCATCCCTCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<....>>>>.......<<<<.<<<<<<<.

chr.trna7 (1-85)	Length: 85 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 60.88
Seq: GCGAGGGTAGCCAAGCCaGGTcaAAGGCGCTAGGTTGAGGGCCTAGTCTCGTAGGAGTtCTTGGGTTCGAATCCCATCCCTCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<....>>>>.......<<<<.<<<<<<<.

chr.trna38 (1-83)	Length: 83 bp
Type: Leu	Anticodon: TAA at 35-37 (35-37)	Score: 52.19
Seq: GCGAGGGTACGAAAGTGGCcaACTCGGCTGGACTTAAGATCCAGTTCCGCAGGGATtCATGGGTTCGACTCCCATCCCTCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna35 (1-85)	Length: 85 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 65.63
Seq: GCGAGGATCGCCGAGCTtGGTcaAAGGCGCTGGATTTAGGGTCCAGTCCCGCAGGGGTtCGCCGGTTCGAATCCGGCTCCTCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna17 (1-74)	Length: 74 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 77.39
Seq: GGGTCTGTAGCTTAGTTcGGCATAGCGGCGGACTCTTAATCCGCAGGtCAAGGGTTCAAATCCCTTCAGGCCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna29 (1-74)	Length: 74 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 81.50
Seq: GGGTTCGTAGCTCAGTTcGGTAGAGCGCCTGGCTTTTAACCAGGTGGtCGGGGGTTCAAATCCCTCCGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna48 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 72.22
Seq: AGCGAGGTAGGGTAGTCaGGAtATCCCGACGGGCTCATAACCCGTAGAtCGATGGTTCAAATCCATCCCTCGCTA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 79.52
Seq: GGGCCTGTAGCTCAGTCcGGTtAGAGCGCCCGGCTCATAACCGGGCGGtCATGCGTTCGAATCGCATCAGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna33 (1-130)	Length: 130 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 49.05
Possible intron: 39-94 (39-94)
Seq: GCTGCGGTGGCCTAGCTGGTtAGGGCGCCAGACTCATAgggttttattggagcgcaaaaacaatccggtttttgcgcgataagatacctgggacATCTGGAGAtCGTGGGATCGTAACCCACTCGCAGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>...............................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna39 (1-74)	Length: 74 bp
Type: Phe	Anticodon: GAA at 35-37 (35-37)	Score: 78.50
Seq: GCCCTAGTAGCTCAGACtGGGAGAGCGCCAGACTGAAGATCTGGTTGtCCCCGGTTCAAATCCGGGCTGGGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna23 (1-75)	Length: 75 bp
Type: Pro	Anticodon: CGG at 37-39 (37-39)	Score: 64.53
Seq: GGGGTCGTGGGGTAGCCtGGActATCCTATTGCGTTCGGGACGCAGTGACCTGAGTTCGAATCTCAGCGACCCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna14 (1-74)	Length: 74 bp
Type: Pro	Anticodon: GGG at 36-38 (36-38)	Score: 59.51
Seq: GGGGCCATAGGGTAGCCtGGCcATCCTAGGAGACTGGGGGTCTTCTGACTCGCGTTCAAATCGCGATGGCCCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (1-75)	Length: 75 bp
Type: Pro	Anticodon: TGG at 37-39 (37-39)	Score: 64.28
Seq: GGGGTAGTAGGGTAGCCtGGTccATCCTAGAGCGTTTGGGACGCTTTGACGGCGGTTCGAATCCGCCCTACCCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1-85)	Length: 85 bp
Type: Ser	Anticodon: CGA at 35-37 (35-37)	Score: 56.26
Seq: GCCGAGGTAGTCTAGCCcGGGAAGGCGGTAGCCTCGAAAGCTACTGGCGCTTCgCGCCtCGGGAGTTCAAATCTCCCCCTCGGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1-85)	Length: 85 bp
Type: Ser	Anticodon: GCT at 35-37 (35-37)	Score: 60.31
Seq: GTTGAGGTAGCCAAGCCtGGTATGGCGCAGGTTTGCTAAACCTGTGTCCCAAAaGGACtCGAGGGTTCAAATCCCTCCCTCAGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna44 (1-84)	Length: 84 bp
Type: Ser	Anticodon: GGA at 33-35 (33-35)	Score: 57.91
Seq: GCTGAGGTAGTCTAGCGGTAGGGCGCAGGCCTGGAAAGCCTGTGGTGCGAAAGTGCCtCGGGGGTTCAATTCCCCCCCTCAGCG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<..>>>>....<<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna9 (1-85)	Length: 85 bp
Type: Ser	Anticodon: TGA at 35-37 (35-37)	Score: 56.62
Seq: GCCGGGGTAGTCTAGTCcGGTAAGGCGGTGGCCTTGAAAGCCACTGGTGCCCtGCACCtCAAGAGTTCAAATCTCTTCCCCGGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>...<<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna26 (1-72)	Length: 72 bp
Type: Thr	Anticodon: CGT at 33-35 (33-35)	Score: 76.94
Seq: GCCGCCGTGGCTTAGCGGCATAGCGGCTGATTCGTAATCAGCAGGtCGAGGGTTCAAGTCCCTCCGGCGGCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (1-74)	Length: 74 bp
Type: Thr	Anticodon: GGT at 35-37 (35-37)	Score: 65.20
Seq: GCCTAAGTGACTCAGCCcGGCAGAGTACCTCCTTGGTAAGGAGGAAGtCGCGAGTTCAAATCTCGCCTTAGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (1-73)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (34-36)	Score: 75.12
Seq: GCCTCAGTGGCTTAGCTGGCAGAGCGGCTGACTTGTAATCAGCAGGtCCCGTGTTCAAATCACGGCTGAGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna49 (1-172)	Length: 172 bp
Type: Trp	Anticodon: CCA at 35-37 (35-37)	Score: 49.68
Possible intron: 39-136 (39-136)
Seq: GGGGTTGTGGCCAAGCCcGGAATGGCGACGGGCTCCAGcggtctttgcgttcaaaaaacgtgctcgcagatgatgaacaatgggtctgctgaaattgatgatgacccgttggagcactgatgcgcatgtcggagagACCCGTCGAtCGTGAGTTCAAATCTCACCAACCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.........................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (1-106)	Length: 106 bp
Type: Tyr	Anticodon: GTA at 35-37 (35-37)	Score: 57.44
Possible intron: 39-70 (39-70)
Seq: CCCGCCTTAACTCAGCCtGGTAGAGTGCGCGGCTGTAGtatggtttgccggtatcggcaactgcgcggctACCGCGATGtCCCCGGTCCGAATCCGGGAGGCGGGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna47 (1-74)	Length: 74 bp
Type: Val	Anticodon: CAC at 35-37 (35-37)	Score: 68.31
Seq: GGGCTCGTGGTCTAGTTGGCtATGACGTCGCCTTCACACGGCGAAGAtCTCGTGTTCGAATCACGACGGGCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (1-74)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (35-37)	Score: 68.15
Seq: GGGCTCGTGGTCTAGTTGGCtATGACGTCGCCTTGACATGGCGGAGGtCCTGAGTTCGAATCTCAGCGGGCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna41 (1-72)	Length: 72 bp
Type: Val	Anticodon: TAC at 33-35 (33-35)	Score: 76.66
Seq: GGGCTCGTGGTCTAGCGGTATGACGTCGCCCTTACACGGCGAAGGtCACCGGTTCGAATCCGGTCGGGCCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.