>> tRNAscan-SE >> Lowe Lab
[Home] [Find tRNAs] [BLAST] [Download] [Bug/Request] [FAQ] [Citation] [Legend] [Other Links]

tRNAscan-SE Analysis of Candidatus Methanoregula boonei 6A8

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 1 119615 119697 View Leu CAA cacttagtgc tcaagattgt 0 0 48.33 15.65 32.68   chr 2 473506 473578 View Asn GTT ggaaactgct cttatgggcc 0 0 66.59 42.21 24.38   chr 3 473584 473658 View Met CAT cggcgcttat ttgcccattt 0 0 79.52 56.49 23.03   chr 4 692471 692543 View Gln TTG atcgtcgagc tatccgttat 0 0 64.77 43.59 21.18   chr 5 730470 730544 View Pro TGG tacaggaagc tgcatggacg 0 0 64.28 38.33 25.95   chr 6 1259143 1259214 View Gly GCC agagcacact cttcttgttt 0 0 62.20 39.99 22.21   chr 7 1302714 1302798 View Leu GAG tcttcattgg ctttttctga 0 0 60.88 38.10 22.78   chr 8 1323789 1323860 View Arg CCG ggtaaatttt ctccgttttc 0 0 60.82 40.45 20.37   chr 9 1441465 1441549 View Ser TGA acgcataaat tccggcccct 0 0 56.62 38.30 18.32   chr 10 1451410 1451484 View Glu TTC agagcaacgc ttcgaacact 0 0 66.48 41.62 24.86   chr 11 1760640 1760724 View Leu CAG ctatacaggc tctctggcca 0 0 60.46 43.01 17.45   chr 12 1927535 1927609 View Glu CTC gggcaattac ctcgaacact 0 0 63.30 35.26 28.04   chr 13 1993588 1993662 View Arg TCT ggcgttattt ttctcctttt 0 0 81.08 66.49 14.59   chr 14 2004798 2004871 View Pro GGG ctatgaccgc ttttcaattg 0 0 59.51 29.69 29.82   chr 15 2038074 2038144 View Gly CCC aagtactttc ttggttggta 0 0 53.81 29.90 23.91   chr 16 2055703 2055775 View Cys GCA taattctagt tccaaaacaa 0 0 44.43 23.40 21.03   chr 17 2346112 2346185 View Lys CTT taggctacgt cttttctttc 0 0 77.39 60.33 17.06   chr 18 2379574 2379645 View Ala CGC ataccgcact tcctgtttta 0 0 71.36 51.07 20.29   chr 19 2383886 2383957 View Ala TGC ccgcatacga tcatttttcc 0 0 68.94 43.31 25.63   chr 20 2466900 2466984 View Ser CGA aaaaaccggt ttcttttaaa 0 0 56.26 33.29 22.97   chr 21 2364235 2364162 View His GTG aggaacatct tcgtttttct 0 0 61.29 43.69 17.60   chr 22 2296584 2296500 View Ser GCT agattcctct cttcaaagag 0 0 60.31 32.24 28.07   chr 23 2292778 2292704 View Pro CGG gatgacaaaa ttttaataaa 0 0 64.53 40.51 24.02   chr 24 2247272 2247201 View Cys GCA ctacacggtc tggaccggtt 0 0 51.27 22.32 28.95   chr 25 2234203 2234130 View Val GAC gaccttatgc tctctgtatt 0 0 68.15 51.68 16.47   chr 26 2136953 2136882 View Thr CGT gaggcagtgc tcttttgcgc 0 0 76.94 59.24 17.70   chr 27 2124814 2124744 View Cys GCA aaccgcccgt ttcctgttat 0 0 38.05 14.32 23.73   chr 28 2123436 2123366 View Cys GCA tgaatgtgat tttccgaggt 0 0 38.05 14.32 23.73   chr 29 2002199 2002126 View Lys TTT ttactttcca ttaccacgac 0 0 81.50 72.22 9.28   chr 30 1923324 1923250 View Arg CCT tatgagcagt tctctccggc 0 0 76.73 55.38 21.35   chr 31 1899234 1899129 View Tyr GTA taggcagtgc taaactgtac 1899196 1899165 57.44 30.42 27.02   chr 32 1899112 1899040 View Asp GTC gtaccaaaga tttacaacgt 0 0 61.40 32.50 28.90   chr 33 1864766 1864637 View Met CAT gcactttcgt tccctgtttt 1864728 1864673 49.05 32.95 16.10   chr 34 1862282 1862210 View Thr TGT tgtatatggc ttgtcgtact 0 0 75.12 51.11 24.01   chr 35 1393977 1393893 View Leu TAG gtgagaatgc tatttttgca 0 0 65.63 41.38 24.25   chr 36 1320489 1320416 View Thr GGT agcatgctgt cttgtttttc 0 0 65.20 37.35 27.85   chr 37 1216813 1216742 View Arg GCG aaacacacac cttcactttt 0 0 58.02 41.69 16.33   chr 38 831707 831625 View Leu TAA actatagggc ctttttctga 0 0 52.19 19.70 32.49   chr 39 779946 779873 View Phe GAA tttgtgtcct taaaaacgct 0 0 78.50 61.33 17.17   chr 40 735064 734993 View Ala GGC tggttagagc ttccgcgttt 0 0 64.70 44.30 20.40   chr 41 637065 636994 View Val TAC gtaggttatc tctcctctct 0 0 76.66 59.15 17.51   chr 42 509768 509697 View Arg TCG aggttgggaa cttttttgcc 0 0 51.59 33.56 18.03   chr 43 502265 502193 View Gln CTG aggcagttat ctcttttgtt 0 0 61.70 30.32 31.38   chr 44 494636 494553 View Ser GGA tacacttttt ttctgacact 0 0 57.91 44.14 13.77   chr 45 484321 484248 View Ile GAT caatcctttt tatccttgtt 0 0 74.52 52.26 22.26   chr 46 221399 221329 View Gly TCC agagcgcagt tgcgggctcg 0 0 64.00 44.40 19.60   chr 47 221325 221252 View Val CAC cgatgcatgc taagaccaag 0 0 68.31 48.04 20.27   chr 48 87426 87352 View Met CAT taagtctgga ttttcttttg 0 0 72.22 42.96 29.26   chr 49 742580 742751 View Trp CCA catgacgggc cgttttccag 742618 742715 49.68 21.85 27.83   Note: Only introns located between position 37 and 38 are listed in the table above.

---

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.