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tRNAscan-SE Analysis of Candidatus Methanoregula boonei 6A8

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 18 2379574 2379645 View Ala CGC ataccgcact tcctgtttta 0 0 71.36 51.07 20.29   chr 40 735064 734993 View Ala GGC tggttagagc ttccgcgttt 0 0 64.70 44.30 20.40   chr 19 2383886 2383957 View Ala TGC ccgcatacga tcatttttcc 0 0 68.94 43.31 25.63     chr 8 1323789 1323860 View Arg CCG ggtaaatttt ctccgttttc 0 0 60.82 40.45 20.37   chr 30 1923324 1923250 View Arg CCT tatgagcagt tctctccggc 0 0 76.73 55.38 21.35   chr 37 1216813 1216742 View Arg GCG aaacacacac cttcactttt 0 0 58.02 41.69 16.33   chr 42 509768 509697 View Arg TCG aggttgggaa cttttttgcc 0 0 51.59 33.56 18.03   chr 13 1993588 1993662 View Arg TCT ggcgttattt ttctcctttt 0 0 81.08 66.49 14.59     chr 2 473506 473578 View Asn GTT ggaaactgct cttatgggcc 0 0 66.59 42.21 24.38     chr 32 1899112 1899040 View Asp GTC gtaccaaaga tttacaacgt 0 0 61.40 32.50 28.90     chr 27 2124814 2124744 View Cys GCA aaccgcccgt ttcctgttat 0 0 38.05 14.32 23.73   chr 28 2123436 2123366 View Cys GCA tgaatgtgat tttccgaggt 0 0 38.05 14.32 23.73   chr 16 2055703 2055775 View Cys GCA taattctagt tccaaaacaa 0 0 44.43 23.40 21.03   chr 24 2247272 2247201 View Cys GCA ctacacggtc tggaccggtt 0 0 51.27 22.32 28.95     chr 43 502265 502193 View Gln CTG aggcagttat ctcttttgtt 0 0 61.70 30.32 31.38   chr 4 692471 692543 View Gln TTG atcgtcgagc tatccgttat 0 0 64.77 43.59 21.18     chr 12 1927535 1927609 View Glu CTC gggcaattac ctcgaacact 0 0 63.30 35.26 28.04   chr 10 1451410 1451484 View Glu TTC agagcaacgc ttcgaacact 0 0 66.48 41.62 24.86     chr 15 2038074 2038144 View Gly CCC aagtactttc ttggttggta 0 0 53.81 29.90 23.91   chr 6 1259143 1259214 View Gly GCC agagcacact cttcttgttt 0 0 62.20 39.99 22.21   chr 46 221399 221329 View Gly TCC agagcgcagt tgcgggctcg 0 0 64.00 44.40 19.60     chr 21 2364235 2364162 View His GTG aggaacatct tcgtttttct 0 0 61.29 43.69 17.60     chr 45 484321 484248 View Ile GAT caatcctttt tatccttgtt 0 0 74.52 52.26 22.26     chr 1 119615 119697 View Leu CAA cacttagtgc tcaagattgt 0 0 48.33 15.65 32.68   chr 11 1760640 1760724 View Leu CAG ctatacaggc tctctggcca 0 0 60.46 43.01 17.45   chr 7 1302714 1302798 View Leu GAG tcttcattgg ctttttctga 0 0 60.88 38.10 22.78   chr 38 831707 831625 View Leu TAA actatagggc ctttttctga 0 0 52.19 19.70 32.49   chr 35 1393977 1393893 View Leu TAG gtgagaatgc tatttttgca 0 0 65.63 41.38 24.25     chr 17 2346112 2346185 View Lys CTT taggctacgt cttttctttc 0 0 77.39 60.33 17.06   chr 29 2002199 2002126 View Lys TTT ttactttcca ttaccacgac 0 0 81.50 72.22 9.28     chr 48 87426 87352 View Met CAT taagtctgga ttttcttttg 0 0 72.22 42.96 29.26   chr 3 473584 473658 View Met CAT cggcgcttat ttgcccattt 0 0 79.52 56.49 23.03   chr 33 1864766 1864637 View Met CAT gcactttcgt tccctgtttt 1864728 1864673 49.05 32.95 16.10     chr 39 779946 779873 View Phe GAA tttgtgtcct taaaaacgct 0 0 78.50 61.33 17.17     chr 23 2292778 2292704 View Pro CGG gatgacaaaa ttttaataaa 0 0 64.53 40.51 24.02   chr 14 2004798 2004871 View Pro GGG ctatgaccgc ttttcaattg 0 0 59.51 29.69 29.82   chr 5 730470 730544 View Pro TGG tacaggaagc tgcatggacg 0 0 64.28 38.33 25.95     chr 20 2466900 2466984 View Ser CGA aaaaaccggt ttcttttaaa 0 0 56.26 33.29 22.97   chr 22 2296584 2296500 View Ser GCT agattcctct cttcaaagag 0 0 60.31 32.24 28.07   chr 44 494636 494553 View Ser GGA tacacttttt ttctgacact 0 0 57.91 44.14 13.77   chr 9 1441465 1441549 View Ser TGA acgcataaat tccggcccct 0 0 56.62 38.30 18.32     chr 26 2136953 2136882 View Thr CGT gaggcagtgc tcttttgcgc 0 0 76.94 59.24 17.70   chr 36 1320489 1320416 View Thr GGT agcatgctgt cttgtttttc 0 0 65.20 37.35 27.85   chr 34 1862282 1862210 View Thr TGT tgtatatggc ttgtcgtact 0 0 75.12 51.11 24.01     chr 49 742580 742751 View Trp CCA catgacgggc cgttttccag 742618 742715 49.68 21.85 27.83     chr 31 1899234 1899129 View Tyr GTA taggcagtgc taaactgtac 1899196 1899165 57.44 30.42 27.02     chr 47 221325 221252 View Val CAC cgatgcatgc taagaccaag 0 0 68.31 48.04 20.27   chr 25 2234203 2234130 View Val GAC gaccttatgc tctctgtatt 0 0 68.15 51.68 16.47   chr 41 637065 636994 View Val TAC gtaggttatc tctcctctct 0 0 76.66 59.15 17.51   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.